• Physics Core Facilities
  • Physics of Complex Systems
  • Condensed Matter Physics
  • Particle Physics and Astrophysics
  • SRITP
  • Seminars
    Date:
    04
    January, 2026
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Emergence of information in molecular systems

    Dr. Sabina Winograd-Katz   |   

    Lunch at 12:45

    Likely pathways from the inanimate to the animate world involve a transition that can be thought of as the emergence of information in molecular systems. Before this transition, heteropolymers already exist, but the sequence information of a polymer does not persist beyond the lifetime of the polymer. During the transition, information becomes a separate dynamical entity, which lives and changes over longer timescales than its carrier molecules. This transition does not necessarily require the existence of a full-fledged replication machinery, such as polymerase enzymes that copy informational polymers. Instead, the interplay of simpler reactions can create strong correlations in pools of informational polymers, which can also decouple the timescales of the informational dynamics from those of the polymer dynamics. This interplay is only beginning to be studied, experimentally as well as computationally and theoretically, such that many conceptual and methodological questions are currently open. The aim of my talk is to introduce these questions and present some results, which help to make them more concrete. 

  • Colloquia
    Date:
    01
    January, 2026
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    Water on the Moon

    Weissman Auditorium
    Prof. Oded Aharonson

    Lunar volatiles, especially water, hold the key to sustaining long-term human presence on the Moon and beyond. I will cover the latest discoveries in volatile stability, distribution, sources, and transport. Due to the Moon's monotonic decrease in spin axis obliquity, perennially shadowed regions near the poles have shrunk with time.   Thus, comparing the observations against theoretical models affords the opportunity to constrain the history of ice accumulation in these regions.  These constraints offer both fundamental insights and practical value.

     

  • Seminars
    Date:
    30
    December, 2025
    Tuesday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    The Physics of Learnable Data

    Dr. Noam Itzhak Levi   |   

    LUNCH AT 12:45

    The power of physics lies in its ability to use simple models to predict the behavior of highly complex systems — allowing us to ignore microscopic details or, conversely, to explain macroscopic phenomena through minimal constituents. In this seminar, I will explore how these physical principles of universality and reductionism extend beyond the natural universe to the space of generative models and natural data.

    I will begin by discussing major open problems in modern machine learning where a physics perspective is particularly impactful. Focusing on the role of data in the learning process, I will first examine the "Gaussian" approximation of real-world datasets, which is widely used in theoretical calculations. I will then argue that truly understanding generative models (such as diffusion and language models) requires characterizing the non-trivial latent structure of their training data, shifting the problem from networks to data.

    I will present a simple yet predictive hierarchical generative model of data, and demonstrate how this hierarchical structure can be probed using diffusion models and observables drawn from statistical physics. Finally, I will discuss future prospects, connecting hierarchical compositionality to semantic structures in natural language and looking beyond the diffusion paradigm.

  • Seminars
    Date:
    28
    December, 2025
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Anticipatory and Responsive Regulation of Blood Glucose Levels

    Dr. Danny Ben-Zvi   |   

    Lunch at 12:45

    Glucose can enter the blood following a meal, and/or can be produced by the liver and kidneys at times of need such as fasting. An elevation in blood glucose beyond steady state levels leads to secretion of the hormone insulin, leading to increase in glucose uptake into muscle and adipose tissues. Diabetes Mellitus arises when insufficient levels of insulin are secreted into the blood, manifesting as a chronic elevation in blood glucose levels. A reduction in glucose levels can lead to secretion of a large number of hormones, such as glucagon, cortisol and adrenaline, which cause endogenous glucose production and secretion into the blood,  maintaining homeostasis of glucose levels. 

    In this talk we will use mathematical modeling and biochemical measurements to study the dynamics of hormone secretion in healthy individuals and Diabetes patients, and (hopefully) provide an answer to a key question: does the "body" measure glucose levels and regulates glucose levels accordingly by secreting insulin/glucose, as expected by a standard negative feedback system, or does it estimate future glucose levels and secretes hormones/glucose in a feedforward mechanism?

    Students interested in meeting the speaker after the seminar may sign up here:

    LINK

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.bio

  • Colloquia
    Date:
    25
    December, 2025
    Thursday
    Hour: 12:30-14:00

    Special Physics Colloquium

    Is there turbulence in the deep ocean?

    Physics Weissman Auditorium

    Short answer: Yes. One might imagine the deep ocean as a dark, silent world, largely untouched by the restless motion seen at the surface, where winds raise waves and storms stir the sea. However, just as surface waves exist along the sharp density interface between the ocean and the atmosphere, internal waves are supported by smooth vertical gradients in density far beneath the ocean's surface. The turbulence of these waves plays a central role in ocean mixing and circulation.
    I will introduce surface and internal waves as examples of dispersive wave systems, and explain how their long-time dynamics can be described using the theory of weak wave turbulence. I will then present our recent work, which addresses a long-standing problem in geophysical fluid dynamics: deriving the observed broadband oceanic spectrum of internal waves, known as the Garrett-Munk spectrum, directly from the governing equations.
    The central message of the talk is that the weak-rotation limit is singular, and that it is precisely this singular limit that allows the oceanic spectrum to emerge from first principles.
    No background in geophysical fluid dynamics will be assumed.

  • Colloquia
    Date:
    18
    December, 2025
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    The quest for the Nonlinear Breit-Wheeler Pair Production Measurement

    Weissman Auditorium
    Dr. Noam Tal-Hod

    The nonlinear Breit-Wheeler process — electron-positron pair creation from high-energy photons in an intense electromagnetic field — is one of the most fundamental yet experimentally elusive predictions of strong-field quantum electrodynamics. Reaching the regime where this process becomes measurable requires not only extreme light-matter interaction conditions, but also detecting technologies capable of resolving rare signatures amid complex backgrounds. Beyond its intrinsic importance for testing quantum electrodynamics in the strongest fields accessible on Earth, this process is also relevant for understanding environments such as magnetars, where similarly intense fields and abundant pair production naturally occur. I will present the ongoing international effort to realize a definitive measurement of the process and highlight how advanced particle-tracking methods, commonly used in High-Energy Physics experiments, are contributing to this goal. I will discuss the running E320 experiment at SLAC, where our tracking detector is used to characterize collisions of 10 GeV electrons and 10 TW laser pulses in unprecedented detail, and give an outlook on the upcoming LUXE experiment at DESY, which aims to operate at the intensity frontier. I will also describe new opportunities at high-power multi-PW laser facilities — including our recent all-laser campaigns at ELI-NP and APOLLON — that open complementary routes to probe strong-field physics in complementary parameter spaces. Together, these efforts bring accelerator-based, laser-based and particle physics approaches closer to a definitive measurement of the nonlinear Breit-Wheeler process.

  • Seminars
    Date:
    14
    December, 2025
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Self-organized hyperuniformity in population dynamics

    Dr. Tal Agranov   |   

    Lunch at 12:45

    Living systems often operate at critical states – poised on the border between two distinct dynamical behaviours, where unique functionality emerges [1]. A striking example is the ear’s sensory hair cells, which amplify faint sounds by operating on the verge of spontaneous oscillations [2]. How such finely tuned states are maintained, and what statistical signatures characterise them, remain major open questions.

    In this talk, I will present a generic mechanism for critical tuning in population dynamics [3]. In our model, the consumption of a shared resource drives the population towards a critical steady state characterised by prolonged individual lifetimes. Remarkably, we find that in its spatially extended form, the model exhibits hyperuniform density correlations. In contrast to previously studied hyperuniform systems, our model lacks conservation laws even arbitrarily close to criticality. Through explicit coarse-graining, we derive a hydrodynamic theory that clarifies the underlying mechanism for this striking statistical behaviour. 

