Department of Biological Chemistry

Eitan Bibi, Head


The research activities of the Department of Biological Chemistry span several topics in the life sciences with overlapping interests. The common thread connecting these activities is the study of proteins in key biological processes ranging from transport across membranes and signal transduction, to gene expression and DNA repair. The department has more than 20 research groups whose activities are centered around the following six foci of interest:

  1. Protein science, including protein-protein interactions, protein-ligand interactions, evolution of enzymes, and understanding the composition of large complexes.
  2. Proteins involved in controlling DNA stability, repair and expression of genetic information.
  3. Structure and function of membrane proteins including ion channels, pumps, transports, enzymes, and molecular motors.
  4. Mechanisms by which proteins and lipids are transported from their point of synthesis, sorted, and inserted into various organelles.
  5. Signal transduction processes in bacteria, vertebrate, and invertebrate organisms, as well as molecular pathogenesis, nerve growth and regeneration,and cell differentiation.
  6. Biomolecular computers, including engineering of computers made of DNA and proteins, and their application to the analysis and synthesis of information present in biomolecules.

A variety of methodologies are being utilized, with an emphasis on biochemistry, biophysics, molecular genetics, advanced microscopy, and computation methods. Additional information can be obtained in the department's Home Page.


E. Bayer

Structural and functional aspects of the multi-enzyme cellulosome complex from cellulose-degrading bacteria.

  1.  The cohesin-dockerin couple - Protein-protein interactions that mediate recognition and specificity in cellulosome assembly.

  2.  Cellulose-binding domains as models for protein-sugar interactions.

  3.  Structure determination and comparative genomics of cellulosome components.

  4.  Nanosome technology - Selective engineering of chimaeric cellulosome constructs for nanotechnology.

  5.  Avidin-biotin system - Mutated avidins and streptavidins


E. Bibi

Structure/function studies of the E. coli multidrug transporter, MdfA.
E. Bibi, N. Fluman

  1.  The multidrug recognition pocket of MdfA (genetic and biochemical studies)

  2.  3D crystallization of MdfA

  3.  Mechanism of MdfA-mediated multidrug transport (proton/drug antiport)

The signal recognition particle (SRP) system in Escherichia coli and its role in membrane protein biogenesis:
E. Bibi, E.S. Bochkareva, L. Bahari, I. Yosef

  1.  FtsY, the essential prokaryotic SRP-receptor: its role in biogenesis of membrane proteins.

  2.  Structure-function studies on the GTPase (NG) domain of FtsY.

  3.  Membrane targeting and association of ribosomes in E. coli.

Intra-membrane quality control
E. Bibi, E. Erez

  1.  Genetic screens aimed at the identification of intra-membrane quality control pathways and factors

  2.  Intra-membrane proteolysis by the rhomboid serine protease GlpG


R. Dikstein

Transcription regulation: the mechanisms of basal and activated transcription

  1.  Molecular characterization of the general transcription factor TFIID

  2.  The mammalian core promoter diversity

  3.  Links between transcription and post transcriptional stages of gene experssion.

  4.  Mechanism of rapid transcriptional induction of NF-kappaB target genes.


M. Eisenbach

Thermotaxis of mammalian sperm cells: molecular mechanism

Chemotaxis of mammalian sperm cells

  1.  Kinematics of sperm chemotaxis

  2.  Molecular mechanism of sperm chemotaxis

Chemotaxis of bacteria

  1.  Molecular mechanisms of sensing, signaling and response

  2.  Molecular mechanism of function of the switch of the bacterial flagellar motor


Z. Elazar

Molecular mechanisms of intracellular protein traffic

  1.  Isolation and characterization of novel proteins regulating targeting and fusion between transport vesicles and their target membranes.

  2.  Involvement of small GTP binding proteins of the Rab-family in vesicular transport.

  3.  Regulation of autophagocytosis in yeast and mammalian cells.


M. Fainzilber

Molecular mechanisms underlying nerve growth and regeneration

  1.  Retrograde signaling mechanisms in healthy, diseased or injured neurons.

  2.  Molecular mechanisms of axonal communication and neuronal regeneration.

  3.  Signaling and trafficking of neurotrophin-receptor complexes.


A. Futerman

The molecular mechanisms of sphingolipid storage diseases (Gaucher, Niemann-Pick, and Tay-Sachs disease).

The regulation of ceramide synthesis by LASS gene family members

Sphingolipid signaling during neuronal development.


H. Garty

Regulation of epithelial ion transport:

  1.  FXYD proteins as tissue specific regulators of the Na+/K+ ATPase.

  2.  Kinases mediating hormonal regulation of epithelial ion-transport.

  3.  Identification of aldosterone regulated genes involved in ionic homeostasis


S. Karlish

Crystalization and function of Na/K-ATPase.

Regulation of Na/K-ATPase by FXYD proteins.

Molecular mechanisms involved in generation of essential hypertension.

Development of isoform-selective drugs


Z. Livneh

Molecular and cellular analysis of error prone DNA repair (translesion DNA synthesis) in mammals

DNA repair biomarkers for risk assessment and early detection of cancer

DNA damage tolerance via homologous recombination repair in mammals.

Mechanisms and biomedical applications of DNA repair.


