This viewer provides a comprehensive transcriptome map of the S. solfataricus P2.
The data includes transcription start sites (TSS), operon map, corrected gene annotation,
antisense transcripts, and non-coding RNAs (ncRNAs).
Wurtzel O., Sapra R., Chen F., Zhu Y., Simmons B.A., Sorek R.
A single-base resolution map of an archaeal transcriptome.
Genome Research, published online Nov 2 (2009). PMID:19884261
View primary transcriptome sites
Browser:
Firefox
is recommended, but
Google Chrome and
Apple Safari are supported too, please do not use Internet Explorer.
Download all plots for offline view
Instructions:
- Enter the desired position or leave it at 1 at the organism chooser, changing the position can be achieved from the viewer itself.
- In the viewer navigate with the mouse or the keyboard shortcuts (recommended).
- Hovering above the the reads shows a tooltip with accurate read coverage in a 100bps windows.
- The genes arrows are clickable, use ctrl+left mouse button to open NCBI's gene description.
Keyboard shortcuts:
- j - go back 2k
- k - go forward 2k
- u - go to start
- i - go to end
- e - view top plot
- d - view bottom plot
- / - jump to position box
- m - zoom on position