Publications

2019

92.
Mazal H. & Haran G. (2019). Single-molecule FRET methods to study the dynamics of proteins at work.  Current Opinion in Biomedical Engineering. 12:8-17.
91.
Mazal H. & Haran G. (2019). Single-molecule FRET methods to study the dynamics of proteins at work.  Current Opinion in Biomedical Engineering.
90.
Varsano N., Beghi F., Dadosh T., Elad N., Pereiro E., Haran G., Leiserowitz L. & Addadi L. (2019). The Effect of the Phospholipid Bilayer Environment on Cholesterol Crystal Polymorphism.  ChemPlusChem. 84:(4)338-344.
89.
Varsano N., Beghi F., Dadosh T., Elad N., Pereiro E., Haran G., Leiserowitz L. & Addadi L. (2019). The Effect of the Phospholipid Bilayer Environment on Cholesterol Crystal Polymorphism [Cover Profile].  ChemPlusChem. 84:(4)317-317.
88.
Mazal H., Iljina M., Barak Y., Elad N., Rosenzweig R., Goloubinoff P., Riven I. & Haran G. (2019). Tunable microsecond dynamics of an allosteric switch regulate the activity of a AAA+ disaggregation machine.  Nature Communications. 10:(1)
87.
Bitton O., Gupta S. N. & Haran G. (2019). Quantum dot plasmonics: from weak to strong coupling.  Nanophotonics. 8:(4)559-575.

2018

86.
Kantaev R., Riven I., Goldenzweig A., Barak Y., Dym O., Peleg Y., Albeck S., Fleishman S. J. & Haran G. (2018). Manipulating the Folding Landscape of a Multi-Domain Protein.  Journal of Physical Chemistry B. 122:(49)11030-11038.
85.
Haran G. & Chuntonov L. (2018). Artificial Plasmonic Molecules and Their Interaction with Real Molecules.  Chemical Reviews. 118:(11)5539-5580.
84.
Aviram H. Y., Pirchi M., Barak Y., Riven I. & Haran G. (2018). Two states or not two states: Single-molecule folding studies of protein L.  Journal of Chemical Physics. 148:(12)123303.
83.
Taylor J. N., Pirchi M., Haran G. & Komatsuzaki T. (2018). Deciphering hierarchical features in the energy landscape of adenylate kinase folding/unfolding.  Journal of Chemical Physics. 148:(12)123325.
82.
Aviram H. Y., Pirchi M., Mazal H., Barak Y., Riven I. & Haran G. (2018). Direct observation of ultrafast large-scale dynamics of an enzyme under turnover conditions.  Proceedings Of The National Academy Of Sciences Of The United States Of America-Biological Sciences. 115:(13)3243-3248.
81.
Schoch R. L., Barel I., Brown F. L. H. & Haran G. (2018). Lipid diffusion in the distal and proximal leaflets of supported lipid bilayer membranes studied by single particle tracking.  Journal of Chemical Physics. 148:(12)
80.
Mazal H., Aviram H., Riven I. & Haran G. (2018). Effect of ligand binding on a protein with a complex folding landscape.  Physical Chemistry Chemical Physics. 20:(5)3054-3062.

2017

79.
Ozer E., Chemla Y., Schlesinger O., Aviram H. Y., Riven I., Haran G. & Alfonta L. (2017). In Vitro Suppression of Two Different Stop Codons.  Biotechnology and Bioengineering. 114:(5)1065-1073.
78.
Ozer E., Chemla Y., Schlesinger O., Aviram H. Y., Riven I., Haran G. & Alfonta L. (2017). Cover Image, Volume 114, Number 5, May 2017.  Biotechnology and Bioengineering. 114:(5)i.

2016

77.
Jung Y., Riven I., Feigelson S., Kartvelishvily E., Tohya K., Miyasaka M., Alon R. & Haran G. (2016). Three-dimensional localization of T-cell receptors in relation to microvilli using a combination of superresolution microscopies.  Proceedings of the National Academy of Sciences of the United States of America. 113:(40)E5916-E5924.
76.
Santhosh K., Bitton O., Chuntonov L. & Haran G. (2016). Vacuum Rabi splitting in a plasmonic cavity at the single quantum emitter limit.  Nature Communications. 7:ncomms11823.
75.
Pirchi M., Tsukanov R., Khamis R., Tomov T. E., Berger Y., Khara D. C., Volkov H., Haran G. & Nir E. (2016). Photon-by-Photon Hidden Markov Model Analysis for Microsecond Single-Molecule FRET Kinetics.  Journal of Physical Chemistry B. 120:(51)13065-13075.

