Publications

Ben-Nissan G., Belov M. E., Morgenstern D., Levin Y., Dym O., Arkind G., Lipson G., Makarov A. A. & Sharon M. (). Triple-Stage Mass Spectrometry Unravels the Heterogeneity of an Endogenous Protein Complex.  Analytical Chemistry. 89:(8)4708-4715.
Shraga A., Olshvang E., Davidzohn N., Khoshkenar P., Germain N., Shurrush K., Carvalho S., Avram L., Albeck S., Unger T., Lefker B., Subramanyam C., Hudkins R. L., Mitchell A., Shulman Z., Kinoshita T. & London N. (). Covalent Docking Identifies a Potent and Selective MKK7 Inhibitor.  Cell Chemical Biology. 26:(1)98 - 108.
Rozenberg A., Kaczmarczyk I., Matzov D., Vierock J., Nagata T., Sugiura M., Katayama K., Kawasaki Y., Konno M., Nagasaka Y., Aoyama M., Das I., Pahima E., Church J., Adam S., Borin V. A., Chazan A., Augustin S., Wietek J., Dine J., Peleg Y., Kawanabe A., Fujiwara Y., Yizhar O., Sheves M., Schapiro I., Furutani Y., Kandori H., Inoue K., Hegemann P., Beja O. & Shalev-Benami M. (). Rhodopsin-bestrophin fusion proteins from unicellular algae form gigantic pentameric ion channels.  Nature Structural & Molecular Biology. 29:(6)592-603.
Romier C., Ben Jelloul M., Albeck S., Buchwald G., Busso D., Celie P. H., Christodoulou E., De Marco V., Van Gerwen S., Knipscheer P., Lebbink J. H., Notenboom V., Poterszman A., Rochel N., Cohen S. X., Unger T., Sussman J. L., Moras D., Sixma T. K. & Perrakis A. (). Co-expression of protein complexes in prokaryotic and eukaryotic hosts: Experimental procedures, database tracking and case studies.  Acta Crystallographica Section D: Biological Crystallography. 62:(10)1232-1242.
Berry I. M., Dym O., Esnouf R. M., Harlos K., Meged R., Perrakis A., Sussman J., Walter T. S., Wilson J. & Messerschmidt A. (). SPINE high-throughput crystallization, crystal imaging and recognition techniques: Current state, performance analysis, new technologies and future aspects.  Acta Crystallographica Section D: Biological Crystallography. 62:(10)1137-1149.
Juven-Gershon T., Shifman O., Unger T., Elkeles A., Haupt Y. & Oren M. (). The Mdm2 oncoprotein interacts with the cell fate regulator numb.  Molecular and Cellular Biology. 18:(7)3974-3982.
Daniel E., Maksimainen M. M., Smith N., Ratas V., Biterova E., Murthy S. N., Tanvir Rahman M., Kiema T. R., Sridhar S., Cordara G., Dalwani S., Venkatesan R., Prilusky J., Dym O., Lehtio L., Kristian Koski M., Ashton A. W., Sussman J. L. & Wierenga R. K. (). IceBear: An intuitive and versatile web application for research-data tracking from crystallization experiment to PDB deposition.  Acta Crystallographica Section D: Structural Biology. 77:(2)151-163.
Khmelnitsky L., Milo A., Dym O. & Fass D. (). Diversity of CysD domains in gel-forming mucins.  FEBS Journal.
Khersonsky O., RöThlisberger D., Dym O., Albeck S., Jackson C. J., Baker D. & Tawfik D. S. (). Evolutionary optimization of computationally designed enzymes: Kemp eliminases of the ke07 series.  Journal of Molecular Biology. 396:(4)1025-1042.
Vazana Y., Barak Y., Unger T., Peleg Y., Shamshoum M., Ben-Yehezkel T., Mazor Y., Shapiro E., Lamed R. & Bayer E. (). A synthetic biology approach for evaluating the functional contribution of designer cellulosome components to deconstruction of cellulosic substrates.  Biotechnology for Biofuels. 6:(1)
Bose T., Fridkin G., Davidovich C., Krupkin M., Dinger N., Falkovich A. H., Peleg Y., Agmon I., Bashan A. & Yonath A. (). Origin of life: protoribosome forms peptide bonds and links RNA and protein dominated worlds.  Nucleic Acids Research. 50:(4)1815-1828.
Peleg Y. & Unger T. (). Resolving bottlenecks for recombinant protein expression in E. coli.  . 173-186.
Busso D., Peleg Y., Heidebrecht T., Romier C., Jacobovitch Y., Dantes A., Salim L., Troesch E., Schuetz A., Heinemann U., Folkers G. E., Geerlof A., Wilmanns M., Polewacz A., Quedenau C., Buessow K., Adamson R., Blagova E., Walton J., Cartwright J. L., Bird L. E., Owens R. J., Berrow N. S., Wilson K. S., Sussman J., Perrakis A. & Celie P. H. N. (). Expression of protein complexes using multiple Escherichia coli protein co-expression systems: A benchmarking study.  Journal of Structural Biology. 175:(2)159-170.
Ben-David M., Soskine M., Dubovetskyi A., Cherukuri K., Dym O., Sussman J. L., Liao Q., Szeler K., Kamerlin S. C. L. & Tawfik D. S. (). Enzyme Evolution: An Epistatic Ratchet versus a Smooth Reversible Transition.  Molecular Biology and Evolution. 37:(4)1133-1147.
Goihberg E., Dym O., Tel-Or S., Levin I., Peretz M. & Burstein Y. (). A single proline substitution is critical for the thermostabilization of Clostridium beijerinckii alcohol dehydrogenase.  Proteins-Structure Function And Bioinformatics. 66:(1)196-204.
