Publications

2017

  • 31.
    Erez Mills; Roi Avraham (2017). Breaking the Population Barrier by Single Cell Analysis: One Host Against One Pathogen.  Current Opinion in Microbiology. 36:(8)69-75.  Abstract
  • 30.
    Ak Barczak; Roi Avraham; Ss Luo; Wr Zhang; Ma Bray; Ae Hinman; M Thompson; Rm Nietupski; A Golas; P Montgomery; M Fitzgerald; Rs Smith; Dw White; Ad Tischler; Ae Carpenter; Dt Hung; Saurabh Singh (2017). Systematic, Multiparametric Analysis of Mycobacterium Tuberculosis Intracellular Infection Offers Insight Into Coordinated Virulence.  Plos Pathog. 13:(5)
  • 29.
    Leore T. Geller; Michal Barzily-Rokni; Tal Danino; Oliver H. Jonas; Noam Shental; Deborah Nejman; Nancy Gavert; Yaara Zwang; Zachary A. Cooper; Kevin Shee; Christoph A. Thaiss; Alexandre Reuben; Jonathan Livny; Roi Avraham; Dennie T. Frederick; Matteo Ligorio; Kelly Chatman; Stephen E. Johnston; Carrie M. Mosher; Alexander Brandis; Garold Fuks; Candice Gurbatri; Vancheswaran Gopalakrishnan; Michael Kim; Mark W. Hurd; Matthew Katz; Jason Fleming; Anirban Maitra; David A. Smith; Matt Skalak; Jeffrey Bu; Monia Michaud; Sunia A. Trauger; Iris Barshack; Talia Golan; Judith Sandbank; Keith T. Flaherty; Anna Mandinova; Wendy S. Garrett; Sarah P. Thayer; Cristina R. Ferrone; Curtis Huttenhower; Sangeeta N. Bhatia; Dirk Gevers; Jennifer A. Wargo; Todd R. Golub; Ravid Straussman (2017). Potential Role of Intratumor Bacteria in Mediating Tumor Resistance to the Chemotherapeutic Drug Gemcitabine.  Science. 357:(6356)1156-1160.  Abstract
  • 28.
    Avital G, Avraham R, Fan A, Hashimshony T, Hung Dt, Yanai I. (2017). Scdual-Seq: Mapping the Gene Regulatory Program of Salmonella Infection by Host and Pathogen Single-Cell RNA-Sequencing.  Genome Biology. 18(1).
  • 27.
    Hen-Avivi S, Avraham R (2017). Immune Cell Type 'Fingerprints' at the Basis of Outcome Diversity of Human Infection.  Curr Opin Microbiol. 42.
  • 26.
    Gal Avital; Roi Avraham; Amy Fan; Tamar Hashimshony; Deborah T. Hung; Itai Yanai (2017). Scdual-Seq: Mapping the Gene Regulatory Program of Salmonella Infection by Host and Pathogen Single-Cell RNA-Sequencing: Mapping the Gene Regulatory Program of Salmonella Infection by Host and Pathogen Single-Cell RNA-Sequencing.  Genome Biology. 18.  Abstract

2016

  • 25.
    Roi Avraham; Nathan Haseley; Amy Fan; Zohar Bloom-Ackermann; Jonathan Livny; Deborah T Hung (2016). A Highly Multiplexed and Sensitive RNA-Seq Protocol For Simultaneous Analysis of Host and Pathogen Transcriptomes.  Nature Protocols. 11:(8)1477-91.  Abstract
  • 24.
    Roi Avraham; Deborah T Hung (2016). A Perspective on Single Cell Behavior During Infection.  Gut Microbes. Pre print.

2015

  • 23.
    Roi Avraham; Nathan Haseley; Douglas Brown; Cristina Penaranda; Humberto B. Jijon; John J. Trombetta; Rahul Satija; Alex K. Shalek; Ramnik J. Xavier; Aviv Regev; Deborah T. Hung (2015). Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses.  Cell. 162:(6)1309-1321.  Abstract

