Network Motifs

Daniel Madar; Erez Dekel; Anat Bren; Uri Alon

Negative Auto-Regulation Increases the Input Dynamic-Range of the Arabinose System of Escherichia Coli

Bmc Systems Biology , 5:000025621 (2011) [PDF] [SOM]
Bren A. & Alon U.

Architecture and Dynamics of Transcriptional Networks

, (2011) [PDF]
Oren Shoval; Uri Alon

Snapshot: Network Motifs

Cell , 143:000036278 (2010)
Ofer Rahat; Uri Alon; Yaakov Levy; Gideon Schreiber

Understanding Hydrogen-Bond Patterns in Proteins Using Network Motifs

Bioinformatics , 25:000031370 (2009)
Shai Kaplan; Anat Bren; Alon Zaslaver; Erez Dekel; Uri Alon

Diverse Two-Dimensional Input Functions Control Bacterial Sugar Genes

Molecular Cell , 29:000020614 (2008) [PDF]
Shai Kaplan; Anat Bren; Erez Dekel; Uri Alon

The Incoherent Feed-Forward Loop Can Generate Non-Monotonic Input Functions For Genes

Molecular Systems Biology , 4:000020613 (2008) [PDF]
Uri Alon

Network Motifs: theory and Experimental Approaches

Nature Reviews Genetics , 8:000002655 (2007) [PDF]
Nitzan Rosenfeld; Jonathan W. Young; Uri Alon; Peter S. Swain; Michael B. Elowitz

Accurate Prediction of Gene Feedback Circuit Behavior From Component Properties

Molecular Systems Biology , 3:000032806 (2007)
S Mangan; Shalev Itzkovitz; A Zaslaver; Uri Alon

The Incoherent Feed-Forward Loop Accelerates the Response-Time of the Gal System of Escherichia Coli

Journal of Molecular Biology , 356:000025952 (2006) [PDF]
Shalev Itzkovitz; Ron Milo; Nadav Kashtan; Reuven Levitt; Amir Lahav; Uri Alon

Recurring Harmonic Walks and Network Motifs in Western Music

Advances in Complex Systems , 9:000019710 (2006) [PDF]
Ziv Frankenstein; Uri Alon; Irun R. Cohen

The Immune-Body Cytokine Network Defines a Social Architecture of Cell Interactions

Biology Direct , 1:000013718 (2006) [PDF]
Shalev Itzkovitz; Uri Alon

Subgraphs and Network Motifs in Geometric Networks

Physical Review E , 71:000019705 (2005) [PDF]
Shalev Itzkovitz; R Levitt; N Kashtan; Ron Milo; M Itzkovitz; Uri Alon

Coarse-Graining and Self-Dissimilarity of Complex Networks

Physical Review E , 71:000019709 (2005) [PDF]
Shiraz Kalir; Shmoolik Mangan; Uri Alon

A Coherent Feed-Forward Loop With a Sum Input Function Prolongs Flagella Expression in Escherichia Coli

Molecular Systems Biology , 1:000020395 (2005) [PDF]
Ron Milo; Shalev Itzkovitz; N Kashtan; R Levitt; Uri Alon

Response to Comment on &Quot;Network Motifs: Simple Building Blocks of Complex Networks&Quot; and &Quot;Superfamilies of Evolved and Designed Networks&Quot;

Science , 305:000027274 (2004)
N Kashtan; Shalev Itzkovitz; Ron Milo; Uri Alon

Efficient Sampling Algorithm For Estimating Subgraph Concentrations and Detecting Network Motifs

Bioinformatics , 20:000020857 (2004) [PDF]
Shalev Itzkovitz; Ron Milo; N Kashtan; MEJ Newman; Uri Alon

Reply to &Quot;Comment on 'Subgraphs in Random Networks' &Quot;

Physical Review E , 70:000019711 (2004)
N Kashtan; Shalev Itzkovitz; Ron Milo; Uri Alon

Topological Generalizations of Network Motifs

Physical Review E , 70:000020858 (2004) [PDF]
Yeger-Lotem, E; Sattath, S; Kashtan, N; Itzkovitz, S; Milo, R; Pinter, RY; Alon, U; Margalit, H

Network Motifs in Integrated Cellular Networks of Transcription-Regulation and Protein-Protein Interaction

Proceedings of the National Academy of Sciences of the United States of America , (2004)
Ron Milo; Shalev Itzkovitz; N Kashtan; R Levitt; S Shen-Orr; I Ayzenshtat; Michal Sheffer; Uri Alon

Superfamilies of Evolved and Designed Networks

Science , 303:000027275 (2004) [PDF]
Itzkovitz S, Milo R, Kashtan N, Ziv G, Alon U.

Subgraphs in Random Networks.

Phys Rev e Stat Nonlin Soft Matter Phys , (2003) [PDF]
S Mangan; Uri Alon

Structure and Function of the Feed-Forward Loop Network Motif

Proceedings of the National Academy of Sciences of the United States of America , 100:000025951 (2003) [PDF]
S Mangan; A Zaslaver; Uri Alon

The Coherent Feedforward Loop Serves as a Sign-Sensitive Delay Element in Transcription Networks

Journal of Molecular Biology , 334:000025953 (2003)
Shen-Orr, SS; Milo, R; Mangan, S; Alon, U

Network Motifs in the Transcriptional Regulation Network of Escherichia Coli

Nature Genetics , (2002)
SS Shen-Orr; Ron Milo; S Mangan; Uri Alon

Network Motifs in the Transcriptional Regulation Network of Escherichia Coli

Nature Genetics , 31:000035830 (2002) [PDF]