D. Mirelman

Molecular pathogenesis of the human intestinal parasite Entamoeba histolytica.
D. Mirelman, Rivka Bracha

  1.  Molecular biology and genome organization in the lower eukaryot Entamoeba histolytica.

  2.  Selective inhibition of expression of virulence genes by Antisense RNA.

  3.  Transcriptional epigenetic gene silencing mechanisms

  4.  Pathogenesis of Amoebiasis

  5.  Development of vaccine against Entamoeba histolytica.

Mode of action and therapeutical potential of Allicin from Garlic
D. Mirelman, Aharon Rabinkov, Elena Appel

  1.  Uses of derivatives of Allicin against hypertension and obesity

  2.  Antifungal delivery system which produces in situ toxic allicin molecules

  3.  A delivery system for the in-vivo killing of cancer cells by Allicin


U. Pick

Regulation of massive β-carotene synthesis in Dunaliella bardawil and its industrial utilization.

Cold acclimation and cold-induced proteins in Dunaliella.

Iron uptake by an algal transferrin.

Structure and function of salt-resistant proteins.

H+ and Na+ transporters in the halotolerant alga Dunaliella.


Z. Reich

Nuclear pore complex (NPC)-mediated macromolecular transport

  1.  Transport mechanics, dynamics and energetics.

  2.  Nuclear pore proteins: molecular and biophysical characterization.

  3.  Nuclear import of exogenous DNA: implications for human gene therapy.


E. Reuveny

Structural and functional studies of ion channels in health and disease

  1.  Biophysical analysis of the gating and permeation using electrophysiological approaches (patch clamp).

  2.  Regulation of cellular distribution and signaling specificity by ion channels-associated proteins using biochemical approaches.

  3.  Conformational dynamics of ion channels associated with activation using novel fluorescence-based measuring techniques.

  4.  The role of the G protein coupled potassium channel in insulin secretion.


G. Schreiber

Protein-protein interactions, from basic biophysical understanding to protein design and structure-function relation.

  1.  Rational design of faster associating and tighter binding protein complexes.

  2.  Evaluation of direct and cooperative contributions towards the strength of non-covalent protein-protein interactions

  3.  Structure-function studies of the interaction of interferon and its receptors, towards understanding the biophysical basis of heterogeneous receptor activation by a family of hormones.

  4.  Bioinformatics of Protein-Protein interactions


Y. Shai

Membrane-protein interaction and molecular recognition within the membrane milieu. Implication to the function and structure of membrane proteins.

  1.  Assembly and organization of pore forming toxins and ion channels in membranes: Studies with isolated fragments and intact proteins.

  2.  Molecular mechanism of membrane fusion and its inhibition: Studies with HIV and Sendai Virus.

  3.  Molecular basis for cell selectivity by cytolytic antimicrobial peptides.


E. Shapiro

Biomolecular computing and its medical applications


M. Sharon

Studying large protein complexes involved in the protein degradation pathway using a novel mass spectrometry approach.

  1.  Elucidating the subunit organization of the 19S complex

  2.  Structure-function relationship of the signalosome complex

  3.  Investigation of the 20S ubiquitin-independent degradation pathway


Y. Shechter

Mechanism of insulin action: Post-binding events in insulin action

  1.  Post-receptor agents mimicking insulin.

  2.  Effect of vanadium in vivo and in vitro.

  3.  Role of protein tyrosine kinases and protein phosphotyrosine phosphatases in insulin effects.

  4.  Inhibitors of tyrosine kinases.

  5.  Chemical modifications of peptides and protein drugs.

  6.  Novel technologies to prolong life time of peptide and protein drugs.


D. Tawfik

Evolution and mechanism of enzymes

  1.  Molecular evolution in man-made cell-like compartments.

  2.  Directed evolution of tailor-made hydrolases (esterases, phosphoesterases, organophosphate hydrolases, and amidases) and DNA-modifying enzymes.

  3.  Structure, mechanism and evolution of serum paraoxonases (PONs)

  4.  The role of promiscuity and conformational plasticity in protein evolution.

  5.  Directed evolution of DNA-methyltransferases and DNase inhibitors


M. Walker

Selective gene expression in pancreatic beta cells:

  1.  Role of specific transcription factors in expression of the insulin gene in pancreatic beta cells and in control of pancreatic development.

  2.  Novel beta cell specific genes: isolation, characterization and use as potential tools in diagnosis and therapy of diabetes.


D. Wallach

Regulation of cell death and tissue damage:

  1.  Proteins involved in the signaling for the cell-killing (apoptotic), growth-stimulatory, and inflammatory functions of cytokines of the tumor necrosis factor (TNF) family, and in the regulation of these functions.

  2.  In vivo models for the functions of the signaling mechanisms activated by ligands of the TNF family and for their pathological aberrations.

  3.  Natural antagonists to ligands of the TNF family, for protection against the deleterious effects of these cytokines in autoimmune and infectious diseases.

  4.  Regulation of the activity of the NF kappa B transcription factors.

  5.  The caspases, their functions and mechanisms of activation.


A. Yaron

Guidance mechanisms of sensory axons

Signaling mechanisms of repulsive axonal guidance cues