Publications

  1. Chuntonov L & Haran G Maximal Raman optical activity in hybrid single molecule-plasmonic nanostructures with multiple dipolar resonances , Nano Lett 13(3):1285-1290 (2013); [PDF].
  2. Haran M, Schattner A, Mate A, Starobin D, Haran G, & Shtalrid M Can a rare form of myasthenia gravis shed additional light on disease mechanisms? , Clinical neurology and neurosurgery,DOI: 10.1016/j.clineuro.2012.06.038 (2012); [PDF].
  3. Alon A, Grossman I, Gat Y, Kodali VK, DiMaio F, Mehlman T, Haran G, Baker D, Thorpe C, & Fass D The dynamic disulphide relay of quiescin sulphydryl oxidase, Nature,488(7411):414-418 (2012); [PDF].
  4. Piwonski H.M., Goomanovsky M.,Bensimon D.,Horovitz A., Haran G. Allosteric inhibition of individual enzyme molecules trapped in lipid vesicles, Proceedings of the National Academy of Sciences of the United States of America,109(22):E1437-E1443 (2012); [PDF].
  5. Tae Yeon Y., Meisburger S.P., Hinshaw J., Pollack L., Haran G., Sosnick T.R. and Plaxco K. Small-Angle X-ray Scattering and Single-Molecule FRET Spectroscopy Produce Highly Divergent Views of the Low-Denaturant Unfolded State, Journal of Molecular Biology,418(3):226-236 (2012); [PDF].
  6. Bavli D., Tkachev M., Piwonski H., Capua E., de Albuquerque I., Bensimon D., Haran G., & Naaman R. Detection and Quantification through a Lipid Membrane Using the Molecularly Controlled Semiconductor Resistor, Langmuir 28(1):1020-1028, (2012); [PDF].
  7. Chuntonov L., Bar-Sadan M., Houben L., & Haran G. Correlating electron tomography and plasmon spectroscopy of single noble metal core-shell nanoparticles, Nano Letters 12(1):145-150, (2012); [PDF].
  8. Haran, G. How, when and why proteins collapse: the relation to folding, Current Opinion in Structural Biology 22:14-20, (2012); [PDF].
  9. Tesler AB., Chuntonov L., Karakouz T., Bendikov TA., Haran G., Vaskevich A., & Rubinstein I. Tunable Localized Plasmon Transducers Prepared by Thermal Dewetting of Percolated Evaporated Gold Films, Journal of Physical Chemistry C 115(50):24642-24652, (2011); [PDF].
  10. Chuntonov, L. & Haran, G. Effect of Symmetry Breaking on the Mode Structure of Trimeric Plasmonic Molecules, Journal of Physical Chemistry C 115(40):19488-19495, (2011); [PDF].
  11. Pirchi, M., Ziv, G., Riven, I., Sedghani Cohen, S., Zohar, N., Barak, Y. & Haran, G. Single-molecule fluorescence maps the folding landscape of a large protein, Nature communications 2:493, (2011); [PDF].
  12. Chuntonov, L. & Haran, G. Trimeric plasmonic molecules: the role of symmetry, Nano Lett 11, 2440-2445, (2011); [PDF].
  13. Lombardi J.R., Birke R.L. and Haran, G., Single Molecule SERS Spectral Blinking and Vibronic Coupling, Journal of Physical Chemistry C, 115, 4540-4545(2011); [PDF].
  14. England J. L. and Haran, G., Role of Solvation Effects in Protein Denaturation: From Thermodynamics to Single Molecules and Back, Annual Reviews of Physical Chemistry 62, 257-277 (2011); [PDF].
  15. Sherman E. and Haran, G., Fluorescence Correlation Spectroscopy of Fast Chain Dynamics within Denatured Protein L, ChemPhysChem 12(3),696-703 (2011); [PDF].
  16. England J. L. and Haran, G., To Fold or Expand—a Charged Question, Proceedings of the National Academy of Sciences of the United States of America 107(33),14519-14520 (2010); [PDF] .
  17. Haran, G., Targeting Non-Fluorescent Molecules by Nonlinear Optical Imaging, Chemical Physics Physical Chemistry 11(8),1619-1622 (2010); [PDF].