Pokorna S., Khersonsky O., Lipsh-Sokolik R., Goldenzweig A., Nielsen R., Ashani Y., Peleg Y., Unger T., Albeck S., Dym O., Tirosh A., Tarayra R., Hocquemiller M., Laufer R., Ben-Dor S., Silman I., Sussman J. L., Fleishman S. J. & Futerman A. H. (). Design of a stable human acid-β-glucosidase: towards improved Gaucher disease therapy and mutation classification.  FEBS Journal. 290:(13)3383-3399.
Addadi L., Aizenberg J., Albeck S., Berman A., Leiserowitz L. & Weiner S. (). Controlled occlusion of proteins: A tool for modulating the properties of skeletal elements.  Molecular Crystals and Liquid Crystals. 248:(1)185-198.
Unger T., Mietz J. A., Scheffner M., Yee C. L. & Howley P. M. (). Functional domains of wild-type and mutant p53 proteins involved in transcriptional regulation, transdominant inhibition, and transformation suppression.  Molecular and Cellular Biology. 13:(9)5186-94.
ZahradníK J., Marciano S., Shemesh M., Zoler E., Harari D., Chiaravalli J., Meyer B., Rudich Y., Li C., Marton I., Dym O., Elad N., Lewis M., Andersen H., Gagne M., Seder R., Douek D. & Schreiber G. (). SARS-CoV-2 variant prediction and antiviral drug design are enabled by RBD in vitro evolution.  Nature Microbiology. 6:(9)1188-1198.
Chaturvedi A. K., Dym O., Levin Y. & Fluhr R. (). PGR5-LIKE PHOTOSYNTHETIC PHENOTYPE1A redox states alleviate photoinhibition during changes in light intensity.  Plant Physiology. 194:(2)1059-1074.
Zeev-Ben-Mordehai T., Mylonas E., Paz A., Peleg Y., Toker L., Silman I., Svergun D. I. & Sussman J. (). The quaternary structure of amalgam, a Drosophila neuronal adhesion protein, explains its dual adhesion properties.  Biophysical Journal. 97:(8)2316-2326.
Tal L., Friedlander G., Gilboa N. S., Unger T., Gilad S. & Eshed Y. (). Coordination of Meristem Doming and the Floral Transition by Late Termination, a Kelch Repeat Protein.  Plant Cell. 29:(4)681-696.
Erez Z., Steinberger-Levy I., Shamir M., Doron S., Stokar Avihail A. A., Peleg Y., Melamed S., Leavitt A., Savidor A., Albeck S., Amitai G. & Sorek R. (). Communication between viruses guides lysis-lysogeny decisions.  Nature. 541:(7638)488-493.
Scheerer D., Adkar B. V., Bhattacharyya S., Levy D., Iljina M., Riven I., Dym O., Haran G. & Shakhnovich E. I. (). Allosteric communication between ligand binding domains modulates substrate inhibition in adenylate kinase.  Proceedings of the National Academy of Sciences - PNAS. 120:(18)
Itkin M., Heinig U., Tzfadia O., Bhide A. J., Shinde B. A., Cardenas P. D., Bocobza S. E., Unger T., Malitsky S., Finkers R., Tikunov Y., Bovy A., Chikate Y. R., Singh P., Rogachev I., Beekwilder J., Giri A. P. & Aharoni A. (). Biosynthesis of antinutritional alkaloids in solanaceous crops is mediated by clustered genes.  Science. 341:(6142)175-179.
Quinn S., Zhang N., Fenton T. A., Brusel M., Muruganandam P., Peleg Y., Giladi M., Haitin Y., Lerche H., Bassan H., Liu Y., Ben-Shalom R. & Rubinstein M. (). Complex biophysical changes and reduced neuronal firing in an SCN8A variant associated with developmental delay and epilepsy.  Biochimica et Biophysica Acta - Molecular Basis of Disease. 1870:(5)
Asher G., Dym O., Tsvetkov P., Adler J. & Shaul Y. (). The crystal structure of NAD(P)H quinone oxidoreductase 1 in complex with its potent inhibitor dicoumarol.  Biochemistry. 45:(20)6372-6378.
Hatai J., Prasad P. K., Lahav-Mankovski N., Oppenheimer-Low N., Unger T., Sirkis Y. F., Dadosh T., Motiei L. & Margulies D. (). Assessing changes in the expression levels of cell surface proteins with a turn-on fluorescent molecular probe.  Chemical Communications. 57:(15)1875-1878.
Gould N. L., Scherer G. R., Carvalho S., Shurrush K., Kayyal H., Edry E., Elkobi A., David O., Foqara M., Thakar D., Pavesi T., Sharma V., Walker M., Maitland M., Dym O., Albeck S., Peleg Y., Germain N., Babaev I., Sharir H., Lalzar M., Shklyar B., Hazut N., Khamaisy M., LéVesque M., Lajoie G., Avoli M., Amitai G., Lefker B., Subramanyam C., Shilton B., Barr H. & Rosenblum K. (). Specific quinone reductase 2 inhibitors reduce metabolic burden and reverse Alzheimer’s disease phenotype in mice.  Journal of Clinical Investigation. 133:(19)
Bharat T. A. M., Zbaida D., Eisenstein M., Frankenstein Z., Mehlman T., Weiner L., Sorzano C. O. S., Barak Y., Albeck S., Briggs J. A. G., Wolf S. G. & Elbaum M. (). Variable internal flexibility characterizes the helical capsid formed by agrobacterium VirE2 protein on single-stranded DNA.  Structure. 21:(7)1158-1167.
