Publications

2020

  1. 72.
    Degani, N., Ainbinder, E., Ulitsky, I., Nov 2020, bioRxiv.  Abstract
  2. 71.
    Hezroni H.; Ben-Tov Perry, R.; Gil, N.; Degani. N.; Ulitsky, I.. , Sep 2020, EMBO Reports. In press,  Abstract
  3. 70.
    J.A. Ramilowski, C.W. Yip, S. Agrawal, J.C. Chang, Y. Ciani, I.V. Kulakovskiy, M. Mendez, J.L.C. Ooi, J.F. Ouyang, N. Parkinson, A. Petri, L. Roos, J. Severin, K. Yasuzawa, I. Abugessaisa, A. Akalin, I.V. Antonov, E. Arner, A. Bonetti, H. Bono, B. Borsari, F. Brombacher, C.J.F. Cameron, C. Vittorio Cannistraci, R. Cardenas, M. Cardon, H. Chang, J. Dostie, L. Ducoli, A. Favorov, A. Fort, D. Garrido, N. Gil, J. Gimenez, R. Guler, L. Handoko, J. Harshbarger, A. Hasegawa, Y. Hasegawa, K. Hashimoto, N. Hayatsu, P. Heutink, T. Hirose, E.L. Imada, M. Itoh, B. Kaczkowski, A. Kanhere, E. Kawabata, H. Kawaji, T. Kawashima, S.T. Kelly, M. Kojima, N. Kondo, H. Koseki, T. Kouno, A. Kratz, M. Kurowska-Stolarska, A. Tae Jun Kwon, J. Leek, A. Lennartsson, M. Lizio, F. López-Redondo, J. Luginbühl, S. Maeda, V.J. Makeev, L. Marchionni, Y.A. Medvedeva, A. Minoda, F. Müller, M. Muñoz-Aguirre, M. Murata, H. Nishiyori, K.R. Nitta, S. Noguchi, Y. Noro, R. Nurtdinov, Y. Okazaki, V. Orlando, D. Paquette, C.J.C. Parr, O.J.L. Rackham, P. Rizzu, D. Fernando Sánchez Martinez, A. Sandelin, P. Sanjana, C.A.M. Semple, Y. Shibayama, D.M. Sivaraman, T. Suzuki, S.C. Szumowski, M. Tagami, M.S. Taylor, C. Terao, M. Thodberg, S. Thongjuea, V. Tripathi, I. Ulitsky, R. Verardo, I.E. Vorontsov, C. Yamamoto, R.S. Young39, J.K. Baillie, A.R.R. Forrest, R. Guigó, M.M. Hoffman, C.C. Hon, T. Kasukawa, S. Kauppinen, J. Kere, B. Lenhard, C. Schneider, H. Suzuki, K. Yagi, M.J.L. de Hoon, J.W. Shin and P. Carninci, Jul 2020, Genome Research.  Abstract
  4. 69.
    B. Zuckerman, M. Ron, M. Mikl, E. Segal and I. Ulitsky, Jun 2020, Molecular Cell. 79, 2, p. 251-267.e6  Abstract
  5. 68.
    B. Slobodin, A. Bahat, U. Sehrawat, S. Becker-Herman, B. Zuckerman, A.N. Weiss, R. Han, R. Elkon, R. Agami, I. Ulitsky, I. Shachar, R. Dikstein., Apr 2020, Molecular Cell. 78, 3, p. 434-444.e5  Abstract
  6. 67.
    R.L. Seal, L.L. Chen, S. Griffiths‐Jones, T.M. Lowe, M.B. Mathews, D. O'Reilly, A.J. Pierce, P.F. Stadler, I. Ulitsky, S.L. Wolin and E.A. Bruford. A guide to naming human non‐coding RNA genes. , Mar 2020, The EMBO Journal. 39, 6, p. e103777  Abstract
  7. 66.
    N. Gil and I. Ulitsky, Feb 2020, Nature Reviews Genetics. 21, 2, p. 102-117  Abstract
  8. 65.
    M. Pradas-Juni, N. R. Hansmeier, J.C. Link, E. Schmidt, B.D. Larsen, P. Klemm, N. Meola, H. Topel, R. Loureiro, I. Dhaouadi, C.A. Kiefer, R. Schwarzer, S. Khani, M. Oliverio, M. Awazawa, P. Frommolt, J. Heeren, L. Scheja, M. Heine, C. Dieterich, H. Büning, L. Yang, H. Cao, D. F. De Jesus, R.N. Kulkarni, Branko Zevnik, S.E. Tröder, U. Knippschild, P.A. Edwards, R.G. Lee, M. Yamamoto, I. Ulitsky, E. Fernandez-Rebollo, T.Q. de Aguiar Vallim and J.W. Kornfeld. , Jan 2020, Nature Communications. 11, p. 644  Abstract
  9. 64.
    H. Hezroni, R. Ben Tov Perry, I. Ulitsky, Jan 2020, Cold Spring Harbor Symposia on Quantitative Biology. In press,  Abstract

