1. Dana Charuvi; Reinat Nevo; Elinor Aviv-Sharon; Assaf Gal; Vladimir Kiss; Eyal Shimoni; Jill M. Farrant; Helmut Kirchhoff; Ziv Reich (2019). Chloroplast breakdown during dehydration of a homoiochlorophyllous resurrection plant proceeds via senescence-like processes.  Environmental and Experimental Botany. 157:100-111.  Abstract


  1. Gal Mor Khalifa; Keren Kahil; Jonathan Erez; Ifat Kaplan Ashiri; Eyal Shimoni; Iddo Pinkas; Lia Addadi; Steve Weiner (2018). Characterization of unusual MgCa particles involved in the formation of foraminifera shells using a novel quantitative cryo SEM/EDS protocol.  Acta Biomaterialia. 77:342-351.  Abstract
  2. Erez Cohen; Haim Weissman; Iddo Pinkas; Eyal Shimoni; Pavel Rehak; Petr Kral; Boris Rybtchinski (2018). Controlled Self-Assembly of Photofunctional Supramolecular Nanotubes.  ACS Nano. 12:(1)317-326.  Abstract
  3. Sharon G. Wolf; Eyal Shimoni; Michael Elbaum; Lothar Houben (2018). STEM Tomography in Biology.  Cellular Imaging: Electron Tomography and Related Techniques. 33-60.


  1. Elad Milrot; Eyal Shimoni; Tali Dadosh; Katya Rechav; Tamar Unger; Etten, James L. Van Etten; Abraham Minsky (2017). Structural studies demonstrating a bacteriophage-like replication cycle of the eukaryote-infecting Paramecium bursaria chlorella virus-1.  PLoS Pathogens. 13:(8)  Abstract
  2. Elad Nagar; Shaul Zilberman; Eleonora Sendersky; Ryan Simkovsky; Eyal Shimoni; Diana Gershtein; Moshe Herzberg; Susan S. Golden; Rakefet Schwarz (2017). Type 4 pili are dispensable for biofilm development in the cyanobacterium Synechococcus elongatus.  Environmental Microbiology. 19:(7)2862-2872.  Abstract
  3. Rebecca H. Herbst; Dana Bar-Zvi; Sharon Reikhav et al. (2017). Heterosis as a consequence of regulatory incompatibility.  BMC Biology. 15.  Abstract [All authors]
  4. Erez Cohen; Haim Weissman; Eyal Shimoni; Ifat Kaplan-Ashiri; Kai Werle; Wendel Wohlleben; Boris Rybtchinski (2017). Robust Aqua Material: A Pressure-Resistant Self-Assembled Membrane for Water Purification.  ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 56:(8)2203-2207.  Abstract


  1. Lia Addadi; Neta Varsano; Sergei Kapishnikov; E Pereiro; Eyal Shimoni; Tali Dadosh; Xuhui Jin; HS Kruth; Leslie Leiserowitz (2016). Development of Correlative Cryo-soft X-ray Tomography and Stochastic Reconstruction Microscopy. A Study of Cholesterol Crystal Early Formation in Cells.  Journal of the American Chemical Society. 138:(45)14931-14940.  Abstract
  2. Dana Charuvi; Reinat Nevo; Ifat Kaplan-Ashiri; Eyal Shimoni; Ziv Reich (2016). Studying the Supramolecular Organization of Photosynthetic Membranes within Freeze-fractured Leaf Tissues by Cryo-scanning Electron Microscopy.  Jove-Journal Of Visualized Experiments. (112)  Abstract
  3. Michael Kerschnitzki; Anat Akiva; Shoham, Adi Ben Shoham et al. (2016). Transport of membrane-bound mineral particles in blood vessels during chicken embryonic bone development.  Bone. 83:65-72.  Abstract [All authors]
  4. Elad Milrot; Yael Mutsafi; Sirkis, Yael Fridmann Sirkis; Eyal Shimoni; Katya Rechav; James R. Gurnon; Etten, James L. Van Etten; Abraham Minsky (2016). Virus-Host Interactions: Insights From The Replication Cycle Of The Large Paramecium Bursaria Chlorella Virus.  Cellular Microbiology. 18:(1)3-16.  Abstract