Khersonsky O., Lipsh R., Avizemer Z., Ashani Y., Goldsmith M., Leader H., Dym O., Rogotner S., Trudeau D. L., Prilusky J., Amengual-Rigo P., Guallar V., Tawfik D. S. & Fleishman S. J. (). Automated Design of Efficient and Functionally Diverse Enzyme Repertoires.  Molecular Cell. 72:(1)178-186.e5.
Sonawane P. D., Jozwiak A., Barbole R., Panda S., Abebie B., Kazachkova Y., Gharat S. A., Ramot O., Unger T., Wizler G., Meir S., Rogachev I., Doron-Faigenboim A., Petreikov M., Schaffer A., Giri A. P., Scherf T. & Aharoni A. (). 2-Oxoglutarate-Dependent Dioxygenases Drive Expansion of Steroidal Alkaloid Structural Diversity in the Genus Solanum.  The New Phytologist. 234:(4)1394-1410.
Unger T. & Peleg Y. (). Recombinant protein expression in the baculovirus-infected insect cell system.  . 187-199.
Goihberg E., Peretz M., Tel-Or S., Dym O., Shimon L., Frolow F. & Burstein Y. (). Biochemical and structural properties of chimeras constructed by exchange of cofactor-binding domains in alcohol dehydrogenases from thermophilic and mesophilic microorganisms.  Biochemistry. 49:(9)1943-1953.
Zeev-Ben-Mordehai T., Paz A., Peleg Y., Toker L., Wolf S. G., Rydberg E. H., Sussman J. & Silman I. (). Amalgam, an axon guidance Drosophila adhesion protein belonging to the immunoglobulin superfamily: Over-expression, purification and biophysical characterization.  Protein Expression and Purification. 63:(2)147-157.
Albeck S., Weiner S. & Addadi L. (). Polysaccharides of intracrystalline glycoproteins modulate calcite crystal growth in vitro.  Chemistry-A European Journal. 2:(3)278-284.
Goldsmith M., Barad S., Knafo M., Savidor A., Ben-Dor S., Brandis A., Mehlman T., Peleg Y., Albeck S., Dym O., Ben-Zeev E., Barbole R. S., Aharoni A. & Reich Z. (). Identification and characterization of the key enzyme in the biosynthesis of the neurotoxin β-ODAP in grass pea.  The journal of Biological chemistry. 298:(5)
Albeck S., Aizenberg J., Addadi L. & Weiner S. (). Interactions of Various Skeletal Intracrystalline Components with Calcite Crystals.  Journal of the American Chemical Society. 115:(25)11691-11697.
Meltzer H., Marom E., Alyagor I., Mayseless O., Berkun V., Segal-Gilboa N., Unger T., Luginbuhl D. & Schuldiner O. (). Tissue-specific (ts) CRISPR as an efficient strategy for in vivo screening in Drosophila.  Nature Communications. 10.
Ofir-Birin Y., Ben Ami Pilo H., Camacho A. C., Rudik A., Rivkin A., Revach O., Nir N., Tamin T. B., Karam P. A., Kiper E., Peleg Y., Nevo R., Solomon A., Havkin-Solomon T., Rojas A., Rotkopf R., Porat Z., Avni D., Schwartz E., Zillinger T., Hartmann G., Di Pizio A., Ben Quashie N., Dikstein R., Gerlic M., Torrecilhas A. C., Levy C., Hoen E. N. M. N., Bowie A. G. & Regev-Rudzki N. (). Malaria parasites both repress host CXCL10 and use it as a cue for growth acceleration.  Nature Communications. 12:(1)
Yeshaya N., Gupta P. K., Dym O., Morgenstern D., Major D. T. & Fass D. (). VWD domain stabilization by autocatalytic Asp-Pro cleavage.  Protein Science. 33:(3)
Erijman A., Shifman J. M. & Peleg Y. (). A single-tube assembly of DNA using the transfer-PCR (TPCR) platform.  . 89-101.
Sonawane P. D., Pollier J., Panda S., Szymanski J., Massalha H., Yona M., Unger T., Malitsky S., Arendt P., Pauwels L., Almekias-Siegl E., Rogachev I., Meir S., Cardenas P. D., Masri A., Petrikov M., Schaller H., Schaffer A. A., Kamble A., Giri A. P., Goossens A. & Aharoni A. (). Plant cholesterol biosynthetic pathway overlaps with phytosterol metabolism.  Nature Plants. 3.
Sela-Passwell N. A., Kikkeri R., Dym O., Rozenberg H., Margalit R., Arad-Yellin R., Eisenstein M., Brenner O., Shoham T., Danon T., Shanzer A. & Sagi I. (). Antibodies targeting the catalytic zinc complex of activated matrix metalloproteinases show therapeutic potential.  Nature Medicine. 18:(1)143-147.
Rezenman S., Knafo M., Tsigalnitski I., Barad S., Jona G., Levi D., Dym O., Reich Z. & Kapon R. (). gUMI-BEAR, a modular, unsupervised population barcoding method to track variants and evolution at high resolution.  PLoS ONE. 18:(6)e0286696.
Jiang W., Wang X. W., Unger T., Forgues M., Kim J. W., Hussain S. P., Bowman E., Spillare E. A., Lipsky M. M., Meck J. M., Cavalli L. R., Haddad B. R. & Harris C. C. (). Cooperation of tumor-derived HBx mutants and p53-249ser mutant in regulating cell proliferation, anchorage-independent growth and aneuploidy in a telomerase-immortalized normal human hepatocyte-derived cell line.  International Journal of Cancer. 127:(5)1011-1020.
Yagound B., Dogantzis K. A., Zayed A., Lim J., Broekhuyse P., Remnant E. J., Beekman M., Allsopp M. H., Aamidor S. E., Dim O., Buchmann G. & Oldroyd B. P. (). A Single Gene Causes Thelytokous Parthenogenesis, the Defining Feature of the Cape Honeybee Apis mellifera capensis.  Current Biology. 30:(12)2248-2259.