    I will highlight several biological contexts in which this mechanism is expected to operate, including biomolecular complex assembly in the developing C. elegans embryo. Here, together with experimental collaborators, we identify signatures of critical tuning that may arise from resource competition.

    More broadly, our framework motivates future work on how living systems harness resource-mediated interactions to regulate their dynamical states.

    [1] T. Mora, W. Bialek, J Stat Phys (2011)

    [2] S. Camalet, T. Duke, F. Jülicher and J. Prost, PNAS (1999)

    [3] T Agranov, N. Wiegenfeld,O. Karin and B. D. Simons arXiv:2509.08077 (2025)

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.bio

  • Colloquia
    Date:
    11
    December, 2025
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    Quantum Vortices of Photons

    Weissman Auditorium
    Prof. Ofer Firstenberg

    In optics, vortices appear as phase twists of the electromagnetic field, traditionally arising from interactions between light and matter. Our lab investigates an extreme regime of optical nonlinearity in which quantum vortices arise from strong, effective interactions between individual photons. We observe extended phase singularities in the few-photon wavefunction, including vortex lines and rings, and explore their symmetry and topology. The vortex rings become warped by the underlying dispersion, and the enclosed phase flip provides a resource for deterministic quantum logic. In recent experiments moving beyond co-propagating geometries, we find that counter-propagating photons exhibit longer-range and richer vortex interactions, opening new avenues for quantum nonlinear optics.

  • Seminars
    Date:
    09
    December, 2025
    Tuesday
    Hour: 13:15-14:30

    Special Seminar -The Clore Center for Biological Physics

    Nonreciprocal phases of matter

    Dr. Yael Avni   |   

    Lunch at 12:45

    Nonreciprocal interactions in which the influence of A on B differs from that of B on A are abundant in physical, chemical, biological, and ecological systems, and are known to give rise to oscillatory states. Yet, it remains unclear whether these states represent true phases of matter: Can they maintain long-range order in spatially extended, noisy environments in the thermodynamic limit? And what kinds of phase transitions do they exhibit? To address these questions, we introduce a minimal generalization of the Ising model with two species having opposing goals. We demonstrate that oscillatory phases are stable in three dimensions but not in two, and that nonreciprocity changes the critical exponents from those of the Ising model to those of the XY model. We further extend this framework to a nonreciprocal XY model and develop a Harris-like criterion that determines when nonreciprocity fundamentally alters universal behavior. Finally, we apply these insights to a recent model of biomolecular condensates, predicting exotic dynamical phases and suggesting experimental tests.

  • Seminars
    Date:
    07
    December, 2025
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Collective effects and Curie principle in biological cells: experiments and theory

    Dr. Daniel Riveline   |   

    LUNCH AT 12:45

    Cells, tissues and organs can rotate spontaneously in vivo and in vitro. These motions are remarkable for their robustness and for their potential functions. However, physical mechanisms coordinating these dynamics are poorly understood. Active matter formalisms are required to understand these out-of-equilibrium phenomena with quantitative comparisons between theory and experiments.

    I will present two examples of spontaneous rotation with experiments synergized with theory (1, 2). In a first study (1), we report that rings of epithelial cells can undergo spontaneous rotation below a threshold perimeter. We demonstrate that the tug-of-war between cell polarities together with the ring boundaries determine the onset to coherent motion. The principal features of these dynamics are recapitulated with a numerical simulation (Vicsek model). In a second study (2), we show that cell doublets rotate in a 3D matrix and we identify mesoscopic structures leading the movement. Our theoretical framework integrates consistently cell polarity, cell motion, and interface deformation with equations capturing the physics of cortical cell layers. We also report that the Curie principle is verified in these cellular doublets with its symmetry relations between causes and effects. Altogether both examples could set generic rules to quantify and predict generic motion of tissues and organs as well as active synthetic materials.

    1- S. Lo Vecchio et al. Nature Physics 20:322–331(2024).

    2- L. Lu et al. Nature Physics 20:1194–1203 (2024).

  • Colloquia
    Date:
    04
    December, 2025
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    Subradiance in arrays of atoms coupled to photons

    Physics Weissman Auditorium
    Dr. Alexander Poddubny

    The study of photon interactions with arrays of atoms is a mature field, going back at least as far as Dicke's discovery of superradiance in 1954. The main idea is that a photon mode can couple to multiple distant atoms simultaneously, and these multiple couplings can interfere either constructively (leading to faster emission, known as superradiance) or destructively (leading to slower emission, referred to as subradiance). However, there is a lot of unexplored and experimentally accessible physics beyond the simple Dicke-type models.  This is especially evident for subradiant states with multiple excitations, which explore the exponential degeneracy of the Hilbert space.

    In this talk, I will summarize our latest results on multiple-excited subradiant states in arrays of atoms coupled to photons propagating in a waveguide. I will discuss the limits for subradiance in a strongly excited system in the presence of interactions.

     

  • Seminars
    Date:
    30
    November, 2025
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Intramolecular structural heterogeneity in intrinsically disordered proteins

    Prof. Beck- Barkai   |   

    lunch at 12:45

     

    Intrinsically disordered proteins (IDPs) and disordered protein regions, which comprise over 40% of the eukaryotic proteome, exhibit complex dynamics, fluctuating between diverse conformational ensembles. Unlike structured proteins, where short-range interactions and long-range contacts dictate singular three-dimensional folding, IDPs lack a single stable structure. To understand their biological function, it is crucial to establish a correlation between the amino acid sequence and the statistical properties of their structural ensemble.

    In this talk, I will present our recent work on neurofilament proteins, which are essential neuronal-specific cytoskeletal components containing large intrinsically disordered domains. Our study spans multiple length scales—from nanoscopic to macroscopic—aiming to uncover the molecular mechanisms underlying their functional behavior. By leveraging coarse-grained polymer physics models and integrating minimal parameters, we demonstrate that the structural ensemble of neurofilament proteins can be reasonably predicted. However, our findings underscore that specific sequence motifs and the surrounding context are necessary to fully capture the protein’s conformational landscape in solution.

    These results highlight the power of advanced polymer theories in describing the ensemble behavior of IDPs, offering a promising avenue for modeling their function and dysfunction, particularly in neurodegenerative disease contexts. By bridging the gap between sequence specificity and polymer physics, we aim to establish a more comprehensive framework for predicting IDP behavior and its implications in health and disease.

  • Colloquia
    Date:
    27
    November, 2025
    Thursday
    Hour: 11:15-12:15

    Physics Colloquium

    When single anyons meet a beam splitter

    Weissman Auditorium
    Prof. Heung-Sun Sim

    Anyons are quasiparticles not belonging to the two classes of elementary particles, bosons and fermions. They obey Abelian or non-Abelian braiding statistics. There have been experimental evidences [1,2] of braiding of Abelian anyons in low-temperature submicron devices having one-dimensional (1D) chiral edge channels and beam splitters (quantum point contacts) in the fractional quantum Hall regime. I will talk about scattering effects that happen when diluted single anyons approach a beam splitter along a chiral 1D channel. The effects include time-domain braiding of anyons [3-5,1], anyon exclusion [6], and extension [7] of the notion of braiding to effective (1+1)D interacting systems (such as exotic Kondo systems) in the absence of topological order (e.g., in the absence of fractional quantum Hall states).  

     

    [1] H. Bartolomei et al., Science 368, 173 (2020).

    [2] J. Nakamura, S. Liang, G. C. Gardner, and M. J. Manfra, Nat. Phys. 16, 931 (2020).

    [3] J.-Y. M. Lee, C. Hong, T. Alkalay, N. Schiller, V. Umansky, M. Heiblum, Y. Oreg, and H.-S. Sim, Nature 617, 277 (2023).