2015

74.
Lindhoud S., Pirchi M., Westphal A. H., Haran G. & Van Mierlo M. C. P. M. (2015). Gradual Folding of an Off-Pathway Molten Globule Detected at the Single-Molecule Level.  Journal of Molecular Biology. 427:(19)3148-3157.
73.
Cohen S. S., Riyen I., Cortajarena A. L., De Rosa R. L., D'Andrea L. D., Regan L. & Haran G. (2015). Probing the Molecular Origin of Native-State Flexibility in Repeat Proteins.  Journal of the American Chemical Society. 137:(32)10367-10373.
72.
Grossman I., Yuval Aviram A. H., Armony G., Horovitz A., Hofmann H., Haran G. & Fass D. (2015). Single-molecule spectroscopy exposes hidden states in an enzymatic electron relay.  Nature Communications. 6:8624.

2014

71.
Zohar N., Chuntonov L. & Haran G. (2014). The simplest plasmonic molecules: Metal nanoparticle dimers and trimers.  Journal Of Photochemistry And Photobiology C-Photochemistry Reviews. 21:26-39.
70.
Zohar N. & Haran G. (2014). Modular Plasmonic Antennas Built of Ultrathin Silica-Shell Silver-Core Nanoparticles.  Langmuir. 30:(26)7919-7927.
69.
Chuntonov L. & Haran G. (2014). Effect of Nanoparticle Symmetry on Plasmonic Fields: Implications for Single-Molecule Raman Scattering.  Frontiers of Surface-Enhanced Raman Scattering: Single Nanoparticles and Single Cells. 37-57.

2013

68.
Ott M., Shai Y. & Haran G. (2013). Single-Particle Tracking Reveals Switching of the HIV Fusion Peptide between Two Diffusive Modes in Membranes.  Journal of Physical Chemistry B. 117:(42)13308-13321.
67.
Chuntonov L. & Haran G. (2013). Optical activity in single-molecule surface-enhanced Raman scattering: Role of symmetry.  MRS Bulletin. 38:(8)642-647.
66.
Haran M., Schattner A., Mate A., Starobin D., Haran G. & Shtalrid M. (2013). Can a rare form of myasthenia gravis shed additional light on disease mechanisms?.  Clinical Neurology and Neurosurgery. 115:(5)562-566.
65.
Chuntonov L. & Haran G. (2013). Maximal Raman Optical Activity in Hybrid Single Molecule-Plasmonic Nanostructures with Multiple Dipolar Resonances.  Nano Letters. 13:(3)1285-1290.

2012

64.
Alon A., Grossman I., Gat Y., Kodali V. K., Dimaio F., Mehlman T., Haran G., Baker D., Thorpe C. & Fass D. (2012). The dynamic disulphide relay of quiescin sulphydryl oxidase.  Nature. 488:(7411)414-418.
63.
Piwonski H. M., Goomanovsky M., Bensimon D., Horovitz A. & Haran G. (2012). Allosteric inhibition of individual enzyme molecules trapped in lipid vesicles.  Proceedings of the National Academy of Sciences of the United States of America. 109:(22)E1437-E1443.
62.
Yoo T. Y., Meisburger S. P., Hinshaw J., Pollack L., Haran G., Sosnick T. R. & Plaxco K. (2012). Small-Angle X-ray Scattering and Single-Molecule FRET Spectroscopy Produce Highly Divergent Views of the Low-Denaturant Unfolded State.  Journal of Molecular Biology. 418:(4-Mar)226-236.
61.
Bavli D., Tkachev M., Piwonski H., Capua E., De Albuquerque A. I., Bensimon D., Haran G. & Naaman R. (2012). Detection and Quantification through a Lipid Membrane Using the Molecularly Controlled Semiconductor Resistor.  Langmuir. 28:(1)1020-1028.
60.
Chuntonov L., Bar Sadan S. M., Houben L. & Haran G. (2012). Correlating Electron Tomography and Plasmon Spectroscopy of Single Noble Metal Core-Shell Nanoparticles.  Nano Letters. 12:(1)145-150.
59.
Frank G. A., Horovitz A. & Haran G. (2012). Fluorescence Correlation Spectroscopy and Allostery: The Case of GroEL.  Allostery: Methods And Protocols. 205-216.

