1. Anbalagan S., Blechman J., Gliksberg M., Gordon L., Rotkopf R., Dadosh T., Shimoni E. & Levkowitz G. (2019). Robo2 regulates synaptic oxytocin content by affecting actin dynamics.  eLife. 8.  Abstract
  2. Charuvi D., Nevo R., Aviv-Sharon E., Gal A., Kiss V., Shimoni E., Farrant J. M., Kirchhoff H. & Reich Z. (2019). Chloroplast breakdown during dehydration of a homoiochlorophyllous resurrection plant proceeds via senescence-like processes.  Environmental and Experimental Botany. 157:100-111.  Abstract


  1. Khalifa G. M., Kahil K., Erez J., Ashiri I. K., Shimoni E., Pinkas I., Addadi L. & Weiner S. (2018). Characterization of unusual MgCa particles involved in the formation of foraminifera shells using a novel quantitative cryo SEM/EDS protocol.  Acta Biomaterialia. 77:342-351.  Abstract
  2. Cohen E., Weissman H., Pinkas I., Shimoni E., Rehak P., Kral P. & Rybtchinski B. (2018). Controlled Self-Assembly of Photofunctional Supramolecular Nanotubes.  ACS Nano. 12:(1)317-326.  Abstract
  3. Wolf S. G., Shimoni E., Elbaum M. & Houben L. (2018). STEM Tomography in Biology.  Cellular Imaging: Electron Tomography and Related Techniques. 33-60.


  1. Milrot E., Shimoni E., Dadosh T., Rechav K., Unger T., Van Etten E. J. L. & Minsky A. (2017). Structural studies demonstrating a bacteriophage-like replication cycle of the eukaryote-infecting Paramecium bursaria chlorella virus-1.  PLoS Pathogens. 13:(8)  Abstract
  2. Nagar E., Zilberman S., Sendersky E., Simkovsky R., Shimoni E., Gershtein D., Herzberg M., Golden S. S. & Schwarz R. (2017). Type 4 pili are dispensable for biofilm development in the cyanobacterium Synechococcus elongatus.  Environmental Microbiology. 19:(7)2862-2872.  Abstract
  3. Herbst R. H., Bar-Zvi D., Reikhav S., Soifer I., Breker M., Jona G., Shimoni E., Schuldiner M., Levy A. A. & Barkai N. (2017). Heterosis as a consequence of regulatory incompatibility.  BMC Biology. 15.  Abstract
  4. Cohen E., Weissman H., Shimoni E., Kaplan-Ashiri I., Werle K., Wohlleben W. & Rybtchinski B. (2017). Robust Aqua Material: A Pressure-Resistant Self-Assembled Membrane for Water Purification.  ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 56:(8)2203-2207.  Abstract


  1. Addadi L., Varsano N., Kapishnikov S., Pereiro E., Shimoni E., Dadosh T., Jin X., Kruth H. & Leiserowitz L. (2016). Development of Correlative Cryo-soft X-ray Tomography and Stochastic Reconstruction Microscopy. A Study of Cholesterol Crystal Early Formation in Cells.  Journal of the American Chemical Society. 138:(45)14931-14940.  Abstract
  2. Charuvi D., Nevo R., Kaplan-Ashiri I., Shimoni E. & Reich Z. (2016). Studying the Supramolecular Organization of Photosynthetic Membranes within Freeze-fractured Leaf Tissues by Cryo-scanning Electron Microscopy.  Jove-Journal Of Visualized Experiments. (112)  Abstract
  3. Kerschnitzki M., Akiva A., Ben Shoham S. A., Koifman N., Shimoni E., Rechav K., Arraf A. A., Schultheiss T. M., Talmon Y., Zelzer E., Weiner S. & Addadi L. (2016). Transport of membrane-bound mineral particles in blood vessels during chicken embryonic bone development.  Bone. 83:65-72.  Abstract
  4. Milrot E., Mutsafi Y., Fridmann Sirkis S. Y., Shimoni E., Rechav K., Gurnon J. R., Van Etten E. J. L. & Minsky A. (2016). Virus-Host Interactions: Insights From The Replication Cycle Of The Large Paramecium Bursaria Chlorella Virus.  Cellular Microbiology. 18:(1)3-16.  Abstract