    [4] B. Lee, C. Han, and H.-S. Sim, Phys. Rev. Lett. 123, 016803 (2019).

    [5] J.-Y. M. Lee and H.-S. Sim, Nature Communications 13, 6660 (2022).

    [6] K. Kim, J.-Y. M. Lee, and H.-S. Sim, preprint; M. Oh, K. Kim, J. Park, and H.-S. Sim, in progress

    [7] J.-Y. M. Lee, D. Kim, and H.-S. Sim, preprint.

  • Seminars
    Date:
    23
    November, 2025
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Hamiltonian hydrodynamics of 2D active matter

    Dr. Naomi Oppenheimer   |   

    Lunch at 12:45

    I will describe two biologically inspired systems that can be analyzed using the same hydrodynamic Hamiltonian formalism. The first is ATP synthase proteins, which rotate in a biological membrane. The second is swimming micro-organisms such as bacteria or algae confined to a two-dimensional film. I will show that in both cases, the active systems self-assemble into distinct structural states --- the rotating proteins rearrange into a hexagonal lattice, whereas the micro-swimmers evolve into a zig-zag configuration with a particular tilt. While the two systems differ both on the microscopic, local interaction, as well as the emerging, global structure, their dynamics originate from similar geometrical conservation laws applicable to a broad class of fluid flows. I will present experiments and simulations in which the Hamiltonian is perturbed, leading to different and surprising steady-state configurations. Time permitting, I will show that higher-order force distributions lead to the aggregation of an ensemble of particles.

  • Colloquia
    Date:
    20
    November, 2025
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    Dark matter detectors: WIMPs and other creatures

    Weissman Auditorium
    Prof. Ranny Budnik

    Direct detection searches for dark matter have advanced remarkably over the past decades, with experimental sensitivities improving by an order of magnitude every few years. This rapid progress has not only expanded the explored dark matter parameter space but also enabled measurements and observations of "standard" physics that were considered out of reach until recently.

    In this talk, I will present an overview of the XENONnT experiment, highlighting its latest results on dark matter and more, and will take a glance at the future of large-scale WIMP detectors. I will then discuss several new directions in the search for light dark matter and other emerging detector concepts that are now moving from ideas to experimental design.

  • Seminars
    Date:
    16
    November, 2025
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    The infant gut microbiome - from computational tools to the bench and back

    Prof. Moran Yassour   |   

    lunch at 12:45

    The development of the infant gut microbiome is primarily influenced by delivery mode (vaginal or C-section) and the infant feeding type, with breast milk serving as the optimal source of nutrition. Breast milk contains human milk oligosaccharides (HMOs) that act as nourishment for the developing gut microbiome, potentially conferring advantages to specific bacterial species. Previous studies have demonstrated the ability of certain Bifidobacterium species to utilize individual HMOs, yet it is unclear whether the HMO composition impacts the gut bacteria community. 

    In this seminar I will introduce the field of the gut microbiome and infant gut specifically, I will dig deeper into bacteria from the Bifidobacterium genus and their ability to utilize HMOs. From computational tool development to estimate their abundance, and our identification of a novel subspecies in the infant gut, to the experimental follow-ups of validation and examining the functional potential of the bacteria. 

     "No previous knowledge of the field is needed, just a critical and open mind."

    Students interested in meeting the speaker after the seminar may sign up here:

    LINK

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.bio

  • Colloquia
    Date:
    13
    November, 2025
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    2D van der Waals superconducting devices for science and technology

    Physics Weissman Auditorium
    Prof. Mandar M. Deshmukh

    Over the last decade, the development of Josephson devices based on van der Waals (vdW) materials has advanced rapidly, representing a paradigm shift driven by the advent of 2D materials. The diverse vdW materials library, combined with advanced fabrication techniques, enables the integration of materials with vastly disparate properties for scientific exploration. vdW Josephson junctions (JJs) offer a unique route to explore novel functionalities and associated physics that remain inaccessible in conventional JJs, which have reached an industrial level of fabrication. Beyond material diversity, vdW materials offer fundamental new control over device symmetries and enable the realization of Hamiltonians unique to 2D systems.

    After a broad introduction, I will discuss two classes of materials and devices. First, proximitized graphene-based Josephson junctions that are gate tunable. The graphene Josephson FET enables a quantum-noise-limited parametric amplifier with performance comparable to the best discrete amplifiers in this class [1]. One can realize extremely sensitive and fast bolometers [2] – useful for dark matter search, among other applications. Second, twisted van der Waals heterostructures based on the high-temperature superconductor Bi2Sr2CaCu2O8+δ enable the realization of a high-temperature Josephson diode [3] for the first time. Such Josephson diodes offer an opportunity to realize new devices at liquid nitrogen temperatures.

    While opportunities abound with vdW JJs, the challenge of scalability must be overcome to translate them into real-world devices.

    [1] "Quantum-noise-limited microwave amplification using a graphene Josephson junction" Joydip Sarkar et al. ,  Nature Nanotechnology 17, 1147 (2022).

    [2] “ Kerr non-linearity enhances the response of a graphene Josephson bolometer,” Sarkar et al. ,  Nature Communications volume 16, 7043 (2025).

    [3] "High-temperature Josephson diode," Sanat Ghosh et al. Nature Materials 23, 612 (2024).

  • Seminars
    Date:
    09
    November, 2025
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    In vivo targeted and deterministic single cell cancer induction

    Prof. David Bensimon   |   

    Lunch at 12:45

    How cancer arises from a single normal cell is still the subject of active debate, affecting intervention strategies. While many cells may harbor oncogenic mutations, only a few unpredictably end-up developing a full-blown tumour. Various theories have been proposed to explain that transition, but none has been tested in vivo at the single cell level. Here using an optogenetic approach we permanently turn on an oncogene (KRASG12V) in a single cell of a zebrafish brain that, only in synergy with the transient co-activation of a reprogramming factor (VENTX/NANOG/OCT4), undergoes a deterministic malignant transition and robustly and reproducibly develops within 6 days into a full-blown cancer. The controlled way in which a single cell can thus be manipulated to give rise to cancer lends support to the “ground state theory of cancer initiation” through “short-range dispersal” of the first malignant cells preceding tumour growth.

    P. Scerbo B. Tisserand, M. Delagrange , H.Debare,   B.Ducos, D. Bensimon

    Students interested in meeting the speaker after the seminar may sign up here:

    LINK

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.bio

  • Colloquia
    Date:
    06
    November, 2025
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    Superconductivity and magnetism in crystalline graphite allotropes

    Physics Weissman Auditorium
    Prof. Andrea Young

    Humanity makes great use of the electric field effect: charging and discharging capacitors in low density semiconductors systems is the underpinning of the analog and digital electronics that define our age. At the same time, we know quantum matter to include far more than just electrical conductors and insulators.  I will describe the physics of crystalline graphite multilayers with rhombohedral stacking, where the competition between electron hopping within- and between- the graphene planes leads to a flat dispersion characterized by high electronic density of states and Berry curvature, which can be tuned by a perpendicular electric field.  Using electrostatic gates to tune both this interlayer potential and the total carrier density, I will show that a dizzying variety of magnetic and superconducting states can be realized, often within the same device. The exceptional experimental reproducibility of these structurally simple systems allows us to investigate a variety of effects in a controlled environment, including the role of spin orbit coupling or a moire potential, providing insight into the mechanisms of magnetism and superconductivity.  Most strikingly, quantized Hall effects and superconductivity can be realized in the same field-effect transistor for only slightly different values of a gate voltage, providing a versatile platform both to both study the mechanisms underlying these phases as well as build highly controllable interfaces between these paradigmatic phases of quantum matter.  