Shpilka T., Welter E., Borovsky N., Amar N., Shimron F., Peleg Y. & Elazar Z. (). Fatty acid synthase is preferentially degraded by autophagy upon nitrogen starvation in yeast.  Proceedings of the National Academy of Sciences of the United States of America. 112:(5)1434-1439.
Baron S., Peleg Y., Grunwald J., Morgenstern D., Elad N., Peretz M., Albeck S., Levin Y., Welch J. T., Deweerd K. A., Schwarz A., Burstein Y., Diskin R., Shakked Z. & Zimhony O. (). Expression of a recombinant, 4'-Phosphopantetheinylated, active M. tuberculosis fatty acid synthase I in E. coli.  PLoS ONE. (9)
Dym O., Aggarwal N., Ashani Y., Leader H., Albeck S., Unger T., Hamer-Rogotner S., Silman I., Tawfik D. S. & Sussman J. L. (). The impact of molecular variants, crystallization conditions and the space group on ligand-protein complexes: a case study on bacterial phosphotriesterase.  Acta Crystallographica Section D: Structural Biology. 79:(Pt 11)992-1009.
Li M., Greenblatt H. M., Dym O., Albeck S., Pais A., Gunanathan C., Milstein D., Degani H. & Sussman J. (). Structure of estradiol metal chelate and estrogen receptor complex: The basis for designing a new class of selective estrogen receptor modulators.  Journal of Medicinal Chemistry. 54:(10)3575-3580.
Cardenas P. D., Sonawane P. D., Heinig U., Jozwiak A., Panda S., Abebie B., Kazachkova Y., Pliner M., Unger T., Wolf D., Ofner I., Vilaprinyo E., Meir S., Davydov O., Gal-On A., Burdman S., Giri A., Zamir D., Scherf T., Szymanski J., Rogachev I. & Aharoni A. (). Pathways to defense metabolites and evading fruit bitterness in genus Solanum evolved through 2-oxoglutarate-dependent dioxygenases.  Nature Communications. 10.
Saikia C., Altman-Gueta H., Dym O., Karbat I. & Reuveny E. (). Conkunitzin-C2 from Conus consors induces an incomplete block of the Shaker K+ channel using a unique mode of action.  Biophysical Journal. 121:(3(1))500a-500a.
Gurfinkel N., Unger T., Givol D. & Mushinski J. F. (). Expression of the bcl‐2 gene in mouse B lymphocytic cell lines is differentiation stage specific.  European Journal of Immunology. 17:(4)567-570.
Dym O., Mevarech M. & Sussman J. L. (). Structural features that stabilize halophilic malate dehydrogenase from an archaebacterium.  Science. 267:(5202)1344-1346.
Reichmann D., Rahat O., Albeck S., Meged R., Dym O. & Schreiber G. (). The modular architecture of protein-protein binding interfaces.  Proceedings of the National Academy of Sciences of the United States of America. 102:(1)57-62.
Goldenzweig A., Goldsmith M., Hill S. E., Gertman O., Laurino P., Ashani Y., Dym O., Unger T., Albeck S., Prilusky J., Lieberman R. L., Aharoni A., Silman I., Sussman J., Tawfik D. & Fleishman S. J. (). Automated Structure- and Sequence-Based Design of Proteins for High Bacterial Expression and Stability.  Molecular Cell. 63:(2)337-346.
Heyne M., Shirian J., Cohen I., Peleg Y., Radisky E. S., Papo N. & Shifman J. M. (). Climbing Up and Down Binding Landscapes through Deep Mutational Scanning of Three Homologous Protein–Protein Complexes.  Journal of the American Chemical Society. 143:(41)17261-17275.
Albeck S. & Schreiber G. (). Biophysical characterization of the interaction of the β-lactamase TEM- 1 with its protein inhibitor BLIP.  Biochemistry. 38:(1)11-21.
Graslund S., Peleg Y., Albeck S., Unger T., Dym O., Prilusky J. & Sussman J. L. (). Protein production and purification.  Nature Methods. 5:(2)135-146.
Singh A., Erijman A., Noronha A., Kumar H., Peleg Y., Yarden Y. & Shifman J. M. (). Engineered variants of the Ras effector protein RASSF5 (NORE1A) promote anti-cancer activities in lung adenocarcinoma.  Journal of Biological Chemistry. 297:(6)
Vitu E., Kim S., Sevier C. S., Lutzky O., Heldman N., Bentzur M., Unger T., Yona M., Kaiser C. A. & Fass D. (). Oxidative activity of yeast Ero1p on protein disulfide isomerase and related oxidoreductases of the endoplasmic reticulum.  Journal of Biological Chemistry. 285:(24)18155-18165.
Wong E., Maretzky T., Peleg Y., Blobel C. P. & Sagi I. (). The functional maturation of a disintegrin and metalloproteinase (ADAM) 9, 10, and 17 requires processing at a newly identified proprotein convertase (PC) cleavage site.  The journal of Biological chemistry. 290:(19)12135-12146.
Sonawane P. D., Heinig U., Panda S., Gilboa N. S., Yona M., Kumar S. P., Alkan N., Unger T., Bocobza S., Pliner M., Malitsky S., Tkachev M., Meir S., Rogachev I. & Aharoni A. (). Short-chain dehydrogenase/reductase governs steroidal specialized metabolites structural diversity and toxicity in the genus Solanum.  Proceedings of the National Academy of Sciences of the United States of America. 115:(23)E5419-E5428.
RöThlisberger D., Khersonsky O., Wollacott A. M., Jiang L., Dechancie J., Betker J., Gallaher J. L., Althoff E. A., Zanghellini A., Dym O., Albeck S., Houk K. N., Tawfik D. S. & Baker D. (). Kemp elimination catalysts by computational enzyme design.  Nature. 453:(7192)190-195.