  1. Dhanyasi N., Segal D., Shimoni E., Shinder V., Shilo B., VijayRaghavan K. & Schejter E. D. (2015). Surface apposition and multiple cell contacts promote myoblast fusion in Drosophila flight muscles.  The Journal of Cell Biology. 211:(1)191-203.  Abstract
  2. Elbaz-Alon Y., Eisenberg-Bord M., Shinder V., Stiller S., Shimoni E., Wiedemann N., Geiger T. & Schuldiner M. (2015). Lam6 Regulates the Extent of Contacts between Organelles.  Cell Reports. 12:(1)7-14.  Abstract
  3. Tsarfati Y., Strauss V., Kuhri S., Krieg E., Weissman H., Shimoni E., Baram J., Guldi D. & Rybtchinski B. (2015). Dispersing Perylene Diimide/SWCNT Hybrids: Structural Insights at the Molecular Level and Fabricating Advanced Materials.  Journal of the American Chemical Society. 137:(23)7429-7440.  Abstract
  4. Dover R. S., Bitler A., Shimoni E., Trieu-Cuot P. & Shai Y. (2015). Multiparametric AFM reveals turgor-responsive net-like peptidoglycan architecture in live streptococci.  Nature Communications. 6.  Abstract
  5. Charuvi D., Nevo R., Shimoni E., Naveh L., Zia A., Adam Z., Farrant J. M., Kirchhoff H. & Reich Z. (2015). Photoprotection Conferred by Changes in Photosynthetic Protein Levels and Organization during Dehydration of a Homoiochlorophyllous Resurrection Plant.  Plant Physiology. 167:(4)1554-1565.  Abstract


  1. Dhanyasi N., Shimoni E., Shinder V., Vijayraghavan K., Shilo B. & Schejter E. (2014). Tight apposition and multiple cell-cell contacts mediate myoblast fusion in Drosophila.  Molecular Biology of the Cell. 25.  Abstract
  2. Krieg E., Weissman H., Shimoni E., On (Ustinoy) (. A. B. & Rybtchinski B. (2014). Understanding the Effect of Fluorocarbons in Aqueous Supramolecular Polymerization: Ultrastrong Noncovalent Binding and Cooperativity.  Journal of the American Chemical Society. 136:(26)9443-9452.  Abstract
  3. Davidi L., Shimoni E., Khozin-Goldberg I., Zamir A. & Pick U. (2014). Origin of beta-Carotene-Rich Plastoglobuli in Dunaliella bardawil1.  Plant Physiology. 164:(4)2139-2156.  Abstract
  4. Vidavsky N., Addadi S., Mahamid J., Shimoni E., Ben-Ezra D., Shpigel M., Weiner S. & Addadi L. (2014). Initial stages of calcium uptake and mineral deposition in sea urchin embryos.  Proceedings of the National Academy of Sciences of the United States of America. 111:(1)39-44.  Abstract