     

  • Seminars
    Date:
    02
    November, 2025
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Machines Learning without neurons in physical systems

    DR. Menachem Stern   |   

    lunch at 12:45

    From electrically responsive neuronal networks to immune repertoires, biological systems can learn to perform complex tasks. In this seminar, we explore physical learning, a framework inspired by computational learning theory and biological systems, where networks physically adapt to applied forces to adopt desired functions. Unlike traditional engineering approaches or artificial intelligence, physical learning is facilitated by physically realizable learning rules, requiring only local responses and no explicit information about the desired functionality. Our research shows that such local learning rules can be derived for broad classes of physical networks and that physical learning is indeed physically realizable, without computer aid, through laboratory experiments. We take further inspiration from learning in the brain to demonstrate the success of physical learning beyond the quasi-equilibrium regime, leading to faster learning with little penalty. By leveraging the advances of statistical learning theory in physical machines, we propose physical learning as a promising bridge between computational machine learning and biology, with the potential to enable the development of new classes of smart metamaterials that adapt in-situ to users’ needs.

  • Colloquia
    Date:
    30
    October, 2025
    Thursday
    Hour: 11:15-12:30

    Ants, Particles, and Puzzles

    Physics Colloquium

    Physics Weissman Auditorium
    Ofer Feinerman

    De-Gennes’s “ant-in-a-labyrinth” problem reminds us that physicists have an affinity for ants. Like particles, ants come in large groups and interact locally among themselves and with the environment. However, there are large discrepancies between an ensemble of particles and a colony of ants. While groups of particles are governed solely by microscopic laws and large-scale symmetries, ants appear able to sidestep these constraints to display a collective will aimed at macroscopic goals. In doing so, they often exhibit behaviors that resemble intelligence and problem-solving. I will present three puzzle-like configurations that quantify performance and expose limits: the ant-in-a-labyrinth puzzle, the piano-movers problem, and three-dimensional leaf-nest construction. For each, we will compare data to physics-inspired null models to locate where ants deviate from particle baselines and to identify the minimal individual-level ingredients that support an animate, cognitive colony.

     

  • Seminars
    Date:
    20
    October, 2025
    Monday
    Hour: 13:15-14:15

    The Clore Center for Biological Physics

    Fluctuations and large deviations of the current in diffusive systems

    Professor Bernard Derrida   |   

    Refreshments at 12:45

    For diffusive systems (i.e., systems which satisfy Fourier's law or Fick's law) maintained in a non-equiilibrium steady state by contact with two heat baths or two reservoirs, the macroscopic fluctuation theory developed over the last 25 years has become a major tool to calculate the fluctuations  and the large deviation function of the heat or of the particle currents. 

    After a review of the main achievements of the theory, I will try to list some open issues. In particular,  although the theory predicts the same large deviation
    function of the current in all dimensions, numerical calculations exhibit some small discrepancy in space dimension d > 2.
    This talk will try to explain the origin of these discrepancies.

    work in collaboration with Thierry Bodineau

  • Seminars
    Date:
    30
    September, 2025
    Tuesday
    Hour: 10:15-11:15

    The Clore Center for Biological Physics

    Comparative metagenomics using microbiome-wide sequence graphs

    Dr. Tal Korem   |   

    refreshments will be served at 9:45

    Identifying microbial genomic factors that underlie important phenotypes is a key goal of microbiological and microbiome research. Current approaches for this goal, however, cannot tap into the wealth of genomic information in a systematic manner, particularly in microbes that are not well-characterized. I will present a new conceptual and methodological approach for analyzing microbial communities using multi-sample sequence graphs. Our results demonstrate that this approach captures sequence and variant information more accurately than traditional approaches, provides graphs that are more suitable for comparative analyses, and is computationally tractable. I will end by demonstrating an application for predicting gut colonization trajectories of Vancomycin-resistant Enterococcus. Overall, our results underscore the value of graph-based frameworks for comparative metagenomic analyses.

  • Date:
    13
    July, 2025
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Probing extreme dynamics in proteins and DNA

    Prof. Hagen Hofmann   |   

    Lunch at 12:45

    Explaining life in terms of the jiggling and wiggling of atoms is a central goal in modern biophysics. The dynamics of folded proteins include concerted motions of thousands of atoms, thus clearly exceeding the capabilities of analytical theories. On the other hand, intrinsically disordered proteins (IDPs) are well described by analytic polymer models of different flavors. Yet, these models are not applicable if disorder and order mix, e.g., for IDPs that form partially ordered complexes or for highly compact IDPs. Using single-molecule spectroscopy, we studied the dynamics of such ‘mixed’ cases and found that even weak interactions can tremendously slow down the IDP-dynamics. In the second part of the talk, I will demonstrate that such protein disorder is key for transmitting allosteric signals across many nanometers in DNA. An intrinsically disordered tail of a DNA-binding protein amplifies microsecond fluctuations in DNA and increases the chance of binding proteins at a distant site. These findings have implications for our understanding of transcription activation in gene expression and suggest a new functional role for IDPs in transcription factors.

     

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

     

     

  • Colloquia
    Date:
    19
    June, 2025
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    Emergent Guage Fields in Quantum Condensed Matter

    Physics Weissmann Auditorium
    Steven Allan Kivelson

    It has long been understood that the exact (“fundamental”) gauge symmetry of the electromagnetic fields plays an important role in the theory of quantum materials.  What has come into focus more recently is that there exist essential properties of quantum phases of matter that are best understood in terms of an effective field theory with emergent gauge fields, rather than (or in addition to) in terms of broken symmetries.  Here, gauge invariance is not a symmetry of the microscopic problem but is rather an efficient representation of the low energy physics.  I will review the well-known usefulness of this perspective in the context of such old friends as fractional quantum Hall fluids and a variety of ``spin-liquids.’’ As time permits, I will also discuss recent theoretical results that suggest that exotic “resonating valence-bond” fluids, describable by emergent gauge theories, might exist in a much broader range of experimentally accessible platforms than has been previously appreciated.

  • Seminars
    Date:
    15
    June, 2025
    Sunday
    Hour: 13:15-14:30

    Canceled - The Clore Center for Biological Physics

    Probing extreme dynamics in proteins and DNA

    Prof. Hagen Hofmann   |   

    Lunch at 12:45

    Explaining life in terms of the jiggling and wiggling of atoms is a central goal in modern biophysics. The dynamics of folded proteins include concerted motions of thousands of atoms, thus clearly exceeding the capabilities of analytical theories. On the other hand, intrinsically disordered proteins (IDPs) are well described by analytic polymer models of different flavors. Yet, these models are not applicable if disorder and order mix, e.g., for IDPs that form partially ordered complexes or for highly compact IDPs. Using single-molecule spectroscopy, we studied the dynamics of such ‘mixed’ cases and found that even weak interactions can tremendously slow down the IDP-dynamics. In the second part of the talk, I will demonstrate that such protein disorder is key for transmitting allosteric signals across many nanometers in DNA. An intrinsically disordered tail of a DNA-binding protein amplifies microsecond fluctuations in DNA and increases the chance of binding proteins at a distant site. These findings have implications for our understanding of transcription activation in gene expression and suggest a new functional role for IDPs in transcription factors.

  • Seminars
    Date:
    08
    June, 2025
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Building accurate and functional neural circuits with a handful of design principles

    Prof. Elad Schneidman   |   

    Lunch at 12:45

    The map of synaptic connectivity between neurons shapes the computations that neural circuits carry - making the identification of the design principles of neural “connectomes” crucial for understanding brain development, learning, information processing, and behavior.