2012

  • 22.
    Roi Avraham; Yosef Yarden (2012). Regulation of Signalling by Micrornas.  Biochemical Society Transactions. 40:26-30.  Abstract
  • 21.
    Aldema Sas-Chen; Roi Avraham; Yosef Yarden (2012). A Crossroad of Micrornas and Immediate Early Genes (Iegs) Encoding Oncogenic Transcription Factors in Breast Cancer.  Journal of Mammary Gland Biology and Neoplasia. 17:(1)3-14.  Abstract
  • 20.
    Itamar Harel; Yoshiro Maezawa; Roi Avraham; Ariel Rinon; Hsiao-Yen Ma; Joe W. Cross; Noam Leviatan; Julius Hegesh; Achira Roy; Jasmine Jacob-Hirsch; Gideon Rechavi; Jaime Carvajal; Shubha Tole; Chrissa Kioussi; Susan Quaggin; Eldad Tzahor (2012). Pharyngeal Mesoderm Regulatory Network Controls Cardiac and Head Muscle Morphogenesis.  Proceedings of the National Academy of Sciences of the United States of America. 109:(46)18839-18844.  Abstract
  • 19.
    Liron Zehavi; Roi Avraham; Aviv Barzilai; Dalia Bar-Ilan; Roy Navon; Yechezkel Sidi; Dror Avni; Raya Leibowitz-Amit (2012). Silencing of a Large Microrna Cluster on Human Chromosome 14q32 in Melanoma: Biological Effects of Mir-376a and Mir-376c on Insulin Growth Factor 1 Receptor.  Molecular Cancer. 11.  Abstract
  • 18.
    Ben-Moshe, Nb; Avraham, R; Kedmi, M; Zeisel, A; Yitzhaky, A; Yarden, Y; Domany, E (2012). Context-Specific Microrna Analysis: Identification of Functional Micrornas and Their Mrna Targets.  Nucleic Acids Research. 40:10614-10627.  Abstract
  • 17.
    Francesca Biagioni; Noa Bossel Ben-Moshe; Giulia Fontemaggi; Valeria Canu; Federica Mori; Barbara Antoniani; Benedetto, Anna Di Benedetto; Raffaela Santoro; Sabrina Germoni; Angelis, Fernanda De Angelis; Anna Cambria; Roi Avraham; Giuseppe Grasso; Sabrina Strano; Paola Muti; Marcella Mottolese; Yosef Yarden; Eytan Domany; Giovanni Blandino (2012). Mir-10b*, a Master Inhibitor of the Cell Cycle, is Down-Regulated in Human Breast Tumours.  Embo Molecular Medicine. 4:(11)1214-1229.  Abstract
  • 16.
    Gabi Tarcic; Roi Avraham; Gur Pines; Ido Amit; Tal Shay; Yiling Lu; Yaara Zwang; Menachem Katz; Chetrit, Nir Ben Chetrit; Jasmine Jacob-Hirsch; Laura Virgilio; Gideon Rechavi; George Mavrothalassitis; Gordon B. Mills; Eytan Domany; Yosef Yarden (2012). Egr1 and the Erk-Erf Axis Drive Mammary Cell Migration in Response to Egf.  Faseb Journal. 26:(4)1582-1592.  Abstract
  • 15.
    Noa Bossel Ben-Moshe; Roi Avraham; Merav Kedmi; Amit Zeisel; Assif Yitzhaky; Yosef Yarden; Eytan Domany (2012). Context-Specific Microrna Analysis: Identification of Functional Micrornas and Their Mrna Targets.  Nucleic Acids Research. 40:(21)10614-10627.  Abstract

2011

  • 14.
    Roi Avraham; Yosef Yarden (2011). Feedback Regulation of EGFR Signalling: Decision Making by Early and Delayed Loops.  Nature Reviews Molecular Cell Biology. 12:(2)104-117.  Abstract
  • 13.
    Yaara Zwang; Aldema Sas-Chen; Yotam Drier; Tal Shay; Roi Avraham; Mattia Lauriola; Efrat Shema-Yaacoby; Nili, Efrat Lidor Nili; Jasmine Jacob-Hirsch; Ninette Amariglio; Yiling Lu; Gordon B. Mills; Gideon Rechavi; Moshe Oren; Eytan Domany; Yosef Yarden (2011). Two Phases of Mitogenic Signaling Unveil Roles For P53 and Egr1 in Elimination of Inconsistent Growth Signals.  Molecular Cell. 42:(4)524-535.  Abstract
  • 12.
    Shelly Inbar; Elad Neeman; Roi Avraham; Marganit Benish; Ella Rosenne; Shamgar Ben-Eliyahu (2011). Do Stress Responses Promote Leukemia Progression? an Animal Study Suggesting a Role For Epinephrine and Prostaglandin-e-2 Through Reduced nk Activity.  PLoS ONE. 6:(4)  Abstract