  18. Haran, G., Single-Molecule Raman Spectroscopy: A Probe of Surface Dynamics and Plasmonic Fields, Accounts of Chemical Research 43(8), 1135-1143 (2010); [PDF].
  19. Frank, G.A., Goomanovsky, M., Davidi, A., Ziv, G., Horovitz, A. and Haran, G., Out-of-equilibrium conformational cycling of GroEL under saturating ATP concentrations , Proceedings of the National Academy of Sciences of the United States of America 107(14), 6270-6274 (2010); [PDF].
  20. Shegai, T., Vaskevich, A., Rubinstein, I., and Haran, G., Raman Spectroelectrochemistry of Molecules within Individual Electromagnetic Hot Spots, Journal of the American Chemical Society 131(40), 14390–14398 (2009); [PDF].
  21. Dadosh, T., Sperling, J., Bryant, G. W., Breslow, R., Shegai, T., Dyshel, M., Haran, G. and Bar-Joseph, I., Plasmonic Control of the Shape of the Raman Spectrum of a Single Molecule in a Silver Nanoparticle Dimer, ACS Nano 3(7), 1988-1994 (2009); [PDF].
  22. Phillip, Y., Sherman, E., Haran, G. and Schreiber, G., Common Crowding Agents Have Only a Small Effect on Protein-Protein Interactions , Biophysical Journal 3, 875-885 (2009); [PDF].
  23. Li, Z. P., Shegai, T., Haran, G., and Xu, H. X., Multiple-Particle Nanoantennas for Enormous Enhancement and Polarization Control of Light Emission, ACS Nano 3 (3), 637-642 (2009); [PDF].
  24. Schreiber, G., Haran, G., and Zhou, H. X., Fundamental Aspects of Protein-Protein Association Kinetics, Chemical Reviews 109 (3), 839-860 (2009); [PDF].
  25. Ziv, G. and Haran, G., Protein Folding, Protein Collapse, and Tanford's Transfer Model: Lessons from Single-Molecule FRET, Journal of the American Chemical Society 131 (8), 2942-2947 (2009); [PDF].
  26. Ziv, G., Thirumalai, D., and Haran, G., Collapse transition in proteins, Physical Chemistry Chemical Physics 11 (1), 83-93 (2009); [PDF].
  27. Mor, A., Haran, G., and Levy, Y., Characterization of the unfolded state of repeat proteins, HFSP Journal 2 (6), 405–415 (2008); [PDF].
  28. Shegai, T., Li, Z. P., Dadosh, T., Zhang, Z. Y., Xu, H. X., and Haran, G., Managing light polarization via plasmon-molecule interactions within an asymmetric metal nanoparticle trimer, Proceedings of the National Academy of Sciences of the United States of America 105 (43), 16448-16453 (2008); [PDF].
  29. England, J. L., Pande, V. S., and Haran, G., Chemical denaturants inhibit the onset of dewetting, Journal of the American Chemical Society 130 (36), 11854-11855 (2008); [PDF].
  30. O'Brien, E. P., Ziv, G., Haran, G., Brooks, B. R., and Thirumalai, D., Effects of denaturants and osmolytes on proteins are accurately predicted by the molecular transfer model, Proceedings of the National Academy of Sciences of the United States of America 105 (36), 13403-13408 (2008); [PDF].
  31. Cortajarena, A. L., Lois, G., Sherman, E., O'Hern, C. S., Regan, L., and Haran, G., Nonrandom Coil Behavior as a Consequence of Extensive PPII Structure in the Denatured State, Journal of Molecular Biology, 382 (1), 203-212 (2008); [PDF].
  32. Papo, N., Kipnis, Y., Haran, G., and Horovitz, A., Concerted release of substrate domains from GroEL by ATP is demonstrated with FRET, Journal of Molecular Biology 380 (4), 717-725 (2008); [PDF].