Khersonsky O., Goldsmith M., Zaretsky I., Hamer-Rogotner S., Dym O., Unger T., Yona M., Fridmann-Sirkis Y. & Fleishman S. J. (). Stable Mammalian Serum Albumins Designed for Bacterial Expression.  Journal of Molecular Biology. 435:(17)
Katzir N., Rechavi G., Cohen J., Unger T., Simoni F., Segal S., Cohen D. & Givol D. (). 'Retroposon' insertion into the cellular oncogene c-myc in canine transmissible venereal tumor.  Proceedings of the National Academy of Sciences of the United States of America. 82:(4)1054-1058.
Mohan V., Gaffney J. P., Solomonov I., Levin M., Klepfish M., Akbareian S., GrüNwald B., Dym O., Eisenstein M., Yu K. H., Kelsen D. P., KrüGer A., Edwards D. R. & Sagi I. (). Conformation-specific inhibitory anti-mmp-7 monoclonal antibody sensitizes pancreatic ductal adenocarcinoma cells to chemotherapeutic cell kill.  Cancers. 13:(7)
Xu Y., Li M., Greenblatt H., Chen W., Paz A., Dym O., Peleg Y., Chen T., Shen X., He J., Jiang H., Silman I. & Sussman J. (). Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations.  Acta Crystallographica Section D: Biological Crystallography. 68:(1)13-25.
Peleg Y., Vincentelli R., Collins B. M., Chen K., Livingstone E. K., Weeratunga S., Leneva N., Guo Q., Remans K., Perez K., Bjerga G. E., Larsen Ø., VaněK O., SkořEpa O., Jacquemin S., Poterszman A., Kjaer S., Christodoulou E., Albeck S., Dym O., Ainbinder E., Unger T., Schuetz A., Matthes S., Bader M., De Marco A., Storici P., Semrau M. S., Stolt-Bergner P., Aigner C., Suppmann S., Goldenzweig A. & Fleishman S. J. (). Community-Wide Experimental Evaluation of the PROSS Stability-Design Method.  Journal of Molecular Biology. 433:(13)
SchüTz A., Bernhard F., Berrow N., Buyel J. F., Ferreira-Da-Silva F., Haustraete J., Van Den Heuvel J., Hoffmann J. E., De Marco A., Peleg Y., Suppmann S., Unger T., Vanhoucke M., Witt S. & Remans K. (). A concise guide to choosing suitable gene expression systems for recombinant protein production.  STAR Protocols. 4:(4)
Chill J., Nivasch R., Levy R., Albeck S., Schreiber G. & Anglister J. (). The human interferon receptor: NMR-based modeling, mapping of the IFN-α2 binding site, and observed ligand-induced tightening.  Biochemistry. 41:(11)3575-3585.
Lapidoth G., Khersonsky O., Lipsh R., Dym O., Albeck S., Rogotner S. & Fleishman S. J. (). Highly active enzymes by automated combinatorial backbone assembly and sequence design.  Nature Communications. 9.
Gabizon R., Shraga A., Gehrtz P., Livnah E., Shorer Y., Gurwicz N., Avram L., Unger T., Aharoni H., Albeck S., Brandis A., Shulman Z., Katz B., Herishanu Y. & London N. (). Efficient targeted degradation via reversible and irreversible covalent PROTACs.  Journal of the American Chemical Society. 142:(27)11734-11742.
Goldsmith M., Barad S., Peleg Y., Albeck S., Dym O., Brandis A., Mehlman T. & Reich Z. (). The identification and characterization of an oxalyl-CoA synthetase from grass pea ( Lathyrus sativus L.).  RSC Chemical Biology. 3:(3)320-333.
Albeck S., Alzari P., Andreini C., Banci L., Berry I. M., Bertini I., Cambillau C., Canard B., Carter L., Cohen S. X., Diprose J. M., Dym O., Esnouf R. M., Felder C., Ferron F., Guillemot F., Hamer R., Ben Jelloul J. M., Laskowski R. A., Laurent T., Longhi S., Lopez R., Luchinat C., Malet H., Mochel T., Morris R. J., Moulinier L., Oinn T., Pajon A., Peleg Y., Perrakis A., Poch O., Prilusky J., Rachedi A., Ripp R., Rosato A., Silman I., Stuart D. I., Sussman J., Thierry J. -., Thompson J. D., Thornton J. M., Unger T., Vaughan B., Vranken W., Watson J. D., Whamond G. & Henrick K. (). SPINE bioinformatics and data-management aspects of high-throughput structural biology.  Acta Crystallographica Section D-Structural Biology. 62:(10)1184-1195.
Grossman M., Tworowski D., Dym O., Lee M., Levy Y., Murphy G. & Sagi I. (). The intrinsic protein flexibility of endogenous protease inhibitor TIMP-1 controls its binding interface and affects its function.  Biochemistry. 49:(29)6184-6192.
Sberro H., Leavitt A., Kiro R., Koh E., Peleg Y., Qimron U. & Sorek R. (). Discovery of Functional Toxin/Antitoxin Systems in Bacteria by Shotgun Cloning.  Molecular Cell. 50:(1)136-148.
Khersonsky O., Kiss G., RöThlisberger D., Dym O., Albeck S., Houk K. N., Baker D. & Tawfik D. S. (). Bridging the gaps in design methodologies by evolutionary optimization of the stability and proficiency of designed Kemp eliminase KE59.  Proceedings of the National Academy of Sciences of the United States of America. 109:(26)10358-10363.