  1. Nagaraju Dhanyasi; Dagan Segal; Eyal Shimoni; Vera Shinder; Ben-Zion Shilo; K VijayRaghavan; Eyal D Schejter (2015). Surface apposition and multiple cell contacts promote myoblast fusion in Drosophila flight muscles.  The Journal of cell biology. 211:(1)191-203.  Abstract
  2. Y Elbaz-Alon; M Eisenberg-Bord; Vera Shinder; SB Stiller; Eyal Shimoni; N Wiedemann; T Geiger; Maya Schuldiner (2015). Lam6 Regulates the Extent of Contacts between Organelles.  Cell Reports. 12:(1)7-14.  Abstract
  3. Yael Tsarfati; V Strauss; S Kuhri; E Krieg; Haim Weissman; Eyal Shimoni; Jonathan Baram; DM Guldi; Boris Rybtchinski (2015). Dispersing Perylene Diimide/SWCNT Hybrids: Structural Insights at the Molecular Level and Fabricating Advanced Materials.  Journal of the American Chemical Society. 137:(23)7429-7440.  Abstract
  4. Ron Saar Dover; Arkady Bitler; Eyal Shimoni; Patrick Trieu-Cuot; Yechiel Shai (2015). Multiparametric AFM reveals turgor-responsive net-like peptidoglycan architecture in live streptococci.  Nature Communications. 6.  Abstract
  5. Dana Charuvi; Reinat Nevo; Eyal Shimoni; Leah Naveh; Ahmad Zia; Zach Adam; Jill M. Farrant; Helmut Kirchhoff; Ziv Reich (2015). Photoprotection Conferred by Changes in Photosynthetic Protein Levels and Organization during Dehydration of a Homoiochlorophyllous Resurrection Plant.  Plant Physiology. 167:(4)1554-U689.  Abstract


  1. Nagaraju Dhanyasi; Eyal Shimoni; Vera Shinder; K Vijayraghavan; Ben-Zion Shilo; ED Schejter (2014). Tight apposition and multiple cell-cell contacts mediate myoblast fusion in Drosophila.  Molecular Biology of the Cell. 25.  Abstract
  2. Elisha Krieg; Haim Weissman; Eyal Shimoni; (Ustinoy), Alona Bar On (Ustinoy); Boris Rybtchinski (2014). Understanding the Effect of Fluorocarbons in Aqueous Supramolecular Polymerization: Ultrastrong Noncovalent Binding and Cooperativity.  Journal of the American Chemical Society. 136:(26)9443-9452.  Abstract
  3. Lital Davidi; Eyal Shimoni; Inna Khozin-Goldberg; Ada Zamir; Uri Pick (2014). Origin of beta-Carotene-Rich Plastoglobuli in Dunaliella bardawil1.  Plant Physiology. 164:(4)2139-2156.  Abstract
  4. Netta Vidavsky; Sefi Addadi; Julia Mahamid; Eyal Shimoni; David Ben-Ezra; Muki Shpigel; Steve Weiner; Lia Addadi (2014). Initial stages of calcium uptake and mineral deposition in sea urchin embryos.  Proceedings of the National Academy of Sciences of the United States of America. 111:(1)39-44.  Abstract


  1. Sergey Kapishnikov; Allon Weiner; Eyal Shimoni; Gerd Schneider; Michael Elbaum; Leslie Leiserowitz (2013). Digestive Vacuole Membrane in Plasmodium falciparum-Infected Erythrocytes: Relevance to Templated Nucleation of Hemozoin.  Langmuir. 29:(47)14595-14602.  Abstract
  2. Nelia Shechter; Liron Zaltzman; Allon Weiner; Vlad Brumfeld; Eyal Shimoni; Sirkis, Yael Fridmann Sirkis; Abraham Minsky (2013). Stress-induced Condensation of Bacterial Genomes Results in Re-pairing of Sister Chromosomes IMPLICATIONS FOR DOUBLE STRAND DNA BREAK REPAIR.  Journal of Biological Chemistry. 288:(35)25659-25667.  Abstract
  3. Raya Sorkin; Nir Kampf; Yael Dror; Eyal Shimoni; Jacob Klein (2013). Origins of extreme boundary lubrication by phosphatidylcholine liposomes.  Biomaterials. 34:(22)5465-5475.  Abstract
  4. Daniella Schatz; Elad Nagar; Eleonora Sendersky et al. (2013). Self-suppression of biofilm formation in the cyanobacterium Synechococcus elongatus.  Environmental Microbiology. 15:(6)1786-1794.  Abstract [All authors]
  5. Elisha Krieg; Shira Albeck; Haim Weissman; Eyal Shimoni; Boris Rybtchinski (2013). Separation, Immobilization, and Biocatalytic Utilization of Proteins by a Supramolecular Membrane.  PLoS One. 8:(5)  Abstract
  6. Yael Mutsafi; Eyal Shimoni; Amir Shimon; Abraham Minsky (2013). Membrane Assembly during the Infection Cycle of the Giant Mimivirus.  PLoS Pathogens. 9:(5)  Abstract
  7. Allon Weiner; Sergey Kapishnikov; Eyal Shimoni; Sandra Cordes; Peter Guttmann; Gerd Schneider; Michael Elbaum (2013). Vitrification of thick samples for soft X-ray cryo-tomography by high pressure freezing.  Journal of Structural Biology. 181:(1)77-81.  Abstract