    We present a class of probabilistic generative models for the connectomes of different brain areas in zebrafish, worm, and mouse. Our models accurately replicate a wide range of circuit properties - synapse existence and strength, neuronal in-degree and out-degree, and sub-network motif frequencies -  using surprisingly small sets of biological and physical architectural features. We then show that simulated synthetic circuits generated by our models recapitulate the neural activity and computation performed by the real ones. We extend these generative models to study the development of connectomes over time, and show they accurately replicate the “developmental trajectory” of the connectome of C. elegans, revealing a simpler set of functional cell types than commonly assumed, and identifying distinct developmental epochs. We further study structure-function relationships in simulated spiking neural networks and learn a metric that predicts the similarity of networks based on a small set of architectural features. Our findings suggest that connectomes across species follow surprisingly simple design principles and offer a general computational framework for analyzing connectomes, linking their structure to function.

     

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

     

  • Colloquia
    Date:
    29
    May, 2025
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    Extra-solar Planets: Historical Perspective

    Physics Weissman Auditorium
    Prof. Tsevi Mazeh

    Since the groundbreaking discovery of 51 Pegasi b in 1995, a few thousands extra-solar planets have been identified, marking the beginning of a rapidly evolving new field in Astronomy. This talk will trace the history of exoplanet research and explore how these discoveries have reshaped our understanding of planetary formation and opening new frontiers in the study of planetary systems.

  • Seminars
    Date:
    25
    May, 2025
    Sunday
    Hour: 12:45-14:30

    The Clore Center for Biological Physics

    Self-assembled active elastic gels spontaneously curve and wrinkle similar to biological cells and tissues

    Prof. Anne Bernheim   |   

    Lunch at 12:45

     

    Living systems from individual cells to entire tissues adopt diverse curved shapes, appearing on many length scales and commonly driven by active contractile stresses generated in the cell cytoskeleton. Yet, how these forces generate specific 3D forms remains unclear. By recreating the cell cytoskeleton from basic components, with precisely controlled composition and initial geometry, we demonstrate that the spontaneous buildup of stress gradients generated by these molecular motors drive shape deformation. We identify the shape selection rules that determine the final adopted configurations. These are encoded in the initial radius to thickness aspect ratio, likely indicating shaping scalability. These results provide insights on the mechanically induced spontaneous shape transitions in contractile active matter, revealing potential shared mechanisms with living systems across scales.

     

     

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

  • Colloquia
    Date:
    22
    May, 2025
    Thursday
    Hour: 11:15-12:15

    Physics Colloquium

    Beyond Images: Leveraging Stable Diffusion Techniques for Particle Physics Simulations

    Physics Weissman Auditorium
    Prof. Eilam Gross   |   

    Generative AI models, including those behind image creation tools, have shown remarkable capabilities in transforming random inputs into coherent outputs. Inspired by these advancements, we've developed Parnassus, a deep-learning model designed for particle physics. Parnassus processes point clouds representing particles interacting with a detector and outputs reconstructed particle data.  Parnassus accurately replicates the particle flow algorithm and generalizes well beyond its training set. This approach exemplifies how techniques from image generation can be adapted to accelerate simulations in high-energy physics.

  • Seminars
    Date:
    18
    May, 2025
    Sunday
    Hour: 12:45-14:30

    The Clore Center for Biological Physics

    When Will the Cancer Start?

    Anatoly B. Kolomeisky   |   

    Lunch at 12:45

    Cancer is a genetic disease that results from accumulation of unfavorable mutations. As soon as genetic and epigenetic modifications associated with these mutations become strong enough, the uncontrolled tumor cell growth is initiated, eventually spreading through healthy tissues. Clarifying the dynamics of initiation is critically important for understanding the mechanisms of cancer. Here we present a new theoretical approach, stimulated by analogy with chemical reactions and other stochastic processes in physics and biology, to evaluate the dynamic processes associated with cancer initiation. It is based on a discrete-state stochastic description of the formation of tumors as a fixation of unfavorable mutations. Thus, the main idea is to map complex processes of cancer initiation into a network of stochastic transitions between specific states of the tissue. Using a first-passage analysis, the probabilities for cancer to appear and the average times before this happens are explicitly calculated. The method is applied for estimating the initiation times from clinical data for 28 different types of cancer. It is found, surprisingly, that the higher probability of cancer to occur does not necessarily lead to the fast starting the cancer. This suggests that both lifetime risks and cancer initiation times must be used to evaluate the possibility of appearance of the cancer tumor.  The similarity of the mechanisms of cancer initiation processes with dynamics of chemical reactions are discussed.  Furthermore, it is shown that the order of mutations might lead to different cancer initiation dynamics, explaining surprising experimental observations that order of mutations can affect the cancer outcome. Our view of cancer initiation as a motion in the effective free-energy landscape provides new insights into the mechanisms of these complex processes.

     

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

     

     

     

     

  • Seminars
    Date:
    11
    May, 2025
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Second law of Thermodynamics in Living Matter

    Dr. Tomer Markovich   |   

    Lunch will be served at 12:45

    Materials that are constantly driven out of thermodynamic equilibrium, such as active and living systems, typically violate the Einstein relation. This may arise from active contributions to particle fluctuations which are unrelated to the dissipative resistance of the surrounding medium. In this talk I will show that in these cases the widely used relation between informatic entropy production and heat dissipation does not hold. Consequently, fluctuation relations for the mechanical work, such as the Jarzynski and Crooks theorems, are invalid. The breaking of the correspondence between informatic entropy production and heat dissipation will then be related to the departure from the fluctuation-dissipation theorem. I will finally propose a temperaturelike variable that restores the correspondence between information and thermodynamics and gives rise to a generalized second law of thermodynamics. The Clausius inequality, Carnot maximum efficiency theorem, and relation between the extractable work and the change of free energy are recovered as well.

  • Colloquia
    Date:
    08
    May, 2025
    Thursday
    Hour: 11:15-12:30

    Dark Matter snooker (Dark matter via multiple collisions)

    Physics Weissman Auditorium
    Prof. Maxim Pospelov   |   

    The University of Minnesota

    Despite enormous experimental investment in searches of particle dark

    matter, certain well-motivated corners of parameter space remain to be

    elusive "blind spots" for direct detection. In my talk I will address two of

    such exceptions: light particles that simply do not have enough kinetic

    energy to detect, and strongly-interacting particles that quickly thermalize

    and also become sub-threshold for direct detection. I show that both blind

    spots can be probed through double collisions of Dark matter -- first with

    some energetic Standard model particles (solar electrons, cosmic rays,

    particles in a beam, neutrons in nuclear reactors etc) that bring DM to

    energies above thresholds followed by the scattering inside a detector. This

    way, I derive novel constraints on light dark matter, as well as stronglyinteracting

    dark matter models, using existing dark matter and neutrino

    experiments.

  • Seminars
    Date:
    04
    May, 2025
    Sunday
    Hour: 12:45-14:30

    The Clore Center for Biological Physics

    Chromosomes as communication and memory machines

    Prof. Leonid Mirny   |   

    Lunch at 12:45

    Chromosomes are long polymers of genomic DNA decorated with proteins. We are interested in understanding how cells fold chromosomes to read, write, and process genetic and epigenetic information. Could the way chromosomes are folded carry information itself?

    Recent works from my group and others have shown that chromosomes function as active polymers. First, we discovered that chromosomes are folded by the ATP-dependent process of loop extrusion, where molecular motors form progressively larger loops. This collective action of nanometer-sized motors shapes micrometer-sized chromosomes. We demonstrated how this mechanism can also establish complex long-range communication between regulatory elements and genes.

    Second, we found that chromosome folding plays a key role in storing "epigenetic memory, " which refers to patterns of chemical marks along the genome. Although these marks are subject to loss and spreading by enzymes, when genome folding is influenced by the marks, the pattern can be preserved for hundreds of cell divisions. We also identified a parallel between this mechanism of epigenetic memory and associative memory in neural networks, suggesting that this system may be capable of performing more complex information-processing tasks.

