| 8:45 |
Opening remarks - Marvin (Meir) Edelman & Ilan Samish |
| Docking and Assemblies (Chair - David Gilbert), 9:00 –
10:15 |
| 9:00 |
Rob Russell (invited presentation): A Structural Perspective on Protein
Interactions & Complexes. (Invited-1) |
| 9:30 |
Maxim Tortov: Protein-Protein Docking Simulations with Local Backbone
Flexibility. (36) |
| 9:45 |
Q. Jane Su, Orit Foord, Scott Klakamp, Holly Tao, Larry L. Green:
Modeling and Simulation of Antibody-Antigen Interaction: An Integrated Approach.
(72) |
| 10:00 |
Yuval Inbar, Haim J. Wolfson, Ruth Nussinov: Prediction of Multi-Molecular
Assemblies by Multiple Combinatorial Docking. (76) |
|
10:15 |
Coffee Break |
|
Structure Prediction (Chair -
Ilan Samish), 10:45 –
Noon |
| 10:45 |
Ron Unger (invited presentation): Using Accumulated Dot Matrices to Detect
RNA and Protein Structures. (Invited-2) |
| 11:15 |
Andreas Heger & Liisa Holm: Fast Fold Recognition by Consensus
Alignment within Transitive Closure. (18) |
| 11:30 |
Johannes Soeding & Andrei N. Lupas: Homology Search By HMM-HMM Comparison
Detects More Than Three Times As Many Remote Homologs as PSI-BLAST or HMMER.
(41) |
| 11:45 |
Jaspreet S. Sodhi, Kevin Bryson, Liam J. McGuffin, Jonathan
J. Ward, Lornenz Wernisch, David T. Jones: Predicting the Location and Identity
of Protein Functional Sites, Application to Genomic Fold Recognition. (53) |
|
12:00 |
Lunch +  Laptop Session |
|
15:00 |
Discussion session - Challenges in Docking and Structure Prediction. Chair - David T.
Jones |
| Structure Analysis (Chair - Kim Henrick), 16:00
-
16:30 |
| 16:00 |
Eran Eyal, Marvin Edelman, Vladimir Sobolev: The Influence of Crystal
Packing on Protein Structure. (15) |
| 16:15 |
Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy, Bogdan S. Melnik, Michail Y.
Lobanov, Alexei V. Finkelstein: Comparison of X-ray and NMR Protein Structures.
(22) |
|
16:30 |
Coffee Break |
|
Structure Analysis II (Chair - Vladimr Sobolev),
17:00 - 18:00 |
| 17:00 |
Maxim Chapovalov & Roland L. Dunbrack: Using Statistical Analysis of
Electron Density to Evaluate Protein Side-Chain Conformations and Rotamer
Disorder. (31) |
| 17:15 |
Inge Jonassen & William R. Taylor: A Method for Evaluating Structural
Models using Structural Patterns. (47) |
| 17:30 |
Gregorio Fernandez, Christine Kiel, Luis Serrano (invited presentation):
In silico Prediction of Protein-Protein Interactions: How and When It Can Work.
(Invited-3) |
|
18:00 |
Break |
|
19:00 |
Get-together Dinner at Moat House Hotel. Vegeterian and Kosher food is available. Please send requests
to:
3dsig@weizmann.ac.il |
|
20:30 |
Round Table session - The Role of Structural Bioinformatics in
Computational Biology. John Moult (chair); Panel members - Geoffrey (Geoff) Barton, Douglas (Doug)
Brutlag, Arne
Elofsson, John Norvell, Janet Thornton. |
| 22:00 |
Lights out... |
| Top |
Day 2 |