  1. Ehud Peled; Uri Pick; Aliza Zarka; Eyal Shimoni; Stefan Leu; Sammy Boussiba (2012). LIGHT-INDUCED OIL GLOBULE MIGRATION IN HAEMATOCOCCUS PLUVIALIS (CHLOROPHYCEAE).  Journal of Phycology. 48:(5)1209-1219.  Abstract
  2. Dover, Ron Saar Dover; Arkadi Bitler; Ravit Nezer; Liraz Shmuel-Galia; Arnaud Firon; Eyal Shimoni; Patrick Trieu-Cuot; Yechiel Shai (2012). D-Alanylation of Lipoteichoic Acids Confers Resistance to Cationic Peptides in Group B Streptococcus by Increasing the Cell Wall Density.  PLoS Pathogens. 8:(9)  Abstract
  3. Sergey Kapishnikov; Allon Weiner; Eyal Shimoni; Peter Guttmann; Gerd Schneider; Noa Dahan-Pasternak; Ron Dzikowski; Leslie Leiserowitz; Michael Elbaum (2012). Oriented nucleation of hemozoin at the digestive vacuole membrane in Plasmodium falciparum.  Proceedings of the National Academy of Sciences of the United States of America. 109:(28)11188-11193.  Abstract
  4. Dana Charuvi; Vladimir Kiss; Reinat Nevo; Eyal Shimoni; Zach Adam; Ziv Reich (2012). Gain and Loss of Photosynthetic Membranes during Plastid Differentiation in the Shoot Apex of Arabidopsis.  Plant Cell. 24:(3)1143-1157.  Abstract
  5. Hagit Goclaw-Binder; Eleonora Sendersky; Eyal Shimoni; Vladimir Kiss; Ziv Reich; Alexander Perelman; Rakefet Schwarz (2012). Nutrient-associated elongation and asymmetric division of the cyanobacterium Synechococcus PCC 7942.  Environmental Microbiology. 14:(3)680-690.  Abstract


  1. Helmut Kirchhoff; Chris Hall; Magnus Wood; Miroslava Herbstova; Onie Tsabari; Reinat Nevo; Dana Charuvi; Eyal Shimoni; Ziv Reich (2011). Dynamic control of protein diffusion within the granal thylakoid lumen.  Proceedings of the National Academy of Sciences of the United States of America. 108:(50)20248-20253.  Abstract
  2. Allon Weiner; Noa Dahan-Pasternak; Eyal Shimoni; Vera Shinder; Huth, Palle Von Huth; Michael Elbaum; Ron Dzikowski (2011). 3D nuclear architecture reveals coupled cell cycle dynamics of chromatin and nuclear pores in the malaria parasite Plasmodium falciparum.  Cellular Microbiology. 13:(7)967-977.  Abstract
  3. Michal Goldschmidt-Arzi; Eyal Shimoni; Helena Sabanay; Anthony H. Futerman; Lia Addadi (2011). Intracellular localization of organized lipid domains of C16-ceramide/cholesterol.  Journal of Structural Biology. 175:(1)21-30.  Abstract
  4. Elisha Krieg; Haim Weissman; Elijah Shirman; Eyal Shimoni; Boris Rybtchinski (2011). A recyclable supramolecular membrane for size-selective separation of nanoparticles.  Nature Nanotechnology. 6:(3)141-146.  Abstract
  5. Haim Weissman; Alona Ustinov; Eyal Shimoni; Sidney Cohen; Boris Rybtchinski (2011). Self-assembled two-dimensional porous network in aqueous solution based on perylene diimide phenylacetylene oligomer.  Polymers for Advanced Technologies. 22:(1)133-138.  Abstract


