Walz, D. and Caplan, S.R. Nonequilibrium thermodynamics and kinetics. (1995) In: Caplan, S.R., Miller,I.R., and Milazzo, G. (eds.) "Bioelectrochemistry: Principles and Practice, Vol. 1. Bioelectrochemistry: General Introduction", Birkhäuser Verlag, Basel, pp. 1-48.
Walz, D., Caplan, S.R., Scriven, D.R.L., and Mikulecky, D.C. Methods of mathematical modelling. (1995) In: Caplan, S.R., Miller,I.R., and Milazzo, G. (eds.) "Bioelectrochemistry: Principles and Practice, Vol. 1. Bioelectrochemistry: General Introduction", Birkhäuser Verlag, Basel, pp. 49-131.
Raif-Preminger, M., Caplan, S.R., and Yuli, I. (1995) Temporal segregation in signalling: a novel mechanism in human neutrophils. Biochim. Biophys. Acta 1265: 49-54.
Welch, M., Margolin, Y., Caplan, S.R., and Eisenbach, M. (1995) Rotational asymmetry of Escherichia coli flagellar motor in the presence of arsenate. Biochim. Biophys. Acta 1268: 81-87.
Kara-Ivanov, M., Eisenbach, M., and Caplan, S.R. (1995) Fluctuations in rotation rate of the flagellar motor of Escherichia coli. Biophys. J. 69: 250-263.
Walz, D. and Caplan, S.R. (1995) Chemical oscillations arise solely from kinetic nonlinearity and hence can occur near equilibrium. Biophys. J. 69: 1698-1707.
Turner, L., Caplan, S.R., and Berg, H.C. (1996) Temperature-induced switching of the bacterial flagellar motor. Biophys. J. 71: 2227-2233.
Prasad, K., Caplan, S.R., and Eisenbach, M. (1998) Fumarate modulates bacterial flagellar rotation by lowering the free energy difference between the clockwise and counterclockwise states of the motor. J. Mol. Biol. 280: 821-828.
Wagner, C., Caplan, S.R., and Tannenbaum, G.S. (1998) Genesis of the ultradian rhythm of GH secretion: a new model unifying experimental observations in rats. Am. J. Physiol. 275 (Endocrinol. Metab. 38): E1046-E1054.
Walz, D. and Caplan, S.R. (1998) An electrostatic model of the bacterial flagellar motor. Bioelectrochem. and Bioenergetics, 47: 19-24.
Eisenbach, M. and Caplan, S.R. (1998) Bacterial chemotaxis: Unsolved mystery of the flagellar switch. Current Biology 8: R444-R446.
Caplan, S.R. and Walz, D. (1999) The bacterial flagellar motor: a brief review of models, and a new electrostatic model. In: Bersani, F. (ed.) "Electricity and Magnetism in Biology and Medicine", Plenum, N.Y., pp. 251-254.
Walz, D. and Caplan, S.R. An electrostatic mechanism closely reproducing observed behavior in the bacterial flagellar motor. Biophys. J. 78, 626-651 (2000).
Caplan, S.R. and Johnstone, R.M. (2001). Non-equilibrium thermodynamics and kinetics of the multidrug transporter. In: Raffa, R.B. (ed.) "Drug-Receptor Thermodynamics: Introduction and Applications", Wiley, N.Y., pp. 701-740.
Walz, D. and Caplan, S.R. (2002). Bacterial flagellar motor and H+/ATP synthase: two proton-driven rotary molecular devices with different functions. Bioelectrochemistry 55, 89-92.
Fabro, G., Rovasio, R.A., Civalero, S., Frenkel, A., Caplan, S.R., Eisenbach, M., and Giojalas, L.C. (2002). Chemo-taxis of Capacitated Rabbit Spermatozoa to Follicular Fluid R evealed by a Novel Directionality-Based Assay. Biology of Reproduction 67, 15651571.
Walz, D. and Caplan, S.R. (2005). A Kinetic and Stochastic Analysis of Crossbridge-Type Stepping Mechanisms in Rotary Molecular Motors. Biophys. J. 89, 1650-1656.
Gakamsky, A., Schechtman, E., Caplan, S.R., and Eisenbach,M. (2008) Analysis of chemotaxis when the fraction of responsive cells is small - application to mammalian sperm guidance. Int. J. Dev. Biol. 52, 481-487.
Wagner, C., Caplan, S.R., and Tannenbaum, G.S. (2009). Interactions of ghrelin signaling pathways with the GH neuroendocrine axis: a new and experimentally tested model. J. Molec. Endocrinology 43, 105–119
Zarbiv, G., Li, H., Wolf, A., Cecchini, G., Caplan, S.R., Sourjik, V., and Eisenbach, M. (2012). Energy complexes are apparently associated with the switch–motor complex of bacterial flagella. J. Mol. Biol. 416, 192–207.
Armon, L., Caplan, S.R., Eisenbach, M., and Friedrich, B.M. (2012). Testing human sperm chemotaxis: How to detect biased motion in population assays. PLoS ONE 7(3): e32909. doi:10.1371/journal.pone.0032909.
Bahat A, Caplan SR, Eisenbach M (2012). Thermotaxis of Human Sperm Cells in Extraordinarily Shallow Temperature Gradients Over a Wide Range. PLoS ONE 7(7): e41915. doi:10.1371/journal.pone.0041915.