  33. Paz, A., Zeev-Ben-Mordehai, T., Lundqvist, M., Sherman, E., Mylonas, E., Weiner, L., Haran, G., Svergun, D. I., Mulder, F. A., Sussman, J. L., and Silman, I., Biophysical characterization of the unstructured cytoplasmic domain of the human neuronal adhesion protein neuroligin 3, Biophysical Journal 95 (4), 1928-1944 (2008); [PDF].
  34. Sherman, E., Itkin, A., Kuttner, Y. Y., Rhoades, E., Amir, D., Haas, E., and Haran, G., Using fluorescence correlation spectroscopy to study conformational changes in denatured proteins, Biophysical Journal 94 (12), 4819-4827 (2008); [PDF].
  35. Frank, G. A., Kipnis, Y., Smolensky, E., Daube, S. S., Horovitz, A., and Haran, G., Design of an Optical Switch for Studying Conformational Dynamics in Individual Molecules of GroEL, Bioconjugate Chemistry 19: 1339-1341 (2008); [PDF].
  36. Schuler, B. and Haran, G, Protein folding and dynamics from single molecule spectroscopy, in Single molecules and Nanotechnology (eds. R. Rigler and H. Vogel), Springer Series in Biophysics, Springer, Heidelberg, vol. 12, pp.181-216.
  37. Kipnis, Y., Papo, N., Haran, G. & Horovitz, A. Concerted ATP-induced allosteric transitions in GroEL facilitate release of protein substrate domains in an all-or-none manner. Proceedings of the National Academy of Sciences of the United States of America 104, 3119-3124 (2007); [PDF].
  38. Kozer, N., Kuttner, Y. Y., Haran, G. & Schreiber, G. Protein-Protein Association in Polymer Solutions: from Dilute to Semidilute to Concentrated. Biophysical Journal 92, 2139-2149 (2007); [PDF].
  39. Sherman, E. & Haran, G. Coil-globule transition in the denatured state of a small protein. Proceedings of the National Academy of Sciences of the United States of America, 103, 11539-43 (2006); [PDF].
  40. Shegai, T. O. & Haran, G. Probing the Raman scattering tensors of individual molecules. Journal of Physical Chemistry B 110, 2459-2461 (2006); [PDF].
  41. Ziv, G., Haran, G. & Thirumalai, D. Ribosome exit tunnel can entropically stabilize α-helices. Proceedings of the National Academy of Sciences of the United States of America 102, 18956-18961 (2005); [PDF].
  42. Kuttner, Y.Y., Kozer N., Segal, E., Schreiber, G. & Haran, G. Separating the Contribution of Translational and Rotational Diffusion to Protein Association. Journal of the American Chemical Society 127, 15138-15144 (2005); [PDF]; [supporting material].
  43. Sharaabi, Y., Shegai, T. & Haran, G. Two-state analysis of single-molecule Raman spectra of crystal violet. Chemical Physics 318, 44-49 (2005); [PDF].
  44. Haran, G. & Vohringer, P. Optical Spectroscopy of Biomolecular Dynamics: Editorial. ChemPhysChem 5, 755-758; [PDF].
  45. Vohringer, P. & Haran, G. Conference Report: Optical spectroscopy of biomolecular dynamics. ChemPhysChem 5, 1311-1313 (2004); [PDF].
  46. Rhoades, E., Cohen, M., Schuler, B. & Haran, G. Two-state folding observed in individual protein molecules. Journal of the American Chemical Society 126, 14686-14687 (2004); [PDF].
  47. Tucker, W. C., Schwarz, A., Levine, T., Du, Z., Gromet-Elhanan, Z., Richter, M. L. & Haran, G. Observation of calcium-dependent unidirectional rotational motion in recombinant photosynthetic F1-ATPase molecules. Journal of Biological Chemistry 279, 47415-47418 (2004); [PDF].
  48. Haran, G. Noise reduction in single-molecule fluorescence trajectories of folding proteins. Chemical Physics 307, 137-145 (2004); [PDF].
  49. Haran, G. Single molecule Raman spectroscopy and local work function fluctuations. Israel Journal of Chemistry, 44, 385-390 (2004); [PDF].
  50. Lukatksy, A., Haran, G. & Safran, S. Slow fluctuations in enhanced Raman scattering and surface roughness relaxation. Physical Review E 67, Art. No. 062402 (2003); [PDF].