  1. G. Santosh; Elijah Shirman; Haim Weissman; Eyal Shimoni; Iddo Pinkas; Yinon Rudich; Boris Rybtchinski (2010). Photofunctional Self-Assembled Nanostructures Formed by Perylene Diimide-Gold Nanoparticle Hybrids.  Journal of Physical Chemistry B. 114:(45)14389-14396.  Abstract
  2. Michal Goldschmidt; Eyal Shimoni; Helena Sabanay; Anthony H. Futerman; Lia Addadi (2010). Antibodies as structural reporters of the presence of ordered domains in cell membranes.  Journal of Neurochemistry. 113:9-9.  Abstract
  3. Keren Ziv; Gila Meir; Alon Harmelin; Eyal Shimoni; Eugenia Klein; Michal Neeman (2010). Ferritin as a reporter gene for MRI: chronic liver over expression of h-ferritin during dietary iron supplementation and aging.  NMR in Biomedicine. 23:(5)523-531.  Abstract
  4. Julia Mahamid; Barbara Aichmayer; Eyal Shimoni et al. (2010). Mapping amorphous calcium phosphate transformation into crystalline mineral from the cell to the bone in zebrafish fin rays.  Proceedings of the National Academy of Sciences of the United States of America. 107:(14)6316-6321.  Abstract [All authors]
  5. Avital Levy-Lior; Eyal Shimoni; Osip Schwartz; Efrat Gavish-Regev; Dan Oron; Geoff Oxford; Steve Weiner; Lia Addadi (2010). Guanine-Based Biogenic Photonic-Crystal Arrays in Fish and Spiders.  Advanced Functional Materials. 20:(2)320-329.  Abstract


  1. Micha Gladnikoff; Eyal Shimoni; Nir Gov; Itay Rousso (2009). Retroviral Assembly and Budding Occur through an Actin-Driven Mechanism.  Biophysical Journal. 97:(9)2419-2428.  Abstract
  2. Elisha Krieg; Elijah Shirman; Haim Weissman; Eyal Shimoni; Sharon G. Wolf; Iddo Pinkas; Boris Rybtchinski (2009). Supramolecular Gel Based on a Perylene Diimide Dye: Multiple Stimuli Responsiveness, Robustness, and Photofunction.  Journal of the American Chemical Society. 131:(40)14365-14373.  Abstract
  3. Reinat Nevo; Silvia G. Chuartzman; Onie Tsabari; Ziv Reich; Dana Charuvi; Eyal Shimoni (2009). Architecture of Thylakoid Membrane Networks.  Lipids In Photosynthesis: Essential And Regulatory Functions. 295-+.  Abstract


  1. Vlad Brumfeld; Dana Charuvi; Reinat Nevo; Silvia Chuartzman; Onie Tsabari; Itzhak Ohad; Eyal Shimoni; Ziv Reich (2008). A Note on Three-Dimensional Models of Higher-Plant Thylakoid Networks.  Plant Cell. 20:(10)2546-2549.
  2. Diego Peretti; Nili Dahan; Eyal Shimoni; Koret Hirschberg; Sima Lev (2008). Coordinated lipid transfer between the endoplasmic reticulum and the Golgi complex requires the VAP proteins and is essential for Golgi-mediated transport.  Molecular Biology of the Cell. 19:(9)3871-3884.  Abstract
  3. Nathan Zauberman; Yael Mutsafi; Halevy, Daniel Ben Halevy; Eyal Shimoni; Eugenia Klein; Chuan Xiao; Siyang Sun; Abraham Minsky (2008). Distinct DNA exit and packaging portals in the virus Acanthamoeba polyphaga mimivirus.  PLoS Biology. 6:(5)1104-1114.  Abstract
  4. Fablo Nudelman; Eyal Shimoni; Eugenia Klein; Marthe Rousseau; Xavier Bourrat; Evelyne Lopez; Lia Addadi; Steve Weiner (2008). Forming nacreous layer of the shells of the bivalves Atrina rigida and Pinctada margaritifera: An environmental- and cryo-scanning electron microscopy study.  Journal of Structural Biology. 162:(2)290-300.  Abstract
  5. Silvia G. Chuartzman; Reinat Nevo; Eyal Shimoni; Dana Charuvi; Vladimir Kiss; Itzhak Ohad; Vlad Brumfeld; Ziv Reich (2008). Thylakoid membrane remodeling during state transitions in Arabidopsis.  Plant Cell. 20:(4)1029-1039.  Abstract
  6. Galit N. Cohen-Ben-Lulu; Noreen R. Francis; Eyal Shimoni et al. (2008). The bacterial flagellar switch complex is getting more complex.  EMBO Journal. 27:(7)1134-1144.  Abstract [All authors]