    Students interested in meeting the speaker are invited to register here:

    https://forms.gle/eE38rBziWH8D8cw1A

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

  • Seminars
    Date:
    27
    April, 2025
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    "Locomotion of thin active sheets by curvature modulation"

    Prof. Eran Sharon   |   

    Lunch at 12:45

    I will present the results of recent experiments with ribbons made of active, "BZ gel". The ribbons "flap", i.e.,   periodically change their curvature. When confined to a liquid interface,   the ribbons periodically "surf" from the center of the container to its walls.

    We analyze this motion and suggest that it represents a new, generic, type of locomotion; locomotion via curvature mismatch. In the experiments, the fluid interface is curved. When the curvatures of the ribbon and the surface are different,   both the ribbon and interface are deformed, a deformation that costs energy. Gradients of this energy lead to forces and torques on the ribbon and to its motion. We solve the equation of motion and successfully compute the trajectories of the active ribbons.

    Our model suggests that such motion could occur in purely solid systems. Specifically, it allows a flexible sheet, which is confined to curved (flexible or rigid) surface, to propagate without applying tangential forces. The possible relevance of this model to "curvotaxis", the phenomenon in which cells propagate and orient themselves in correlation with the substrate curvature, will be discussed. 

    students whom are interested with a personal meeting, (The registration is limited to 5 participants) ( if you are interested in personal meeting please register)

    https://forms.gle/vfr9a2K3fYyKfx3d7

     

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

  • Colloquia
    Date:
    24
    April, 2025
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    The quantum valley Hall effect and topological valleytronics

    Physics Weissman Auditorium
    Prof. Jun Zhu   |   

    Penn State University

    One-dimensional edge states arising from a system of non-trivial bulk topology are potential quantum information carriers and platforms to explore the physics of topology and interactions. In this talk, I will discuss our effort in realizing the quantum valley Hall effect and the properties of its edge state, the kink states. Using van der Waals stacking and precision lithography, we create valley-momentum locked kink states in bilayer graphene and demonstrate its precise resistance quantization, a hallmark of ballistic edge state transport. The quantization is robust to temperatures of tens of Kelvin, which bolds well for potential applications. The all-electrical construction of the kink states gives us the ability to realize a variety of electron quantum optics operations, now in an edge state platform. I will show the workings of a reconfigurable ballistic waveguide, a topological valley valve, and a continuously tunable electron beam splitter. The cleanness and controllability of the kink states enable future experiments in helical Luttinger liquid and its use as quantum information highways.

     

    1. Li, J. et al. Gate-controlled topological conducting channels in bilayer graphene. Nature Nanotechnology 11, 1060, doi:10.1038/Nnano.2016.158 (2016).

    2. Li, J. et al. A valley valve and electron beam splitter. Science 362, 1149, doi:10.1126/science.aao5989 (2018).

    3. Huang, K et al.  High-temperature quantum valley Hall effect with quantized resistance and a topological switch. Science 385, 657, doi:10.1126/science.adj3742 (2024).

  • Seminars
    Date:
    20
    April, 2025
    Sunday
    Hour: 12:45-14:30

    The Clore Center for Biological Physics

    Horizontal Gene Transfer Networks: A Physics Perspective on Bacterial Evolution

    Dr. Michael Sheinman   |   

    Lunch at 12:45

    Horizontal gene transfer (HGT) is a central mechanism in bacterial evolution, allowing organisms to exchange genetic material outside of traditional reproduction. This process is a key driver of antibiotic resistance and the emergence of virulence traits.
    Unlike vertical inheritance, HGT leads to non-tree-like evolutionary relationships, motivating a network-based view of microbial evolution.

    In this talk I will present a minimal model for HGT and show how it captures distinctive statistical features of bacterial genomes. By combining the model with the genomic data, I infer general properties of the underlying HGT networks. 

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

     

  • Colloquia
    Date:
    10
    April, 2025
    Thursday
    Hour: 16:00-17:30

    Double Scaled SYK, Infinite Temperature, de Sitter Space, and One-Plus-One QCD.

    Virtual Physics Colloquium

    Via Zoom
    Prof. Leonard Suskind   |   

    Session ID: 955 0510 1092

    Passcode: 666666

    I will explain the conjectured duality between double-scaled SYK

    at infinite temperature and the static patch of a particular

    version of JT-de Sitter space. The conjectured duality raises the

    question of what particle physics is like in the bulk of the static

    patch.

    The answer: I will give it in the lecture.

  • Colloquia
    Date:
    03
    April, 2025
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    Hunting Black Holes in our Galaxy

    Physics Weissman Auditorium
    Prof. Hans-Walter Rix   |   

    Max Planck Institute for Astronomy in Heidelberg

    Stellar evolution makes us believe that we have over 10 million stellar-mass black holes (BH) in our own Galaxy, whose total mass should far exceed the mass of the central black hole. For half a century we have known that stellar-mass BHs exist, from the few dozen X-ray binaries, where tidally torn material from a very close stellar companions accretes onto the black hole and makes it shine? But is there actually this vast population of dormant BHs, either in wide binaries with a normal star or just free floating? The hunt for these BHs is now on, using ESA’s Gaia mission and other facilities: we have now detected the first dormant BHs in binary systems, after some spectacular earlier misidentification of BH impostors. And, there is first direct evidence for free-floating BHs by means of microlensing. These first discoveries already pose interesting puzzles about how these BH systems could have formed. The next few years offer spectacular prospects of finding far more dormant BHs, whether they are free-floating or in binaries, which should teach us how and when stellar-mass black holes form.

  • Seminars
    Date:
    30
    March, 2025
    Sunday
    Hour: 12:45-14:30

    The Clore Center for Biological Physics

    An information content principle explains regulatory patterns of human gene expression across tissues.

    Professor Yitzhak Pilpel   |   

    Lunch at 12:45

    In my talk I will introduce a novel framework that applies a principle from information theory, that of Minimum Description Length (MDL), to understand how regulation of human gene expression across organs, tissues is shaped by regulatory architecture.

    Examination of expression patterns of human genes across the body reveals an intriguing duality: While many genes are expressed in only one tissue, others, known as “housekeeping genes”, are ubiquitously expressed in essentially every tissue. Yet, interestingly, a considerable portion of the genes are on the mid-range, deliberately expressed in many tissues but are also absent in many others.

    Intuitively, in human language terms, specifying the expression program of the genes on the two ends of the spectrum requires a short description – e.g. “expressed in all tissues”, or “expressed only in brain”. Yet specifying the expression of genes in the middle of the scale requires longer description, or a longer MDL, having to specify in each tissue if the gene is expressed or not, and at what level. We sought to measure regulatory complexity of each human gene and examine if the MDL principle predicts and explains regulatory complexity. Our findings lend support to the MDL principle’s prediction. Our measure of regulatory complexity of a gene’s expression pattern can be predicted by quantifying its regulatory information content. In the talk we shall discuss evolutionary implications to the development of multi-cellularity.

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

     

  • Colloquia
    Date:
    27
    March, 2025
    Thursday
    Hour: 11:15-12:15

    Simulating high-temperature superconductivity in a triangular moiré lattice

    Physics Weissman Auditorium
    Prof. Kin Fai Mak   |   

    Light refreshments at 11:00

    Moiré materials built on transition metal dichalcogenide semiconductors have emerged as a tunable platform for simulating the Hubbard model on a triangular lattice. A natural question arises: Can the platform be tuned to yield a phase diagram similar to that in high-temperature cuprate superconductors? In this talk, I will discuss the emergence of “high-temperature” superconductivity near the Mott transition in a triangular moiré lattice with intermediate coupling strength. The emergent doping-temperature phase diagram looks remarkably similar to that in cuprate superconductors. I will also discuss the evolution of the phase diagram by tuning the band structure of the material by gating. The results could provide a new angle for understanding the phenomenon of high-temperature superconductivity in strongly correlated materials. 