2011

58.
Tesler A. B., Chuntonov L., Karakouz T., Bendikov T. A., Haran G., Vaskevich A. & Rubinstein I. (2011). Tunable Localized Plasmon Transducers Prepared by Thermal Dewetting of Percolated Evaporated Gold Films.  Journal of Physical Chemistry C. 115:(50)24642-24652.
57.
Pirchi M., Ziv G., Riven I., Cohen S. S., Zohar N., Barak Y. & Haran G. (2011). Single-molecule fluorescence spectroscopy maps the folding landscape of a large protein.  Nature Communications. 2.
56.
Chuntonov L. & Haran G. (2011). Effect of Symmetry Breaking on the Mode Structure of Trimeric Plasmonic Molecules.  Journal of Physical Chemistry C. 115:(40)19488-19495.
55.
Chuntonov L. & Haran G. (2011). Erratum: Trimeric plasmonic molecules: The role of symmetry (Nano Letters, 2011, 11, 2440-2445).  Nano Letters. 11:(10)
54.
Chuntonov L. & Haran G. (2011). Trimeric Plasmonic Molecules: The Role of Symmetry.  Nano Letters. 11:(6)2440-2445.
53.
Lombardi J. R., Birke R. L. & Haran G. (2011). Single Molecule SERS Spectral Blinking and Vibronic Coupling.  Journal of Physical Chemistry C. 115:(11)4540-4545.
52.
Sherman E. & Haran G. (2011). Fluorescence Correlation Spectroscopy of Fast Chain Dynamics within Denatured Protein L.  ChemPhysChem. 12:(3)696-703.
51.
England J. L. & Haran G. (2011). Role of Solvation Effects in Protein Denaturation: From Thermodynamics to Single Molecules and Back.  Annual Review Of Physical Chemistry, Vol 62. 257-277.

2010

50.
Haran G. (2010). Single-Molecule Raman Spectroscopy: A Probe of Surface Dynamics and Plasmonic Fields.  Accounts of Chemical Research. 43:(8)1135-1143.
49.
England J. L. & Haran G. (2010). To fold or expand-a charged question.  Proceedings of the National Academy of Sciences of the United States of America. 107:(33)14519-14520.
48.
Haran G. (2010). Targeting Non-Fluorescent Molecules by Nonlinear Optical Imaging.  ChemPhysChem. 11:(8)1619-1622.
47.
Frank G. A., Goomanovsky M., Davidi A., Ziv G., Horovitz A. & Haran G. (2010). Out-of-equilibrium conformational cycling of GroEL under saturating ATP concentrations.  Proceedings of the National Academy of Sciences of the United States of America. 107:(14)6270-6274.

2009

46.
Shegai T., Vaskevich A., Rubinstein I. & Haran G. (2009). Raman Spectroelectrochemistry of Molecules within Individual Electromagnetic Hot Spots.  Journal of the American Chemical Society. 131:(40)14390-14398.
45.
Phillip Y., Sherman E., Haran G. & Schreiber G. (2009). Common Crowding Agents Have Only a Small Effect on Protein-Protein Interactions.  Biophysical Journal. 97:(3)875-885.
44.
Dadosh T., Sperling J., Bryant G. W., Breslow R., Shegai T., Dyshel M., Haran G. & Bar-Joseph I. (2009). Plasmonic Control of the Shape of the Raman Spectrum of a Single Molecule in a Silver Nanoparticle Dimer.  ACS Nano. 3:(7)1988-1994.
43.
Ziv G. & Haran G. (2009). Protein Folding, Protein Collapse, and Tanford's Transfer Model: Lessons from Single-Molecule FRET.  Journal of the American Chemical Society. 131:(8)2942-2947.
42.
Schreiber G., Haran G. & Zhou H. (2009). Fundamental Aspects of Protein-Protein Association Kinetics.  Chemical Reviews. 109:(3)839-860.
41.
Li Z., Shegai T., Haran G. & Xu H. (2009). Multiple-Particle Nanoantennas for Enormous Enhancement and Polarization Control of Light Emission.  ACS Nano. 3:(3)637-642.
40.
Ziv G., Thirumalai D. & Haran G. (2009). Collapse transition in proteins.  Physical Chemistry Chemical Physics. 11:(1)83-93.
39.
Wei H., Li Z., Fang Y., Hao F., Shegai T., Dadosh T., Huang Y., Wang W., Zhang Z., Haran G., Nordlander P. & Xu H. (2009). Control light propagation and polarization with plasmons for surface-enhanced Raman scattering.  Plasmonics: Nanoimaging, Nanofabrication, and Their Applications v. 7395.

