Program

SCG Program

September 9
Time	Session/Lecture info
13:00-17:10	Gene regulation
13:00-13:15	Opening Remarks
13:15-14:00	Sunney Xie, Harvard Life at the Single Molecule Level: Single Cell Genomics
14:00-14:30	Alexander van Oudenaarden, Utrecht Single-cell transcriptomics
14:30-14:50	Neeraj Salathia, Illumina High throughput single cell profiling to elucidate the transcriptome?s role in brain function
14:50-15:20	Coffee Break
15:20-15:50	Peter Fraser, Babraham Institute 3D structure of chromosomes and genome organization revealed by single cell Hi-C
15:50-16:10	Gavin Kelsey, Barbraham/Cambridge A Reproducible Method for Single-Cell Whole-Genome Bisulphite Sequencing for Analysis of Rare Cells and DNA Methylation Heterogeneity
16:10-16:40	Rickard Sandberg, KI Single-cell analyses of dynamic and fixed random monoallelic expression
16:40-17:10	Coffee Break
17:10-21:00	Neuroscience: deconstructing brain complexity
17:10-17:40	Kun Zhang, UCSD Single-nucleus sequencing of human adult brain
17:40-18:00	Bosiljka Tasic, Allen Brain Cellular taxonomy of mouse cortical area V1 by single cell RNA-seq
18:00-18:30	Peter Mombaerts & Luis Saraiva, Max Planck & Sanger Coding olfaction and single cell transcriptomics
18:30-19:00	Sten Linnarsson, Karolinska Modularity of the transcriptome revealed by single-cell RNA-seq of mouse cerebral cortex
19:00-21:00	Dinner

September 10
Time	Session/Lecture info
09:00-14:00	Single-cell cancer genomics
09:00-09:45	Michael Stratton, Sanger Cancer genomics
09:45-10:15	Dana Pe'er, Columbia Characterizing a phenotypic landscape of tumor heterogeneity
10:15-10:45	Michael Wigler, CSHL Single cell nucleic acid analysis: methods, algorithms and results
10:45-11:05	Coffee Break
11:05-11:35	Nicholas Navin, MD Anderson Single-cell dissection of tumors
11:35-11:55	Siddharth Dey, Hubrecht Integrated genome and transcriptome sequencing from the same cell
11:55-12:25	Amos Tanay, Weizmann Is there information in single cell epigenomes?
12:25-14:00	Lunch
14:00-19:00	Novel technology enabling the single cell revolution
14:00-14:30	David Weitz, Harvard Single-cell studies with drop-based microfluidics
14:30-15:00	Joakim Lundberg, SciLifeLab/KTH Transcriptome sequencing of single cells in a spatial tissue context
15:00-15:20	Mark Lynch, Fluidigm Exploring the dynamics of Biology One Cell at a Time
15:20-15:40	Coffee Break
15:40-16:10	Long Cai, Caltech Single cell in situ transcriptional profiling by sequential FISH
16:10-16:30	Evan Macosko, Broad DropSeq: A Droplet-Based Technology for Single-Cell mRNA-seq Analysis on a Massive Scale
16:30-17:00	Mats Nilsson, SciLifeLab/Stockholm U. In situ sequencing for RNA expression profiling in tissue sections
17:00-19:00	Poster Session

September 11
Time	Session/Lecture info
09:00-14:00	Development/stem cells
09:00-09:45	Michael Elowitz , Caltech Cell signaling at the single-cell level
09:45-10:15	Fuchou Tang, Beijing University Dissecting gene regulation network in human early embryos at single-cell and single-base resolution
10:15-10:45	Paul Robson, GSI Developmental dynamics
10:45-11:10	Coffee Break
11:10-11:40	Gouping Fan, UCLA Single-cell analyses of preimplantation embryos
11:40-12:10	John Marioni, EBI Cambridge Accounting for technical noise reveals novel structure between populations of cells
12:10-12:30	Barbara Treutlein, Stanford/Leipzig Reconstructing lineage hierarchies of the distal lung epithelium using singlecell RNAseq
12:30-14:00	Lunch
14:00-23:00	Immunology and development
14:00-14:30	Peter Lansdorp, Groningen/UBC Sequencing of DNA template strands from single cells has many applications
14:30-14:50	Peter Kharchenko, Harvard Analysis of heterogeneity in single-cell neural progenitor populations with pathway overdispersion
14:50-15:10	Jan Junker, Hubrecht Genome-wide RNA tomography in the zebrafish embryo
15:10-15:40	Tarjei Mikkelsen, Broad Characterization of directed differentiation by high-throughput single-cell RNA-seq
15:40-16:10	Coffee Break
16:10-16:40	Ido Amit, WIS Single cell RNA and chromatin dynamics during blood formation
16:40-17:10	Christophe Benoist, Harvard Single-cell immonology
17:10-18:00	George Church, Harvard Lecture
19:00-23:00	Dinner