2010

  • 11.
    Ariella Glasner; Roi Avraham; Ella Rosenne; Marganit Benish; Oded Zmora; Shaily Shemer; Hadas Meiboom; Shamgar Ben-Eliyahu (2010). Improving Survival Rates in Two Models of Spontaneous Postoperative Metastasis in Mice by Combined Administration of a Beta-Adrenergic Antagonist and a Cyclooxygenase-2 Inhibitor.  Journal of Immunology. 184:(5)2449-2457.  Abstract
  • 10.
    Roi Avraham; Aldema Sas-Chen; Ohad Manor; Israel Steinfeld; Reut Shalgi; Gabi Tarcic; Noa Bossel; Amit Zeisel; Ido Amit; Yaara Zwang; Espen Enerly; Hege G. Russnes; Francesca Biagioni; Marcella Mottolese; Sabrina Strano; Giovanni Blandino; Anne-Lise Borresen-Dale; Yitzhak Pilpel; Zohar Yakhini (2010). Egf Decreases the Abundance of Micrornas That Restrain Oncogenic Transcription Factors.  Science Signaling. 3:(124)  Abstract
  • 9.
    Roi Avraham; Marganit Benish; Shelly Inbar; Inbal Bartal; Ella Rosenne; Shamgar Ben-Eliyahu (2010). Synergism Between Immunostimulation and Prevention of Surgery-Induced Immune Suppression: an Approach to Reduce Post-Operative Tumor Progression.  Brain Behavior and Immunity. 24:(6)952-958.  Abstract

2008

  • 8.
    Marganit Benish; Inbal Bartal; Yael Goldfarb; Ben Levi; Roi Avraham; Amiram Raz; Shamgar Ben-Eliyahu (2008). Perioperative Use of Beta-Blockers and Cox-2 Inhibitors May Improve Immune Competence and Reduce the Risk of Tumor Metastasis.  Annals of Surgical Oncology. 15:(7)2042-2052.  Abstract
  • 7.
    Yossi Schwartz; Roi Avraham; Marganit Benish; Ella Rosenne; Shamgar Ben-Eliyahu (2008). Prophylactic IL-12 Treatment Reduces Postoperative Metastasis: Mediation by Increased Numbers But Not Cytotoxicity of nk Cells.  Breast Cancer Research and Treatment. 107:(2)211-223.  Abstract
  • 6.
    Shir Atzil; Michal Arad; Ariella Glasner; Noa Abiri; Roi Avraham; Keren Greenfeld; Ella Rosenne; Benzion Beilin; Shamgar Ben-Eliyahu (2008). Blood Transfusion Promotes Cancer Progression: a Critical Role For Aged Erythrocytes.  Anesthesiology. 109:(6)989-997.  Abstract

2007

  • 5.
    Keren Greenfeld; Roi Avraham; Marganit Benish; Yael Goldfarb; Ella Rosenne; Yoram Shapira; Tzvia Rudich; Shamgar Ben-Eliyahu (2007). Immune Suppression While Awaiting Surgery and Following it: Dissociations Between Plasma Cytokine Levels, Their Induced Production, and nk Cell Cytotoxicity.  Brain Behavior and Immunity. 21:(4)503-513.  Abstract
  • 4.
    Roi Avraham; Shamgar Ben-Eliyahu (2007). Neuroendocrine Regulation of Cancer Progression: II. Immunological Mechanisms, Clinical Relevance, and Prophylactic Measures.  Psychoneuroimmunology, Vols i and II, 4th Edition. 251-265.  Abstract
  • 3.
    Menachem Katz; Ido Amit; Ami Citri; Tal Shay; Silvia Carvalho; Sara Lavi; Fernanda Milanezi; Ljuba Lyass; Ninette Amariglio; Jasmine Jacob-Hirsch; Chetrit, Nir Ben Chetrit; Gabi Tarcic; Moshit Lindzen; Roi Avraham; Yi-Chun Liao; Patricia Trusk; Asya Lyass; Gideon Rechavi; Neil L. Spector (2007). A Reciprocal Tensin-3-Cten Switch Mediates Egf-Driven Mammary Cell Migration.  Nature Cell Biology. 9:(8)961-U124.  Abstract

2006

  • 2.
    Roi Avraham; Shelly Inbar; Ella Rosenne; Shamgar Ben-Eliyahu (2006). Autologous Control of a Highly Malignant Syngeneic Crnk-16 Leukemia in the Rat: a Role For nk Cells.  Cancer Immunology Immunotherapy. 55:(11)1348-1357.  Abstract
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