  1. Kapishnikov S., Weiner A., Shimoni E., Schneider G., Elbaum M. & Leiserowitz L. (2013). Digestive Vacuole Membrane in Plasmodium falciparum-Infected Erythrocytes: Relevance to Templated Nucleation of Hemozoin.  Langmuir. 29:(47)14595-14602.  Abstract
  2. Shechter N., Zaltzman L., Weiner A., Brumfeld V., Shimoni E., Fridmann Sirkis S. Y. & Minsky A. (2013). Stress-induced Condensation of Bacterial Genomes Results in Re-pairing of Sister Chromosomes IMPLICATIONS FOR DOUBLE STRAND DNA BREAK REPAIR.  Journal of Biological Chemistry. 288:(35)25659-25667.  Abstract
  3. Sorkin R., Kampf N., Dror Y., Shimoni E. & Klein J. (2013). Origins of extreme boundary lubrication by phosphatidylcholine liposomes.  Biomaterials. 34:(22)5465-5475.  Abstract
  4. Schatz D., Nagar E., Sendersky E., Parnasa R., Zilberman S., Carmeli S., Mastai Y., Shimoni E., Klein E., Yeger O., Reich Z. & Schwarz R. (2013). Self-suppression of biofilm formation in the cyanobacterium Synechococcus elongatus.  Environmental Microbiology. 15:(6)1786-1794.  Abstract
  5. Krieg E., Albeck S., Weissman H., Shimoni E. & Rybtchinski B. (2013). Separation, Immobilization, and Biocatalytic Utilization of Proteins by a Supramolecular Membrane.  PLoS One. 8:(5)  Abstract
  6. Mutsafi Y., Shimoni E., Shimon A. & Minsky A. (2013). Membrane Assembly during the Infection Cycle of the Giant Mimivirus.  PLoS Pathogens. 9:(5)  Abstract
  7. Weiner A., Kapishnikov S., Shimoni E., Cordes S., Guttmann P., Schneider G. & Elbaum M. (2013). Vitrification of thick samples for soft X-ray cryo-tomography by high pressure freezing.  Journal of Structural Biology. 181:(1)77-81.  Abstract


  1. Peled E., Pick U., Zarka A., Shimoni E., Leu S. & Boussiba S. (2012). LIGHT-INDUCED OIL GLOBULE MIGRATION IN HAEMATOCOCCUS PLUVIALIS (CHLOROPHYCEAE).  Journal of Phycology. 48:(5)1209-1219.  Abstract
  2. Saar Dover D. R., Bitler A., Nezer R., Shmuel-Galia L., Firon A., Shimoni E., Trieu-Cuot P. & Shai Y. (2012). D-Alanylation of Lipoteichoic Acids Confers Resistance to Cationic Peptides in Group B Streptococcus by Increasing the Cell Wall Density.  PLoS Pathogens. 8:(9)  Abstract
  3. Kapishnikov S., Weiner A., Shimoni E., Guttmann P., Schneider G., Dahan-Pasternak N., Dzikowski R., Leiserowitz L. & Elbaum M. (2012). Oriented nucleation of hemozoin at the digestive vacuole membrane in Plasmodium falciparum.  Proceedings of the National Academy of Sciences of the United States of America. 109:(28)11188-11193.  Abstract
  4. Charuvi D., Kiss V., Nevo R., Shimoni E., Adam Z. & Reich Z. (2012). Gain and Loss of Photosynthetic Membranes during Plastid Differentiation in the Shoot Apex of Arabidopsis.  Plant Cell. 24:(3)1143-1157.  Abstract
  5. Goclaw-Binder H., Sendersky E., Shimoni E., Kiss V., Reich Z., Perelman A. & Schwarz R. (2012). Nutrient-associated elongation and asymmetric division of the cyanobacterium Synechococcus PCC 7942.  Environmental Microbiology. 14:(3)680-690.  Abstract


  1. Kirchhoff H., Hall C., Wood M., Herbstova M., Tsabari O., Nevo R., Charuvi D., Shimoni E. & Reich Z. (2011). Dynamic control of protein diffusion within the granal thylakoid lumen.  Proceedings of the National Academy of Sciences of the United States of America. 108:(50)20248-20253.  Abstract
  2. Weiner A., Dahan-Pasternak N., Shimoni E., Shinder V., Von Huth H. P., Elbaum M. & Dzikowski R. (2011). 3D nuclear architecture reveals coupled cell cycle dynamics of chromatin and nuclear pores in the malaria parasite Plasmodium falciparum.  Cellular Microbiology. 13:(7)967-977.  Abstract
  3. Goldschmidt-Arzi M., Shimoni E., Sabanay H., Futerman A. H. & Addadi L. (2011). Intracellular localization of organized lipid domains of C16-ceramide/cholesterol.  Journal of Structural Biology. 175:(1)21-30.  Abstract
  4. Krieg E., Weissman H., Shirman E., Shimoni E. & Rybtchinski B. (2011). A recyclable supramolecular membrane for size-selective separation of nanoparticles.  Nature Nanotechnology. 6:(3)141-146.  Abstract
  5. Weissman H., Ustinov A., Shimoni E., Cohen S. & Rybtchinski B. (2011). Self-assembled two-dimensional porous network in aqueous solution based on perylene diimide phenylacetylene oligomer.  Polymers for Advanced Technologies. 22:(1)133-138.  Abstract