2008

38.
Mor A., Haran G. & Levy Y. (2008). Characterization of the unfolded state of repeat proteins.  Frontiers in Life Science. 2:(6)405-415.
37.
Shegai T., Li Z., Dadosh T., Zhang Z., Xu H. & Haran G. (2008). Managing light polarization via plasmon-molecule interactions within an asymmetric metal nanoparticle trimer.  Proceedings of the National Academy of Sciences of the United States of America. 105:(43)16448-16453.
36.
Cortajarena A. L., Lois G., Sherman E., O'Hern C. S., Regan L. & Haran G. (2008). Non-random-coil behavior as a consequence of extensive PPII structure in the denatured state.  Journal of Molecular Biology. 382:(1)203-212.
35.
O'Brien E. P., Ziv G., Haran G., Brooks B. R. & Thirumalai D. (2008). Effects of denaturants and osmolytes on proteins are accurately predicted by the molecular transfer model.  Proceedings of the National Academy of Sciences of the United States of America. 105:(36)13403-13408.
34.
England J. L., Pande V. S. & Haran G. (2008). Chemical denaturants inhibit the onset of dewetting.  Journal of the American Chemical Society. 130:(36)11854-11855.
33.
Paz A., Zeev-Ben-Mordehai T., Lundqvist M., Sherman E., Mylonas E., Weiner L., Haran G., Svergun D. I., Mulder F. A. A., Sussman J. & Silman I. (2008). Biophysical Characterization Of The Unstructured Cytoplasmic Domain Of The Human Neuronal Adhesion Protein Neuroligin 3.  Biophysical Journal. 95:(4)1928-1944.
32.
Papo N., Kipnis Y., Haran G. & Horovitz A. (2008). Concerted release of substrate domains from GroEL by ATP is demonstrated with FRET.  Journal of Molecular Biology. 380:(4)717-725.
31.
Frank G. A., Kipnis Y., Smolensky E., Daube S. S., Horovitz A. & Haran G. (2008). Design of an optical switch for studying conformational dynamics in individual molecules of GroEL.  Bioconjugate Chemistry. 19:(7)1339-1341.
30.
Sherman E., Itkin A., Kuttner Y. Y., Rhoades E., Amir D., Haas E. & Haran G. (2008). Using fluorescence correlation spectroscopy to study conformational changes in denatured proteins.  Biophysical Journal. 94:(12)4819-4827.

2007

29.
Kozer N., Kuttner Y. Y., Haran G. & Schreiber G. (2007). Protein-protein association in polymer solutions: From dilute to semidilute to concentrated.  Biophysical Journal. 92:(6)2139-2149.
28.
Kipnis Y., Papo N., Haran G. & Horovitz A. (2007). Concerted ATP-induced allosteric transitions in GroEL facilitate release of protein substrate domains in an all-or-none manner.  Proceedings of the National Academy of Sciences of the United States of America. 104:(9)3119-3124.

2006

27.
Sherman E. & Haran G. (2006). Coil-globule transition in the denatured state of a small protein.  Proceedings of the National Academy of Sciences of the United States of America. 103:(31)11539-11543.
26.
Shegai T. & Haran G. (2006). Probing the Raman scattering tensors of individual molecules.  Journal of Physical Chemistry B. 110:(6)2459-2461.

2005

25.
Ziv G., Haran G. & Thirumalai D. (2005). Ribosome exit tunnel can entropically stabilize alpha-helices.  Proceedings of the National Academy of Sciences of the United States of America. 102:(52)18956-18961.
24.
Sharaabi Y., Shegai T. & Haran G. (2005). Two-state analysis of single-molecule Raman spectra of crystal violet.  Chemical Physics. 318:(2-Jan)44-49.
23.
Kuttner Y., Kozer N., Segal E., Schreiber G. & Haran G. (2005). Separating the contribution of translational and rotational diffusion to protein association.  Journal of the American Chemical Society. 127:(43)15138-15144.
22.
Haran G. & Vohringer P. (2005). The coming of age.  ChemPhysChem. 6:(5)755-758.

2004

21.
Haran G. (2004). Noise reduction in single-molecule fluorescence trajectories of folding proteins.  Chemical Physics. 307:(3-Feb)137-145.
20.
Rhoades E., Cohen M., Schuler B. & Haran G. (2004). Two-state folding observed in individual protein molecules.  Journal of the American Chemical Society. 126:(45)14686-14687.
19.
Tucker W., Schwarz A., Levine T., Du Z., Gromet-Elhanan Z., Richter M. & Haran G. (2004). Observation of calcium-dependent unidirectional rotational motion in recombinant photosynthetic F-1-ATPase molecules.  Journal of Biological Chemistry. 279:(46)47415-47418.
18.
Haran G. & Vohringer P. (2004). Optical spectroscopy of biomolecular dynamics.  . 1311-1313.