Yifrach E., Holbrook‐Smith D., BüRgi J., Othman A., Eisenstein M., Roermund C. W., Visser W., Tirosh A., Rudowitz M., Bibi C., Galor S., Weill U., Fadel A., Peleg Y., Erdmann R., Waterham H. R., Wanders R. J. A., Wilmanns M., Zamboni N., Schuldiner M. & Zalckvar E. (). Systematic multi‐level analysis of an organelle proteome reveals new peroxisomal functions.  Molecular Systems Biology. 18:(9)
Zimhony O., Schwarz A., Raitses-Gurevich M., Peleg Y., Dym O., Albeck S., Burstein Y. & Shakked Z. (). AcpM, the meromycolate extension Acyl carrier protein of mycobacterium tuberculosis, is activated by the 4′-phosphopantetheinyl transferase PptT, a potential target of the multistep mycolic acid biosynthesis.  Biochemistry. 54:(14)2360-2371.
Davidi D., Shamshoum M., Guo Z., Bar‐On Y. M., Prywes N., Oz A., Jablonska J., Flamholz A., Wernick D. G., Antonovsky N., Pins B., Shachar L., Hochhauser D., Peleg Y., Albeck S., Sharon I., Mueller‐Cajar O. & Milo R. (). Highly active rubiscos discovered by systematic interrogation of natural sequence diversity.  The EMBO Journal. 39:(18)
Adams E. M., Pezzotti S., Ahlers J., RüTtermann M., Levin M., Goldenzweig A., Peleg Y., Fleishman S. J., Sagi I. & Havenith M. (). Local Mutations Can Serve as a Game Changer for Global Protein Solvent Interaction.  JACS Au. 1:(7)1076-1085.
Frenkiel-Krispin D., Wolf S. G., Albeck S., Unger T., Peleg Y., Jacobovitch J., Michael Y., Daube S., Sharon M., Robinson C. V., Svergun D. I., Fass D., Tzfira T. & Elbaum M. (). Plant transformation by Agrobacterium tumefaciens: Modulation of single-stranded DNA-VirE2 complex assembly by VirE.  Journal of Biological Chemistry. 282:(6)3458-3464.
Aricescu A. R., Assenberg R., Bill R. M., Busso D., Chang V. T., Davis S. J., Dubrovsky A., Gustafsson L., Hedfalk K., Heinemann U., Jones I. M., Ksiazek D., Lang C., Maskos K., Messerschmidt A., Macieira S., Peleg Y., Perrakis A., Poterszman A., Schneider G., Sixma T. K., Sussman J., Sutton G., Tarboureich N., Zeev-Ben-Mordehai T. & Jones E. Y. (). Eukaryotic expression: Developments for structural proteomics.  Acta Crystallographica Section D: Biological Crystallography. 62:(10)1114-1124.
Wong E., Cohen T., Romi E., Levin M., Peleg Y., Arad U., Yaron A., Milla M. E. & Sagi I. (). Harnessing the natural inhibitory domain to control TNF alpha Converting Enzyme (TACE) activity in vivo.  Scientific Reports. 6.
Arfi Y., Shamshoum M., Rogachev I., Peleg Y. & Bayer E. (). Integration of bacterial lytic polysaccharide monooxygenases into designer cellulosomes promotes enhanced cellulose degradation.  Proceedings of the National Academy of Sciences of the United States of America. 111:(25)9109-9114.
Peleg Y., Prabahar V., Bednarczyk D. & Unger T. (). Harnessing the Profinity eXact™ System for Expression and Purification of Heterologous Proteins in E. coli.  . 33-43.
Siton O., Ideses Y., Albeck S., Unger T., Bershadsky A. D., Gov N. S. & Bernheim-Groswasser A. (). Cortactin releases the brakes in actin- based motility by enhancing WASP-VCA detachment from Arp2/3 branches.  Current Biology. 21:(24)2092-2097.
Smock R. G., Yadid I., Dym O., Clarke J. & Tawfik D. (). De Novo Evolutionary Emergence of a Symmetrical Protein Is Shaped by Folding Constraints.  Cell. 164:(3)476-486.
Israeli H., Degtjarik O., Fierro F., Chunilal V., Gill A. K., Roth N. J., Botta J., Prabahar V., Peleg Y., Chan L. F., Ben-Zvi D., Mccormick P. J., Niv M. Y. & Shalev-Benami M. (). Structure reveals the activation mechanism of the MC4 receptor to initiate satiation signaling.  Science (American Association for the Advancement of Science). 372:(6544)808-814.
Oranges M., Giannoulis A., Vanyushkina A., Sirkis Y. F., Dalaloyan A., Unger T., Su X. C., Sharon M. & Goldfarb D. (). C-terminal domain dimerization in yeast Hsp90 is moderately modulated by the other domains.  Biophysical Journal.
Cohen S., Albeck S., Ben-Dov E., Cahan R., Firer M., Zaritsky A. & Dym O. (). Cyt1Aa toxin: Crystal structure reveals implications for its membrane-perforating function.  Journal of Molecular Biology. 413:(4)804-814.
Ganor Y., Besser M., Ben-Zakay N., Unger T. & Levite M. (). Human T cells express a functional ionotropic glutamate receptor GluR3, and glutamate by itself triggers integrin-mediated adhesion to laminin and fibronectin and chemotactic migration.  Journal of Immunology. 170:(8)4362-4372.
Unger T., Jacobovitch Y., Dantes A., Bernheim R. & Peleg Y. (). Applications of the Restriction Free (RF) cloning procedure for molecular manipulations and protein expression.  Journal of Structural Biology. 172:(1)34-44.
Bandyopadhyay B. & Peleg Y. (). Application of Restriction Free (RF) Cloning in Circular Permutation.  . 149-163.