2019

  1. 63.
    L. Geirsdottir, E. David, H. Keren-Shaul, A. Weiner, S.C. Bohlen, J. Neuber, A. Balic, A. Giladi, F. Sheban, C.A. Dutertre, C. Pfeifle, F. Peri, A. Raffo-Romero, J. Vizioli, K. Matiasek, C. Scheiwe, S. Meckel, K. Mätz-Rensing, F. van der Meer, F. R. Thormodsson, C. Stadelmann, N. Zilkha, T. Kimchi, F. Ginhoux, I. Ulitsky, D. Erny, I. Amit and M. Prinz. , Dec 2019, Cell. 179, 7, p. 1609-1622  Abstract
  2. 62.
    A. Graindorge, I. Pinheiro, A. Mallory , P. Tsvetkov , N. Gil, C. Carolis, F. Buchholz, I. Ulitsky, E. Heard, M. Taipale and A. Shkumatava, Nov 2019, Nature Communications. 10, 1, p. 5317  Abstract
  3. 61.
    A. Rom, L. Melamed, N. Gil, M. Goldrich, R. Kadir, M. Golan, I. Biton, R. Ben-Tov Perry and I. Ulitsky. , Nov 2019, Nature Communications. 10, 1, p. 5092  Abstract
  4. 60.
    J.P. Monteiro, M. Bennett, J. Rodor, A. Caudrillier, I. Ulitsky, and A.H. Baker., Oct 2019, Cardiovascular Research. 115, 12, p. 1692-1704  Abstract
  5. 59.
    49. A.D. Mahmoud, M.D. Ballantyne, V. Miscianinov, K. Pinel, J. Hung, J. Scanlon, J. Iyinikkel, J. Kaczynski, A.S. Tavares, A.C. Bradshaw, N.L. Mills, D.E. Newby, A. Caporali, G. W. Gould, S.J. George, I. Ulitsky, J.C. Slumier, J. Rodor and A.H. Baker., Jul 2019, Circulation Research. 125, 5, p. 525-551  Abstract
  6. 58.
    T.A. Hait, A. Maron-Katz, D. Sagir, D. Amar, I. Ulitsky, C. Linhart, R. Sharan, Y. Shiloh, R. Elkon and R. Shamir, Jun 2019, Journal of Molecular Biology. 431, 13, p. 2398-2406  Abstract
  7. 57.
    F. Carvalhal Marques and I. Ulitsky , Apr 2019, eLife. 8, p. e45974  Abstract
  8. 56.
    C. Ciolli Mattioli, A. Rom, V. Franke, K. Imami, G. Tane, M. Terne; A. Woehler, A. Akalin, I. Ulitsky and M. Chekulaeva. , Mar 2019, Nucleic Acids Research. 47, 5, p. 2560-2573  Abstract
  9. 55.
    Zuckerman B, Ulitsky I , Feb 2019, RNA. 25, 5, p. 557-572  Abstract

2018

  1. 54.
    Silberman A; Goldman O; Boukobza Assayag O et al., Dec 2018, Cancer Research.  Abstract [All authors]
  2. 53.
    Perry, RBT; Hezroni, H; Goldrich MJ; Ulitsky I, Oct 2018, Molecular Cell. 72, 3, p. 553-567.E5  Abstract
  3. 52.
    Agarwal, V; Subtelny, AO; Thiru, P; Ulitsky, I; Bartel, DP, Sep 2018, Genome Biology. 19, 1, p. 19(1):152  Abstract
  4. 51.
    Gil, N., Ulitsky, I, Jun 2018, Cell Systems. 7, 5, p. 537-547  Abstract
  5. 50.
    Arandkar, S; Furth, N; Elisha, Y et al., Jun 2018, PNAS. 115, 25, p. 6410-6415  Abstract [All authors]
  6. 49.
    Ulitsky, I, May 2018, FEBS Letters. In Press,  Abstract
  7. 48.
    Haimon, Z; Volaski, A; Orthgiess, J et al., May 2018, Nature Immunology. 19, 6, p. 636-644  Abstract [All authors]
  8. 47.
    Lubelsky Y and Ulitsky I, Mar 2018, Nature. 555, 7694, p. 107-111  Abstract
  9. 46.
    Tichon A; Ben-Tov Perry R; Stojic L; Ulitsky I, Jan 2018, Genes & Development. 32, 1, p. 70-78  Abstract