  51. Haran, G. Topical Review: Single-molecule fluorescence spectroscopy of biomolecular folding. Journal of Physics: Condensed Matter 15, R1291-R1317 (2003); [PDF].
  52. Rhoades, E., Gussakovsky, E. & Haran, G. Watching Proteins Fold One Molecule at a Time. Proceedings of the National Academy of Sciences of the United States of America 100, 3197-3202 (2003); [PDF].
  53. Weiss, A. & Haran, G. Time-Dependent Single-Molecule Raman Scattering as a Probe of Surface Dynamics. Journal of Physical Chemistry B 105, 12348-12354 (2001); [PDF].
  54. Boukobza, E., Sonnenfeld, A. & Haran, G. Immobilization in Surface-Tethered Lipid Vesicles as a New Tool for Single Biomolecule Spectroscopy. Journal of Physical Chemistry B 105, 12165-12170 (2001); [PDF]
  55. Wang, Y., Astilean, S., Haran, G. & Warshawsky, A. Microenvironmental Investigation of Polymer-Bound Fluorescent Chelator by Fluorescence Microscopy and Optical Spectroscopy. Analytical Chemistry 73, 4096-4103 (2001); [PDF].
  56. Gnanakaran, S., Haran, G., Kumble, R. & Hochstrasser, R. M. (1999) in Resonance Energy Transfer (eds. Demidov, A. & Andrews, D.) 308-365 (Wiley, London).
  57. Bopp, M. A., Jia, Y., Haran, G., Morlino, E. A. & Hochstrasser, R. M. Single-Molecule Spectroscopy with 27 fs Pulses: Time-Resolved Experiments and Direct Imaging of Oreintational Distributions. Applied Physics Letters 73, 7-9 (1998).
  58. Haran, G., Morlino, E. A., J., M., Callender, R. & Hochstrasser, R. M. Femtosecond Polarized Pump-Probe and stimulated Emission Spectroscopy of the Isomerization Reaction of Rhodopsin. Journal of Physical Chemistry A 103, 2202-2207 (1999).
  59. Haran, G., Sun, W.-D., Wynne, K. & Hochstrasser, R. M. Femtosecond Far-Infrared Spectroscopy: A New Tool for studying Low-frequency Vibrational Dynamics in Molecular Condensed Phases. Chemical Physics Letters 234, 365-371 (1997).
  60. Haran, G., Wynne, K., Xie, A., He, Q., Chance, M. & Hochstrasser, R. M. Excited State Dynamics of Bacteriorhodopsin Revealed by Transient Stimulated Emission Spectra. Chemical Physics Letters 261, 389-395 (1996).
  61. Haran, G., Wynne, K., Moser, C. C., Dutton, P. L. & Hochstrasser, R. M. Level Mixing and Energy Redistribution in Bacterial Photosynthetic Reaction Centers. Journal of Physical Chemistry 100, 5562-5569 (1996).
  62. Wynne, K., Haran, G., Reid, G. D., Moser, C. C., Dutton, P. L. & Hochstrasser, R. M. Femtosecond Infrared Spectroscopy of Low Lying Excited States in Reaction Centers of Rhodobacter Sphaeroides. Journal of Physical Chemistry 100, 5140-5148 (1996).
  63. Haran, G., Haas, E. & Rapaport, D. C. Molecular Dynamics of Simple Peptide Models: Solvent Effects and Comparison with Experiment. Journal of Physical Chemistry 98, 10294-10302 (1994).
  64. Haran, G., Cohen, R., Bar, L. K. & Barenholz, Y. Transmembrane Ammonium sulfate gradients in liposomes produce efficient and stable entrapment of amphipatic weak base. Biochimica et Biophysica Acta 1151, 201-215 (1993).
  65. Haran, G., Haas, E., Szpikowska, B. K. & Mas, M. T. Domain Motions in Phosphoglycerate Kinase: Determination of Inter-Domain Distance Distributions by Site-Specific Labeling and Time-Resolved Fluorescence Energy Transfer. Proceedings of the National Academy of Sciences of the United States of America 89, 11764-11768 (1992).

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