     

  • Seminars
    Date:
    23
    March, 2025
    Sunday
    Hour: 12:45-14:30

    CANCELED - The Clore Center for Biological Physics

    Self-assembled active elastic gels spontaneously curve and wrinkle similar to biological cells and tissues

    Prof. Anne Bernheim   |   

    Lunch at 12:45

    Living systems from individual cells to entire tissues adopt diverse curved shapes, appearing on many length scales and commonly driven by active contractile stresses generated in the cell cytoskeleton. Yet, how these forces generate specific 3D forms remains unclear. By recreating the cell cytoskeleton from basic components, with precisely controlled composition and initial geometry, we demonstrate that the spontaneous buildup of stress gradients generated by these molecular motors drive shape deformation. We identify the shape selection rules that determine the final adopted configurations. These are encoded in the initial radius to thickness aspect ratio, likely indicating shaping scalability. These results provide insights on the mechanically induced spontaneous shape transitions in contractile active matter, revealing potential shared mechanisms with living systems across scales.

     

     

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

  • Seminars
    Date:
    09
    March, 2025
    Sunday
    Hour: 12:45-14:30

    The Clore Center for Biological Physics

    Mechanical communication in cardiac cell beating

    Prof. Shelly Tzlil   |   

    Lunch at 12:45

    Cell-cell communication is essential for growth, development and function. Cells can communicate mechanically by responding to mechanical deformations generated by their neighbors in the extracellular matrix (ECM).

    We use a 2D cardiac tissue model to study the role of mechanical communication between cardiac cells in the normal conduction wave. We quantify the mechanical coupling between cells in a monolayer and use this to identify a critical threshold of mechanical coupling, below which spiral waves are induced in the tissue. We demonstrate that normal conduction wave can be recovered only using mechanical stimulation. We further show that mechanical coupling reduces the sensitivity to geometrical defects in the tissue.

    We show that due to the dynamic viscoelastic properties of collagen hydrogels (a major component of the cardiac ECM), the shape of the mechanical signal changes in a frequency dependent manner as it propagates through the gel, leading to a frequency dependent mechanical communication. Moreover, we show that the sensitivity of cardiac cell response to the shape of the mechanical signal results from its sensitivity to the loading rate. We also show that an optimal loading rate exists for mechanical communication, implying that there are ideal viscoelastic properties for effective mechanical communication.

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

  • Seminars
    Date:
    02
    March, 2025
    Sunday
    Hour: 12:45-14:30

    The Clore Center for Biological Physics

    Emergent Disorder and Mechanical Memory in Periodic Metamaterials

    Prof. Yair Shokef   |   

    Lunch at 12:45

    Ordered mechanical systems typically have one or only a few stable rest configurations, and hence are not considered useful for encoding memory. Multistable and history-dependent responses usually emerge from quenched disorder, for example in amorphous solids or crumpled sheets. Inspired by the topological structure of frustrated artificial spin ices, we introduce an approach to design ordered, periodic mechanical metamaterials that exhibit an extensive set of spatially disordered states. We show how such systems exhibit non-Abelian and history-dependent responses, as their state can depend on the order in which external manipulations were applied. We demonstrate how this richness of the dynamics enables to recognize, from a static measurement of the final state, the sequence of operations that an extended system underwent. Thus, multistability and potential to perform computation emerge from geometric frustration in ordered mechanical lattices that create their own disorder.

  • Seminars
    Date:
    23
    February, 2025
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    What can microbes tell us about their environment

    Dr. David Zeevi   |   

    Lunch at 12:45

    Microbial communities act as living sensors of their environment, continuously adapting to and recording changes in their surroundings across temporal and spatial scales. This capacity, combined with their central role in global biogeochemical cycles, makes microbes ideal indicators of ecosystem health. However, our understanding of how these communities respond to anthropogenic perturbations remains limited. 

    In this talk, I will present two complementary approaches to decode environmental information from microbial communities. First, I will show that environmental temperature can be accurately predicted from microbial DNA composition alone, revealing fundamental principles of genome-wide thermal adaptation that transcend ecosystem boundaries. This work uncovers how evolutionary pressures shape microbial genomes across diverse habitats and provides insights into long-term community responses to climate change. Second, I will introduce a novel approach for measuring real-time bacterial growth rates in natural environments from a single sample, without prior knowledge on community composition. This method could enable us to track immediate ecological responses to environmental perturbations. By combining these evolutionary and ecological perspectives, we can begin to establish universal principles governing microbial responses to environmental change across different timescales. This multi-scale understanding is crucial for predicting and potentially mitigating the impacts of human activities on microbial ecosystems, from soil degradation to climate change.

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

  • Seminars
    Date:
    16
    February, 2025
    Sunday
    Hour: 12:45-14:30

    The Clore Center for Biological Physics

    Learning from learning systems

    physics Drory auditorium
    Prof. Omri Barak   |   

    Lunch at 12:45

    The word “learning” often conjures images of school or other human endeavors. Neuroscientists have used the word for a wide range of phenomena in the animal kingdom. For those engulfed in python code, perhaps learning is also associated with gradient descent or other technical terms from computer science. What do we gain from using the same name for all these cases?
    In this talk, I will argue that systems that learn can be useful models of one another. This is because of general principles that seem to transcend specific instances, such as multiplicity of solutions, low-rank perturbations and more. I will demonstrate these properties using several examples. These include representational drift, the connection (or lack thereof) between neural activity and behavior, and more.
    Throughout the talk I will try to highlight the benefits, dangers and challenges of this approach.

  • Seminars
    Date:
    09
    February, 2025
    Sunday
    Hour: 12:45-14:15

    The Clore Center for Biological Physics

    The role of promiscuous molecular recognition in the evolution of self-incompatibility in plants

    Dr. Tamar Friedlander   |   

    Lunch at 12:45

    How do biological networks evolve and expand? We study these questions in the context of the plant collaborative-non-self recognition self-incompatibility system. Self-incompatibility evolved to avoid self-fertilization among plants. It relies on specific molecular recognition between highly diverse proteins expressed in the female and male reproductive organs, such that the combination of proteins an individual possesses determines its mating partners, defining distinct ‘mating specificities’. Although a few dozen mating specificities are known from population surveys, previous models struggled to pinpoint the evolutionary trajectories by which new specificities evolved. We construct a novel theoretical framework, synthesizing evolutionary and biophysical models, that crucially affords interaction promiscuity and multiple distinct partners per protein, as is seen in empirical findings. We demonstrate spontaneous self-organization of the population into distinct 'classes' with full between-class compatibility and a dynamic long-term balance between class emergence and decay.

    Our work highlights the importance of molecular recognition promiscuity to network evolvability. Promiscuity was found in additional systems suggesting that our framework could be more broadly applicable.

