Modeling and Simulation
Collaboration with Prof. David Harel of the Department of Applied Mathematics and Computer Science and with Dr. Sol Efroni (now of Bar-Ilan University) has led to the development of a visual language for computer simulation of living systems that is understandable to biologists - Reactive Animation. This work has given rise to GemCell - a generic platform for modeling cellular systems.
See the following papers in the list of publications: 385; 409; 433; 451; 470; 473; 482; 483; 489; 491; 498.
Complex Systems
Collaborations with the late Prof. Lee Segel, Prof. Henri Atlan, Prof. David Harel, Prof. Sorin Solomon, Prof. Yoram Louzoun, Prof. Eshel Ben Jacob and Dr. Sol Efroni have led to insights into computational systems biology and complex systems.
See the following papers in the list of publications: 199; 214; 215; 262; 298; 329; 353; 371; 372; 373; 379; 392; 402; 407; 455; 458; 462; 468; 476.
Complex Systems Book: I am currently writing a book on the evolution of complex biologic systems.