BIOINFORMATICS<-->STRUCTURE
Jerusalem, Israel, November 17-21, 1996

Abstract


Object-oriented data handler for sequence analysis software development

A.A. Ptitsyn and D.A. Grigorovich

Institute of Cytology and Genetics, Siberian Division of Russian Academy of Sciences, Lavrentjev Prospect 10, Novosibirsk 630090, Russia

ptitsyn@mailhost.bionet.nsk.su


We report an object-oriented data handler and supplementary tools for the development of molecular genetics application software for various sequence analyses. It has a flexible and expandable format that supports the most common data types for molecular genetic software. New data types can be constructed in an object-oriented manner from the basic units. The data handler includes an object library, a format-converting program and a viewer that can visualise at a time the data contained in several files to make a general picture from separate data. This software has been implemented on an IBM PC compatible personal computer.


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