2017

  1. 45.
    Hezroni, H; Ben-Tov Perry, R; Meir, Z; Housman, G; Lubelsky, Y; Ulitsky, I, Dec 2017, Genome Biology. 18, p. 162  Abstract
  2. 44.
    4. Marín-Béjar O, Mas AM, González J, Martinez D, Athie A, Morales X, Galduroz M, Raimondi I, Grossi E, Guo S, Rouzaut A, Ulitsky I, Huarte M., Dec 2017, Genome Biology. 18, 1, p. 202  Abstract
  3. 43.
    Shamir R; Klein C; Amar D et al., Dec 2017, Neurology. 89, 16, p. 1676-1683  Abstract [All authors]
  4. 42.
    Tamarkin-Ben-Harush, A; Vasseur, JJ; Debart, F; Ulitsky, I; Dikstein, R, Dec 2017, eLife. 6,  Abstract
  5. 41.
    Haimov, O; Sinvani, H; Martin, F; Ulitsky, I; Emmanuel, R; Tamarkin-Ben-Harush, A; Vardy, A; Dikstein, R, Dec 2017, Molecular and Cellular Biology. 37,  Abstract
  6. 40.
    Ushakov, K; Koffler-Brill, T; Rom, A; Perl, K; Ulitsky, I; Avraham, KB, Dec 2017, Scientific Reports. 7,  Abstract

2016

  1. 39.
    Housman, G; Ulitsky, I, Dec 2016, BBA - Gene Regulatory Mechanisms. 1859, p. 31-40  Abstract
  2. 38.
    Tichon, Ailone; Gil, Noa; Lubelsky, Yoav; Havkin Solomon, Tal; Lemze, Doron; Itzkovitz, Shalev; Stern-Ginossar, Noam; Ulitsky, Igor, Dec 2016, Nature communications. 7,  Abstract
  3. 37.
    Sas-Chen, A; Aure, M R; Leibovich, L et al., Dec 2016, EMBO molecular medicine. 8,  Abstract [All authors]
  4. 36.
    Ulitsky, I, Dec 2016, Nature Reviews Genetics. 17, p. 601-614  Abstract
  5. 35.
    Perry, RB; Ulitsky, I, Dec 2016, Development. 143, p. 3882-3894

2015

  1. 34.
    Rabinovich, S; Adler, L; Yizhak, K et al., Dec 2015, Nature. 527, p. 379-+  Abstract [All authors]
  2. 33.
    Bahar-Halpern, K; Caspi, I; Lemze, D; Levy, M; Landen, S; Elinav, E; Ulitsky, I; Itzkovitz, S, Dec 2015, Cell Reports. 13, p. 2653-2662  Abstract
  3. 32.
    Enuka, Y; Lauriola, M; Feldman, ME; Sas-Chen, A; Ulitsky, I; Yarden, Y, Dec 2015, Nucleic Acids Research. 44, p. 1370-1383  Abstract
  4. 31.
    Hezroni, H; Koppstein, D; Schwartz, MG; Avrutin, A; Bartel, DP; Ulitsky, I, Dec 2015, Cell Reports. 11, p. 1110-1122  Abstract
  5. 30.
    Arafeh, R; Qutob, N; Emmanuel, R et al., Dec 2015, Nature Genetics. 47, p. 1408-+  Abstract [All authors]

2013

  1. 29.
    Ulitsky, I; Bartel, DP, Dec 2013, Cell. 154, p. 26-46  Abstract
  2. 28.
    Auyeung, VC; Ulitsky, I; McGeary, SE; Bartel, DP, Dec 2013, Cell. 152, p. 844-858  Abstract

2012

  1. 27.
    Ulitsky, I; Shkumatava, A; Jan, CH; Subtelny, AO; Koppstein, D; Bell, GW; Sive, H; Bartel, DP, Dec 2012, Genome Research. 22, p. 2054-2066  Abstract