  1. Santosh G., Shirman E., Weissman H., Shimoni E., Pinkas I., Rudich Y. & Rybtchinski B. (2010). Photofunctional Self-Assembled Nanostructures Formed by Perylene Diimide-Gold Nanoparticle Hybrids.  Journal of Physical Chemistry B. 114:(45)14389-14396.  Abstract
  2. Goldschmidt M., Shimoni E., Sabanay H., Futerman A. H. & Addadi L. (2010). Antibodies as structural reporters of the presence of ordered domains in cell membranes.  Journal of Neurochemistry. 113:9-9.  Abstract
  3. Ziv K., Meir G., Harmelin A., Shimoni E., Klein E. & Neeman M. (2010). Ferritin as a reporter gene for MRI: chronic liver over expression of h-ferritin during dietary iron supplementation and aging.  NMR in Biomedicine. 23:(5)523-531.  Abstract
  4. Mahamid J., Aichmayer B., Shimoni E., Ziblat R., Li C., Siegel S., Paris O., Fratzl P., Weiner S. & Addadi L. (2010). Mapping amorphous calcium phosphate transformation into crystalline mineral from the cell to the bone in zebrafish fin rays.  Proceedings of the National Academy of Sciences of the United States of America. 107:(14)6316-6321.  Abstract
  5. Levy-Lior A., Shimoni E., Schwartz O., Gavish-Regev E., Oron D., Oxford G., Weiner S. & Addadi L. (2010). Guanine-Based Biogenic Photonic-Crystal Arrays in Fish and Spiders.  Advanced Functional Materials. 20:(2)320-329.  Abstract


  1. Gladnikoff M., Shimoni E., Gov N. & Rousso I. (2009). Retroviral Assembly and Budding Occur through an Actin-Driven Mechanism.  Biophysical Journal. 97:(9)2419-2428.  Abstract
  2. Krieg E., Shirman E., Weissman H., Shimoni E., Wolf S. G., Pinkas I. & Rybtchinski B. (2009). Supramolecular Gel Based on a Perylene Diimide Dye: Multiple Stimuli Responsiveness, Robustness, and Photofunction.  Journal of the American Chemical Society. 131:(40)14365-14373.  Abstract
  3. Nevo R., Chuartzman S. G., Tsabari O., Reich Z., Charuvi D. & Shimoni E. (2009). Architecture of Thylakoid Membrane Networks.  Lipids In Photosynthesis: Essential And Regulatory Functions. 30:295-327.  Abstract


  1. Brumfeld V., Charuvi D., Nevo R., Chuartzman S., Tsabari O., Ohad I., Shimoni E. & Reich Z. (2008). A Note on Three-Dimensional Models of Higher-Plant Thylakoid Networks.  Plant Cell. 20:(10)2546-2549.
  2. Peretti D., Dahan N., Shimoni E., Hirschberg K. & Lev S. (2008). Coordinated lipid transfer between the endoplasmic reticulum and the Golgi complex requires the VAP proteins and is essential for Golgi-mediated transport.  Molecular Biology of the Cell. 19:(9)3871-3884.  Abstract
  3. Zauberman N., Mutsafi Y., Ben Halevy H. D., Shimoni E., Klein E., Xiao C., Sun S. & Minsky A. (2008). Distinct DNA exit and packaging portals in the virus Acanthamoeba polyphaga mimivirus.  PLoS Biology. 6:(5)1104-1114.  Abstract
  4. Nudelman F., Shimoni E., Klein E., Rousseau M., Bourrat X., Lopez E., Addadi L. & Weiner S. (2008). Forming nacreous layer of the shells of the bivalves Atrina rigida and Pinctada margaritifera: An environmental- and cryo-scanning electron microscopy study.  Journal of Structural Biology. 162:(2)290-300.  Abstract
  5. Chuartzman S. G., Nevo R., Shimoni E., Charuvi D., Kiss V., Ohad I., Brumfeld V. & Reich Z. (2008). Thylakoid membrane remodeling during state transitions in Arabidopsis.  Plant Cell. 20:(4)1029-1039.  Abstract
  6. Cohen-Ben-Lulu G. N., Francis N. R., Shimoni E., Noy D., Davidov Y., Prasad K., Sagi Y., Cecchini G., Johnstone R. M. & Eisenbach M. (2008). The bacterial flagellar switch complex is getting more complex.  EMBO Journal. 27:(7)1134-1144.  Abstract