Albeck S., Burstein Y., Dym O., Jacobovitch Y., Levi N., Meged R., Michael Y., Peleg Y., Prilusky J., Schreiber G., Silman I., Unger T. & Sussman J. (). Three-dimensional structure determination of proteins related to human health in their functional context at the Israel Structural Proteomics Center (ISPC).  Acta Crystallographica Section D: Biological Crystallography. 61:(10)1364-1372.
Udi Y., Grossman M., Solomonov I., Dym O., Rozenberg H., Moreno V., Cuniasse P., Dive V., Arroyo A. G. & Sagi I. (). Inhibition mechanism of membrane metalloprotease by an exosite-swiveling conformational antibody.  Structure. 23:(1)104-115.
Selzer T., Albeck S. & Schreiber G. (). Rational design of faster associating and tighter binding protein complexes.  Nature Structural Biology. 7:(7)537-541.
Falini G., Albeck S., Weiner S. & Addadi L. (). Control of aragonite or calcite polymorphism by mollusk shell macromolecules.  Science. 271:(5245)67-69.
Franz F., Tapia-Rojo R., Winograd-Katz S., Boujemaa-Paterski R., Li W., Unger T., Albeck S., Aponte-Santamaria C., Garcia-Manyes S., Medalia O., Geiger B. & GräTer F. (). Allosteric activation of vinculin by talin.  Nature Communications. 14:(1)
Nissinkorn Y., Lahav-Mankovski N., Rabinkov A., Albeck S., Motiei L. & Margulies D. (). Sensing Protein Surfaces with Targeted Fluorescent Receptors.  Chemistry (Weinheim an der Bergstrasse, Germany). 21:(45)15981-15987.
Erijman A., Dantes A., Bernheim R., Shifman J. M. & Peleg Y. (). Transfer-PCR (TPCR): A highway for DNA cloning and protein engineering.  Journal of Structural Biology. 175:(2)171-177.
KolářOvá L., ZahradníK J., HuličIak M., Mikulecký P., Peleg Y., Shemesh M., Schreiber G. & Schneider B. (). De novo developed protein binders mimicking Interferon lambda signaling.  The FEBS journal. 289:(9)2672-2684.
Mock B., Givol D., Dhoostelaere L., Huppi K., Seldin M., Gurfinkel N., Unger T., Potter M. & Mushinski J. (). Mapping of the bcl-2 oncogene on mouse chromosome 1.  Cytogenetics and Cell Genetics. 47:(1-2)11-15.
Yosef E., Katz A., Peleg Y., Mehlman T. & Karlish S. J. (). Do Src kinase and caveolin interact directly with Na,K-ATPase?.  Journal of Biological Chemistry. 291:(22)11736-11750.
Mishra N. K., Habeck M., Kirchner C., Haviv H., Peleg Y., Eisenstein M., Apell H. J. & Karlish S. J. D. (). Molecular Mechanisms and Kinetic Effects of FXYD1 and Phosphomimetic Mutants on Purified Human Na,K-ATPase.  Journal of Biological Chemistry. 290:(48)28746-28759.
Bednarczyk D., Dym O., Prabahar V., Peleg Y., Pike D. H. & Noy D. (). Fine Tuning of Chlorophyll Spectra by Protein-Induced Ring Deformation.  Angewandte Chemie-International Edition. 55:(24)6901-6905.
Seal M., Jash C., Jacob R., Feintuch A., Harel Y., Albeck S., Unger T. & Goldfarb D. (). Evolution of CPEB4 Dynamics Across its Liquid–Liquid Phase Separation Transition.  The Journal of Physical Chemistry B. 125:(47)12947-12957.
Manicka S., Peleg Y., Unger T., Albeck S., Dym O., Greenblatt H. A., Bourenkov G., Lamzin V., Krishnaswamy S. & Sussman J. (). Crystal structure of YagE, a putative DHDPS-like protein from Escherichia coli K12.  Proteins-Structure Function And Bioinformatics. 71:(4)2102-2108.
Yadid I., Kirshenbaum N., Sharon M., Dym O. & Tawfik D. (). Metamorphic proteins mediate evolutionary transitions of structure.  Proceedings of the National Academy of Sciences of the United States of America. 107:(16)7287-7292.
Tarayrah-Ibraheim L., Maurice E. C., Hadary G., Ben-Hur S., Kolpakova A., Braun T., Peleg Y., Yacobi-Sharon K. & Arama E. (). DNase II mediates a parthanatos-like developmental cell death pathway in Drosophila primordial germ cells.  Nature Communications. 12:(1)
Aizenberg J., Albeck S., Weiner S. & Addadi L. (). Crystal-protein interactions studied by overgrowth of calcite on biogenic skeletal elements.  Journal of Crystal Growth. 142:(1-2)156-164.
Cohen S., Dym O., Albeck S., Ben-Dov E., Cahan R., Firer M. & Zaritsky A. (). High-Resolution Crystal Structure of Activated Cyt2Ba Monomer from Bacillus thuringiensis subsp. israelensis.  Journal of Molecular Biology. 380:(5)820-827.
Levi Y., Albeck S., Brack A., Weiner S. & Addadi L. (). Control over aragonite crystal nucleation and growth: An in vitro study of biomineralization.  Chemistry-A European Journal. 4:(3)389-396.
Pode Z., Peri-Naor R., Georgeson J. M., Ilani T., Kiss V., Unger T., Markus B., Barr H. M., Motiei L. & Margulies D. (). Protein recognition by a pattern-generating fluorescent molecular probe.  Nature Nanotechnology. 12:(12)1161-1168.
Yifrach E., Rudowitz M., Cruz-Zaragoza L. D., Tirosh A., Gazi Z., Peleg Y., Kunze M., Eisenstein M., Schliebs W., Schuldiner M., Erdmann R. & Zalckvar E. (). Determining the targeting specificity of the selective peroxisomal targeting factor Pex9.  Biological Chemistry. 404:(2-3)121-133.
