M2C2 webinar: #5 The IAMM project – Sher, Grossart, Segré, Voss labs

Date: Wednesday, June 2, 2021
Hour: 9:00 - 11:00 EST 15:00 - 17:00 CET 16:00 - 18:00 IL
Organizer lab The IAMM project – Sher, Grossart, Segré, Voss labs

Haifa Uni/IGB/BU/IOW

About the lab

Marine biogeochemistry, energy and greenhouse gas fluxes from the ocean are primarily controlled by microbes. Looking at marine communities in a holistic way, the IAMM team (Interactions Among Marine Microbes) aims to predict how marine microorganisms growing together interact and affect each other, based on the information encoded in their genomes. Our work is motivated by increasing evidence that interactions between marine microorganisms are key to understanding global biogeochemical cycles, weather and climate. Understanding the fate of these interactions is nevertheless extremely complicated due to the enormous diversity of microorganisms and the richness of their metabolism. We are working to tackle this challenge through a tightly integrated combination of genome analyses, genome-scale modeling, and laboratory experiments, to identify genomic traits dictating how environmentally-relevant microbes interact. In the M2C2 presentations, we will ask three questions: 1) How are traits related to microbial interactions partitioned across marine microbial diversity? 2) To what extent does the growth of marine microbes under lab conditions recapitulate their metabolic potential? 3) To what extent does the phenotype of microbial interactions vary between ecologically-divergent strains of two model marine microbes (Prochlorococcus and Alteromonas)?

Speakers

Overview of the IAMM project

Daniel Sher, PI

University of Haifa, Israel

Comparative whole-genome approach to identify bacterial traits for microbial interactions

Luca Zoccarato, Postdoc

IGB, Berlin, Germany

Marine microbial interactions across diversity and their biogeochemical consequences

Hans-Peter G, PI

IGB, Berlin, Germany

Metabolic phenotyping of marine heterotrophs on refactored media reveals diverse metabolic adaptations and lifestyle strategies

Elena Forchielli, PhD student

Boston University, USA

Predicting ecosystem-level metabolism and microbial interactions

Daniel Segré, PI

Boston University, USA

Phototroph-heterotroph interactions during growth and long-term starvation across Prochlorococcus and Alteromonas diversity

Osnat Weissberg, PhD student

University of Haifa, Israel

*Currently at sea*

Maren Voss, PI

IO Warnemunde, Germany