  1. Paz Y., Shimoni E., Weiss M. & Pick U. (2007). Effects of iron deficiency on iron binding and internalization into acidic vacuoles in Dunaliella salina.  Plant Physiology. 144:(3)1407-1415.  Abstract
  2. Nevo R., Charuvi D., Shimoni E., Schwarz R., Kaplan A., Ohad I. & Reich Z. (2007). Thylakoid membrane perforations and connectivity enable intracellular traffic in cyanobacteria.  EMBO Journal. 26:(5)1467-1473.  Abstract


  1. Minsky A., Shimoni E. & Englander J. (2006). Rebuttal: Study of the Deinococcus radiodurans nucleoid.  Journal of Bacteriology. 188:(17)6059-6059.
  2. Minsky A., Shimoni E. & Englander J. (2006). Ring-like nucleoids and DNA repair through error-free nonhomologous end joining in Deinococcus radiodurans.  Journal of Bacteriology. 188:(17)6047-6051.


  1. Shimoni E., Rav-Hon O., Ohad I., Brumfeld V. & Reich Z. (2005). Three-dimensional organization of higher-plant chloroplast thylakoid membranes revealed by electron tomography.  Plant Cell. 17:(9)2580-2586.  Abstract


  1. Frenkiel-Krispin D., Sack R., Englander J., Shimoni E., Eisenstein M., Bullitt E., Horowitz-Scherer R., Hayes C., Setlow P., Minsky A. & Wolf S. G. (2004). Structure of the DNA-SspC complex: Implications for DNA packaging, protection, and repair in bacterial spores.  Journal of Bacteriology. 186:(11)3525-3530.  Abstract
  2. Frenkiel-Krispin D., Ben-Avraham I., Englander J., Shimoni E., Wolf S. G. & Minsky A. (2004). Nucleoid restructuring in stationary-state bacteria.  Molecular Microbiology. 51:(2)395-405.  Abstract


  1. Levin-Zaidman S., Englander J., Shimoni E., Sharma A., Minton K. & Minsky A. (2003). Ringlike structure of the Deinococcus radiodurans genome: A key to radioresistance?.  Science. 299:(5604)254-256.  Abstract


  1. Herskovits A., Shimoni E., Minsky A. & Bibi E. (2002). Accumulation of endoplasmic membranes and novel membrane-bound ribosome-signal recognition particle receptor complexes in Escherichia coli.  Journal of Cell Biology. 159:(3)403-410.  Abstract
  2. Minsky A., Shimoni E. & Frenkiel-Krispin D. (2002). Stress, order and survival.  Nature Reviews Molecular Cell Biology. 3:(1)50-60.  Abstract


  1. Frenkiel-Krispin D., Levin-Zaidman S., Shimoni E., Wolf S. G., Wachtel E., Arad T., Finkel S., Kolter R. & Minsky A. (2001). Regulated phase transitions of bacterial chromatin: a non-enzymatic pathway for generic DNA protection.  EMBO Journal. 20:(5)1184-1191.  Abstract


  1. Levin-Zaidman S., Frenkiel-Krispin D., Shimoni E., Sabanay I., Wolf S. G. & Minsky A. (2000). Ordered intracellular RecA-DNA assemblies: A potential site of in vivo RecA-mediated activities.  Proceedings of the National Academy of Sciences of the United States of America. 97:(12)6791-6796.  Abstract