TRACTS output: RY tracts of E. coli. (U00096):
Short sample of some longer tracts:
U00096 I - I - 100.0 12 4608613 4608624 R.Y TTTCCCTTCCTT
U00096 C c C c 100.0 12 4613067 4613078 R.Y AGGAGAAGGGGA
U00096 C c C c 100.0 13 4613632 4613644 R.Y TCCCTTCTTTTTC
U00096 C c I - 100.0 15 4614634 4614648 R.Y TCTTCTTTTCCTTTT
U00096 C x C 100.0 12 4621717 4621728 R.Y CTCTTTTTTCTC
U00096 C c C n 100.0 15 4621730 4621744 R.Y CTTTCTTCCTCTTCC
U00096 C w C w 100.0 12 4629327 4629338 R.Y GAAAGAGAAAGA
U00096 C w C w 100.0 14 4631657 4631670 R.Y GAAGAAGAAGAGAA
U00096 C w C w 100.0 12 4635014 4635025 R.Y GGAAGGGAAAAA
---------- SEQUENCES ---------- ---------- BASES ----------- ------- BASES GE. --------
LENGTH PYRS PURS SUM EXPCTD DIFF FOUND EXPECTD DIFF RATIO CUMULTV. FOUND EXPCTD RATIO
1 601215 6020181203233 ********* 43427.812032331159805.25 43427.75 1.04 1203233 46392214639221.00 1.00
2 350806 350931 701737 579902.62 121834.414034741159805.25243668.75 1.21 2606707 34359883479416.50 0.99
3 129188 128563 257751 289951.31 -32200.3 773253 869853.94-96600.94 0.89 3379960 20325142319611.25 0.88
4 60444 60337 120781 144975.69 -24194.7 483124 579902.75-96778.75 0.83 3863084 12592611449757.75 0.87
5 32092 31641 63733 72487.85 -8754.9 318665 362439.25-43774.25 0.88 4181749 776137 869854.69 0.89
6 15531 15417 30948 36243.94 -5295.9 185688 217463.62-31775.62 0.85 4367437 457472 507415.41 0.90
7 7929 8104 16033 18121.98 -2089.0 112231 126853.84-14622.84 0.88 4479668 271784 289951.78 0.94
8 4270 4503 8773 9060.99 -288.0 70184 72487.94 -2303.94 0.97 4549852 159553 163098.03 0.98
9 2094 2010 4104 4530.50 -426.5 36936 40774.49 -3838.49 0.91 4586788 89369 90610.05 0.99
10 1125 1148 2273 2265.25 7.7 22730 22652.51 77.49 1.00 4609518 52433 49835.56 1.05
11 592 613 1205 1132.63 72.4 13255 12458.89 796.11 1.06 4622773 29703 27183.06 1.09
12 307 286 593 566.31 26.7 7116 6795.76 320.24 1.05 4629889 16448 14724.17 1.12
13 138 145 283 283.16 -0.2 3679 3681.04 -2.04 1.00 4633568 9332 7928.41 1.18
14 79 93 172 141.58 30.4 2408 1982.10 425.90 1.21 4635976 5653 4247.37 1.33
15 41 44 85 70.79 14.2 1275 1061.84 213.16 1.20 4637251 3245 2265.26 1.43
16 21 31 52 35.39 16.6 832 566.32 265.68 1.47 4638083 1970 1203.42 1.64
17 18 11 29 17.70 11.3 493 300.86 192.14 1.64 4638576 1138 637.11 1.79
18 3 4 7 8.85 -1.8 126 159.28 -33.28 0.79 4638702 645 336.25 1.92
19 6 2 8 4.42 3.6 152 84.06 67.94 1.81 4638854 519 176.97 2.93
20 2 5 7 2.21 4.8 140 44.24 95.76 3.16 4638994 367 92.91 3.95
21 6 0 6 1.11 4.9 126 23.23 102.77 5.42 4639120 227 48.67 4.66
22 1 1 2 0.55 1.4 44 12.17 31.83 3.62 4639164 101 25.44 3.97
28 0 1 1 0.01 1.0 28 0.24 27.76 115.72 4639192 57 0.50 113.73
29 1 0 1 0.00 1.0 29 0.13 28.87 231.44 4639221 29 0.26 111.86
SUM 2411817 4639221 (:2 =********) DEVIATION: -3.98% %A,G = 0.500
Summary for RY sequences .GE.12 at level 100%
CODING INTERCODING INTRONS TOTAL BASES
TOTAL: 4133682 505539 0 4639221
FOUND: 11510 4938 0 16448
EXPECTED: 13119.67 1604.50 0.00 14724.17
RATIO: 0.88 3.08 0.00 1.12
---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ----------
1 AGCTTTTCAT TCTGACTGCA ACGGGCAATA TGTCTCTGTG TGGATTAAAA AAAGAGTGTC TGATAGCAGC TTCTGAACTG GTTACCTGCC GTGAGTAAAT 100
KKKK KKKWWWRRRR RRRRRR WWWWW