2003

17.
Haran G. (2003). Single-molecule fluorescence spectroscopy of biomolecular folding.  Journal Of Physics-Condensed Matter. 15:(32)R1291-R1317.
16.
Rhoades E., Gussakovsky E. & Haran G. (2003). Erratum: Watching proteins fold one molecule at a time (Proceedings of the National Academy of Sciences of the United States of America (March 18, 2003) 100:6 (3197-3202)).  Proceedings of the National Academy of Sciences of the United States of America. 100:(12)
15.
Lukatsky D., Haran G. & Safran S. (2003). Slow fluctuations in enhanced Raman scattering and surface roughness relaxation.  Physical Review E. 67:(6)

2001

14.
Boukobza E., Sonnenfeld A. & Haran G. (2001). Immobilization in surface-tethered lipid vesicles as a new tool for single biomolecule spectroscopy.  Journal Of Physical Chemistry B. 105:(48)12165-12170.
13.
Weiss A. & Haran G. (2001). Time-dependent single-molecule Raman scattering as a probe of surface dynamics.  Journal Of Physical Chemistry B. 105:(49)12348-12354.
12.
Wang Y., Astilean S., Haran G. & Warshawsky A. (2001). Microenviromental investigation of polymer-bound fluorescent chelator by fluorescence microscopy and optical spectroscopy.  Analytical Chemistry. 73:(17)4096-4103.

1999

11.
Haran G., Morlino E., Matthes J., Callender R. & Hochstrasser R. (1999). Femtosecond polarized pump-probe and stimulated emission spectroscopy of the isomerization reaction of rhodopsin.  Journal of Physical Chemistry A. 103:(14)2202-2207.

1998

10.
Bopp M., Jia Y., Haran G., Morlino E. & Hochstrasser R. (1998). Single-molecule spectroscopy with 27 fs pulses: Time-resolved experiments and direct imaging of orientational distributions.  Applied Physics Letters. 73:(1)7-9.

1997

9.
Haran G., Sun W., Wynne K. & Hochstrasser R. (1997). Femtosecond far-infrared pump-probe spectroscopy: A new tool for studying low-frequency vibrational dynamics in molecular condensed phases.  Chemical Physics Letters. 274:(4)365-371.

1996

8.
Haran G., Wynne K., Moser C. C., Dutton P. L. & Hochstrasser R. M. (1996). Femtosecond infrared studies of photosynthetic reaction centers: New charge transfer bands and ultrafast energy redistribution.  Springer Series in Chemical Physics. 62:326-327.
7.
Haran G., Wynne K., Xie A., He Q., Chance M. & Hochstrasser R. (1996). Excited state dynamics of bacteriorhodopsin revealed by transient stimulated emission spectra.  Chemical Physics Letters. 261:(4-5)389-395.
6.
Wynne K., Haran G., Reid G., Moser C., Dutton P. & Hochstrasser R. (1996). Femtosecond infrared spectroscopy of low-lying excited states in reaction centers of Rhodobacter sphaeroides.  Journal of Physical Chemistry. 100:(12)5140-5148.
5.
Haran G., Wynne K., Moser C., Dutton P. & Hochstrasser R. (1996). Level mixing and energy redistribution in bacterial photosynthetic reaction centers.  Journal of Physical Chemistry. 100:(13)5562-5569.

1994

4.
Haran G., Haas E. & Rapaport D. (1994). Molecular-Dynamics Simulations of Simple Peptide Models - Solvent Effects and Comparison With Experiment.  Journal of Physical Chemistry. 98:(40)10294-10302.
3.
Dittes K., Gakamsky D., Haran G., Haas E., Ojcius D., Kourilsky P. & Pecht I. (1994). Picosecond Fluorescence Spectroscopy of a Single-Chain Class-i Major Histocompatibility Complex Encoded Protein in Its Peptide Loaded and Unloaded States.  Immunology Letters. 40:(2)125-132.

1993

2.
Haran G., Cohen R., Bar L. K. & Barenholz Y. (1993). Transmembrane ammonium sulfate gradients in liposomes produce efficient and stable entrapment of amphipathic weak bases.  BBA - Biomembranes. 1151:(2)201-215.

1992

1.
Haran G., Haas E., Szpikowska B. & Mas M. (1992). Domain Motions in Phosphoglycerate Kinase - Determination of Interdomain Distance Distributions by Site-Specific Labeling and Time-Resolved Fluorescence Energy-Transfer.  Proceedings of the National Academy of Sciences of the United States of America. 89:(24)11764-11768.