  1. Yakov Paz; Eyal Shimoni; Meira Weiss; Uri Pick (2007). Effects of iron deficiency on iron binding and internalization into acidic vacuoles in Dunaliella salina.  Plant Physiology. 144:(3)1407-1415.  Abstract
  2. Reinat Nevo; Dana Charuvi; Eyal Shimoni; Rakefet Schwarz; Aaron Kaplan; Itzhak Ohad; Ziv Reich (2007). Thylakoid membrane perforations and connectivity enable intracellular traffic in cyanobacteria.  EMBO Journal. 26:(5)1467-1473.  Abstract
  3. Vlad Brumfeld; Dana Charuvi; S. Chuartzman et al. (2007). Architecture, connectivity and dynamics of thylakoid membranes.  Photosynthesis Research. 91:(3-Feb)211-211.  Abstract [All authors]


  1. Abraham Minsky; Eyal Shimoni; Joseph Englander (2006). Rebuttal: Study of the Deinococcus radiodurans nucleoid.  Journal of Bacteriology. 188:(17)6059-6059.
  2. Abraham Minsky; Eyal Shimoni; Joseph Englander (2006). Ring-like nucleoids and DNA repair through error-free nonhomologous end joining in Deinococcus radiodurans.  Journal of Bacteriology. 188:(17)6047-6051.


  1. Eyal Shimoni; O Rav-Hon; I Ohad; Vlad Brumfeld; Ziv Reich (2005). Three-dimensional organization of higher-plant chloroplast thylakoid membranes revealed by electron tomography.  Plant Cell. 17:(9)2580-2586.  Abstract


  1. D Frenkiel-Krispin; R Sack; Joseph Englander et al. (2004). Structure of the DNA-SspC complex: Implications for DNA packaging, protection, and repair in bacterial spores.  Journal of Bacteriology. 186:(11)3525-3530.  Abstract [All authors]
  2. D Frenkiel-Krispin; I Ben-Avraham; Joseph Englander; Eyal Shimoni; Sharon G. Wolf; Abraham Minsky (2004). Nucleoid restructuring in stationary-state bacteria.  Molecular Microbiology. 51:(2)395-405.  Abstract


  1. Smadar Levin-Zaidman; Joseph Englander; Eyal Shimoni; AK Sharma; KW Minton; Abraham Minsky (2003). Ringlike structure of the Deinococcus radiodurans genome: A key to radioresistance?.  Science. 299:(5604)254-256.  Abstract


  1. AA Herskovits; Eyal Shimoni; Abraham Minsky; Eitan Bibi (2002). Accumulation of endoplasmic membranes and novel membrane-bound ribosome-signal recognition particle receptor complexes in Escherichia coli.  Journal of Cell Biology. 159:(3)403-410.  Abstract
  2. Abraham Minsky; Eyal Shimoni; D Frenkiel-Krispin (2002). Stress, order and survival.  Nature Reviews Molecular Cell Biology. 3:(1)50-60.  Abstract


  1. D Frenkiel-Krispin; Smadar Levin-Zaidman; Eyal Shimoni; Sharon G. Wolf; EJ Wachtel; Talmon Arad; SE Finkel; R Kolter; Abraham Minsky (2001). Regulated phase transitions of bacterial chromatin: a non-enzymatic pathway for generic DNA protection.  EMBO Journal. 20:(5)1184-1191.  Abstract


  1. Smadar Levin-Zaidman; D Frenkiel-Krispin; Eyal Shimoni; I Sabanay; Sharon G. Wolf; Abraham Minsky (2000). Ordered intracellular RecA-DNA assemblies: A potential site of in vivo RecA-mediated activities.  Proceedings of the National Academy of Sciences of the United States of America. 97:(12)6791-6796.  Abstract