2011

  1. 26.
    Elkan-Miller, T; Ulitsky, I; Hertzano, R et al., Dec 2011, PLoS One. 6,  Abstract [All authors]
  2. 25.
    Laurent, LC; Ulitsky, I; Slavin, I et al., Dec 2011, Cell Stem Cell. 8, p. 106-118  Abstract [All authors]
  3. 24.
    Paz, A; Brownstein, Z; Ber, Y et al., Dec 2011, Nucleic Acids Research. 39, p. D793-D799  Abstract [All authors]
  4. 23.
    Ulitsky, I; Shkumatava, A; Jan, CH; Sive, H; Bartel, DP, Dec 2011, Cell. 147, p. 1537-1550  Abstract
  5. 22.
    Marom, L; Ulitsky, I; Cabilly, Y; Shamir, R; Elroy-Stein, O, Dec 2011, PLoS One. 6,  Abstract

2010

  1. 21.
    Ulitsky, I; Krishnamurthy, A; Karp, RM; Shamir, R, Dec 2010, PLoS One. 5,  Abstract
  2. 20.
    Ulitsky, I; Laurent, LC; Shamir, R, Dec 2010, Nucleic Acids Research. 38,  Abstract
  3. 19.
    Aguilar, PS; Froehlich, F; Rehman, M et al., Dec 2010, Nature Structural & Molecular Biology. 17, p. 901-U175  Abstract [All authors]
  4. 18.
    Abraham, S; Sheridan, SD; Laurent, LC; Albert, K; Stubban, C; Ulitsky, I; Miller, B; Loring, JF; Rao, RR, Dec 2010, Biochemical and Biophysical Research Communications. 393, p. 211-216  Abstract
  5. 17.
    Romano, GH; Gurvich, Y; Lavi, O; Ulitsky, I; Shamir, R; Kupiec, M, Dec 2010, Molecular Systems Biology. 6,  Abstract
  6. 16.
    Ulitsky, I; Maron-Katz, A; Shavit, S et al., Dec 2010, Nature Protocols. 5, p. 303-322  Abstract [All authors]
  7. 15.
    Discovering Transcriptional Modules by Combined Analysis of Expression Profiles and Regulatory Sequences
    Halperin, Y; Linhart, C; Ulitsky, I; Shamir, R, Dec 2010, RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, PROCEEDINGS. 6044, p. 578-579

2009

  1. 14.
    Ulitsky, I; Shamir, R, Dec 2009, Bioinformatics. 25, p. 1158-1164  Abstract
  2. 13.
    Halperin, Y; Linhart, C; Ulitsky, I; Shamir, R, Dec 2009, Nucleic Acids Research. 37, p. 1566-1579  Abstract
  3. 12.
    Ulitsky, I; Krogan, NJ; Shamir, R, Dec 2009, Genome Biology. 10,  Abstract

2008

  1. 11.
    Detecting disease-specific dysregulated pathways via analysis of clinical expression profiles
    Ulitsky, I; Karp, RM; Shamir, R, Dec 2008, RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, PROCEEDINGS. 4955, p. 347-359  Abstract
  2. 10.
    Muller, FJ; Laurent, LC; Kostka, D et al., Dec 2008, Nature. 455, p. 401-U55  Abstract [All authors]
  3. 9.
    Ulitsky, I; Shlomi, T; Kupiec, M; Shamir, R, Dec 2008, Molecular Systems Biology. 4,  Abstract
  4. 8.
    Laurent, LC; Chen, J; Ulitsky, I; Mueller, FJ; Lu, C; Shamir, R; Fan, JB; Loring, JF, Dec 2008, Stem Cells. 26, p. 1506-1516  Abstract
  5. 7.
    Elkon, R; Vesterman, R; Amit, N et al., Dec 2008, BMC Bioinformatics. 9,  Abstract [All authors]
  6. 6.
    Ulitsky, I; Gat-Viks, I; Shamir, R, Dec 2008, Genome Biology. 9,  Abstract

2007

  1. 5.
    Ulitsky, I; Shamir, R, Dec 2007, Molecular Systems Biology. 3,  Abstract
  2. 4.
    Sharan, R; Ulitsky, I; Shamir, R, Dec 2007, Molecular Systems Biology. 3,  Abstract
  3. 3.
    Ulitsky, I; Shamir, R, Dec 2007, BMC Systems Biology. 1,  Abstract

2006

  1. 2.
    Ulitsky, I; Burstein, D; Tuller, T; Chor, B, Dec 2006, Journal of Computational Biology. 13, p. 336-350  Abstract

2005

  1. 1.
    Information theoretic approaches to whole genome phylogenies
    Burstein, D; Ulitsky, I; Tuller, T; Chor, B, Dec 2005, RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, PROCEEDINGS. 3500, p. 283-295  Abstract