Alzari P. M., Berglund H., Berrow N. S., Blagova E., Busso D., Cambillau C., Campanacci V., Christodoulou E., Eiler S., Fogg M. J., Folkers G., Geerlof A., Hart D., Haouz A., Herman M. D., Macieira S., Nordlund P., Perrakis A., Quevillon-Cheruel S., Tarandeau F., Van Tilbeurgh H., Unger T., Luna-Vargas M., Velarde M., Willmanns M. & Owens R. J. (). Implementation of semi-automated cloning and prokaryotic expression screening: The impact of SPINE.  Acta Crystallographica Section D: Biological Crystallography. 62:(10)1103-1113.
Reichmann D., Cohen M., Abramovich R., Dym O., Lim D., Strynadka N. C. J. & Schreiber G. (). Binding Hot Spots in the TEM1-BLIP Interface in Light of its Modular Architecture.  Journal of Molecular Biology. 365:(3)663-679.
Khersonsky O., Roethlisberger D., Wollacott A. M., Murphy P., Dym O., Albeck S., Kiss G., Houk K. N., Baker D. & Tawfik D. (). Optimization of the In-Silico-Designed Kemp Eliminase KE70 by Computational Design and Directed Evolution.  Journal of Molecular Biology. 407:(3)391-412.
Shaaltiel Y., Bartfeld D., Hashmueli S., Baum G., Brill-Almon E., Galili G., Dym O., Boldin-Adamsky S. A., Silman I., Sussman J., Futerman A. H. & Aviezer D. (). Production of glucocerebrosidase with terminal mannose glycans for enzyme replacement therapy of Gaucher's disease using a plant cell system.  Plant Biotechnology Journal. 5:(5)579-590.
Shemi A., Ben-Dor S., Rotkopf R., Dym O. & Vardi A. (). Phylogeny and biogeography of the algal DMS-releasing enzyme in the global ocean.  ISME Communications. 3.
Bab-Dinitz E., Albeck S., Peleg Y., Brumfeld V., Gottschalk K. E. & Karlish S. J. (). A C-terminal lobe of the β subunit of Na,K-ATPase and H,K-ATPase resembles cell adhesion molecules.  Biochemistry. 48:(36)8684-8691.
Kahlon S., Shreibman D., Unger T., Ben-Yehuda D. & Elias S. (). The oncogenic fusion protein CBFB-SMMHC downregulates CD48 to evade NK cell recognition.  Blood Cancer Journal. 8.
Allouche-Arnon H., Khersonsky O., Tirukoti N. D., Peleg Y., Dym O., Albeck S., Brandis A., Mehlman T., Avram L., Harris T., Yadav N. N., Fleishman S. J. & Bar-Shir A. (). Computationally designed dual-color MRI reporters for noninvasive imaging of transgene expression.  Nature biotechnology. 40:(7)1143-1149.
Peleg Y. & Unger T. (). Application of the Restriction-Free (RF) cloning for multicomponents assembly.  . 73-87.
Berrow N. S., Buessow K., Coutard B., Diprose J., Ekberg M., Folkers G. E., Levy N., Lieu V., Owens R. J., Peleg Y., Pinaglia C., Quevillon-Cheruel S., Salim L., Scheich C., Vincentelli R. & Busso D. (). Recombinant protein expression and solubility screening in Escherichia coli: A comparative study.  Acta Crystallographica Section D: Biological Crystallography. 62:(10)1218-1226.
Albeck S., Unger R. & Schreiber G. (). Evaluation of direct and cooperative contributions towards the strength of buried hydrogen bonds and salt bridges.  Journal of Molecular Biology. 298:(3)503-520.
Baran D., Pszolla M. G., Lapidoth G. D., Norn C., Dym O., Unger T., Albeck S., Tyka M. D. & Fleishman S. J. (). Principles for computational design of binding antibodies.  Proceedings of the National Academy of Sciences of the United States of America. 114:(41)10900-10905.
Giannoulis A., Feintuch A., Unger T., Amir S. & Goldfarb D. (). Monitoring the Conformation of the Sba1/Hsp90 Complex in the Presence of Nucleotides with Mn(II)-Based Double Electron–Electron Resonance.  The journal of physical chemistry letters. 12:(51)12235-12241.
Cohen J., Unger T., Rechavi G., Canaani E. & Givol D. (). Rearrangement of the oncogene c-mos in mouse myeloma NSI and hybridomas.  Nature. 306:(5945)797-799.
Krieg E., Albeck S., Weissman H., Shimoni E. & Rybtchinski B. (). Separation, Immobilization, and Biocatalytic Utilization of Proteins by a Supramolecular Membrane.  PLoS ONE. 8:(5)
Saikia C., Dym O., Altman-Gueta H., Gordon D., Reuveny E. & Karbat I. (). A Molecular Lid Mechanism of K+ Channel Blocker Action Revealed by a Cone Peptide.  Journal of Molecular Biology. 433:(17)
Sen S., Bhowmik P., Tiwari S., Peleg Y. & Bandyopadhyay B. (). Versatility of reverse transcriptase loop-mediated isothermal amplification (RT-LAMP) from diagnosis of early pathological infection to mutation detection in organisms.  Molecular Biology Reports. 51:(1)
Mishra N. K., Peleg Y., Cirri E., Belogus T., Lifshitz Y., Voelker D. R., Apell H., Garty H. & Karlish S. J. (). FXYD proteins stabilize Na,K-ATpase: Amplification of specific phosphatidylserine-protein interactions.  Journal of Biological Chemistry. 286:(11)9699-9712.