     

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

     

     

  • Seminars
    Date:
    02
    February, 2025
    Sunday
    Hour: 12:45-14:30

    The Clore Center for Biological Physics

    Design principles of protein-DNA Recognition Specificity in Embryonic Stem Cells

    David B. Lukatsky   |   

    Lunch at 12:45

    Transcription factors (TFs) bind genomic DNA regulating gene expression and developmental programs in embryonic stem cells (ESCs). Even though comprehensive genome-wide molecular maps for TF-DNA binding are experimentally available for key pluripotency-associated TFs, the understanding of molecular design principles responsible for TF-DNA recognition remains incomplete. In this talk, I will show that binding preferences of key pluripotency TFs exhibit bimodality in the local GC-content distribution. Sequence-dependent binding specificity of these TFs is distributed across three major contributions. First, local GCcontent is dominant in high-GC-content regions. Second, recognition of specific k-mers is predominant in low-GC-content regions. Third, short tandem repeats (STRs) are highly predictive in both low- and high-GC-content regions. In sharp contrast, binding preferences of a key oncogenic protein, c-Myc, are exclusively dominated by local GC-content and STRs in high-GC-content genomic regions. I will propose that the transition in the TF-DNA binding landscape upon ESC differentiation is solely regulated by the concentration of c-Myc, which forms a bivalent c-Myc-Max heterotetramer upon promoter binding, competing with key pluripotency factors. Taken together, these findings point out that c-Myc may significantly affect the genome-wide TF-DNA binding landscape, chromatin structure, and enhancerpromoter interactions.

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

  • Seminars
    Date:
    30
    January, 2025
    Thursday
    Hour: 16:15-18:00

    Special Clore Seminar - The Clore Center for Biological Physics

    The Physics of Ancient Chromosomes

    Prof. Erez Lieberman Aiden   |   

    Refreshments at 16:00

    We report that skin from a female woolly mammoth (†Mammuthus primigenius) that died 52, 000 years ago retained its ancient genome architecture. We hypothesize that, shortly after this mammoth’s death, the sample spontaneously freeze-dried in the Siberian cold, leading to a glass transition that preserved subfossils of ancient chromosomes at nanometer scale. This talk will explore the physics that underlies the preservation of ancient chromosomes.

     

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

  • Colloquia
    Date:
    30
    January, 2025
    Thursday
    Hour: 11:15-12:30

    In honor of the 100th birthday of Prof. Yigal Talmi

    Factorization and Universality in Nuclear Physics

    Physics Weissman Auditorium
    Prof. Nir Barnea

    The study of dilute, strongly interacting quantum gases reveals

    universal properties that transcend the specifics of individual

    systems. These features arise from their short-range behavior

    and are encapsulated in a key quantity called the “contact”, which

    quantifies the probability of two particles being in close proximity.

    In this talk, I will introduce the contact theory and its extension to

    nuclear and molecular systems beyond the zero-range limit. I will

    demonstrate its applicability in analyzing nuclear electron

    scattering and photo absorption reactions.

    Additionally, I will discuss how mean-field approximations, such as

    the nuclear shell model, can effectively estimate the contact,

    offering valuable insights into the underlying physics.

  • Colloquia
    Date:
    27
    January, 2025
    Monday
    Hour: 11:15-12:30

    Physics Colloquium

    Programmable quantum many-body physics with Rydberg atom arrays

    Dr. Tom Manovitz   |   

    Light refreshments will be served at 11:00

    Programmable quantum platforms have emerged as powerful tools for studying quantum many-body phenomena, with applications ranging from condensed matter and high energy physics to quantum algorithms. In this talk, I will discuss recent developments involving programmable Rydberg atom arrays, which allow for precise and coherent control of hundreds of atoms in two dimensions, along with individual addressability and reconfigurable geometry. First, I will describe explorations of ordering dynamics in a quantum magnet following a quantum phase transition. Using individual atom control, we uncover the interplay of quantum criticality and non-equilibrium phenomena, and observe long-lived oscillations of the order parameter akin to an amplitude (“Higgs”) mode, with interesting implications near the quantum critical point. I will then describe the digital realization of the Kitaev honeycomb model, including observation of an exotic non-Abelian spin-liquid, as well as the use of topological order to design a programmable fermionic simulator. These measurements introduce new avenues for the study of quantum criticality and fermionic models, respectively. Finally, I will briefly discuss future opportunities in explorations of quantum many-body physics with atom arrays, with emphasis on new frontiers in the study of quantum criticality.

  • Colloquia
    Date:
    23
    January, 2025
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    It takes two to tango: The physics of heterogeneous bacterial active matter systems

    Physics Weissman Auditorium
    Prof. Joel Stavans   |   

    Light refreshments at 11:00

    Non-equilibrium active matter systems often exhibit self-organized, collective motion that can give rise to the emergence of coherent spatial structures. Prime examples covering many length scales range from mammal herds, fish schools and bird flocks, to insect and robot swarms. Despite significant advances in understanding the behavior of homogeneous systems in the last decades, little is known about the self-organization and dynamics of heterogeneous active matter. I will present results of bioconvection experiments with multispecies suspensions of wild-type bacteria from the hyper-diverse bacterial communities of Cuatro Ciénegas, Coahuila, whose origin dates back to the pre-Cambrian. Under oxygen gradients, these bacteria swim in auto-organized, directional flows, whose spatial scales exceed the cell size by orders of magnitude, demonstrating a plethora of amazing dynamical behaviors, including segregation. I will present evidence supporting the notion that the mechanisms giving rise to these complex behaviors are predominantly physical, and not a result of biological interactions. This research significantly advances our understanding of both heterogeneity in active matter, as well as in the dynamics of complex microbial ecological communities, bringing profound insights into their spatial organization and collective behavior.

  • Seminars
    Date:
    19
    January, 2025
    Sunday
    Hour: 12:45-14:30

    The Clore Center for Biological Physics

    A social view of viral decision making

    Prof. Avigdor Eldar   |   

    lunch will be served at 12:45


    Temperate bacterial viruses (or phages) have two divergent life cycles when infecting their host; A virulent (lytic) cycle where they rapidly replicate to produce hundreds of virions and kill their host, or a dormant (lysogenic) cycle where it typically integrates into the host genome and replicate with it. The social environment of the cell is a major determinant of the phage’s decision between its life cycles, but the consequences of sociality are still being explored. In this lecture, I will introduce the canonical phage lambda model where this has been studied and a recent model for phage sociality which is based on detection of small molecule signals. I will then discuss three works which combine experiments, genomics and theory to discuss the nature of social signals in different systems and their implication for phage decision making, social cooperation and their evolution.

     

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

     

  • Seminars
    Date:
    12
    January, 2025
    Sunday
    Hour: 12:45-14:30

    The Clore Center for Biological Physics

    Rethinking Cryo-EM, by Cryo-STEM

    Prof. Michael Elbaum and Dr Shahar Seifer   |   

    lunch will be served at 12:45

    Cryo-EM has famously revolutionized structural biology with atomic-scale resolution of macromolecules in 3D. The conventional protocol is based on wide-field imaging with phase contrast introduced by defocus, followed by extensive image processing and averaging from a great number of identical objects. Key assumptions break down in the extension toward 3D imaging of thicker specimens such as cells, however, and especially for interpretation of unique features.

    The talk will be in two parts (by Michael and Shahar). The first will introduce an alternative imaging modality by scanning a focused probe, i.e., scanning transmission electron microscopy, or STEM, which circumvents some of these constraints. New camera technologies enable recording of the entire pattern of diffraction at every pixel, called 4D STEM. Combining the imaging with tomography, we explore new methods to exploit the wave coherence for 3D reconstruction with optimal contrast and resolution. Examples include crystals of heme, intact cells and sections of cell multilayers, and bacteriophage for the latest advances. The second part will center on the physical mechanisms of electron scattering relevant to cryo-EM. Combined with an energy loss spectrometer, a 4D STEM measurement provides atomic differential cross-sections, both elastic and inelastic. The elastic part relates to de Broglie phase delay by the average electric potential. The inelastic part is mainly due to generation of plasmons and scattering by the resulting polarization. The cross-sections provide data to test new modeling approaches, as well as to develop characterization tools for biological and other organic materials.

    FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/

  • Colloquia
    Date:
    12
    January, 2025
    Sunday
    Hour: 11:15-12:30

    Emerging Quantum Pheneomena in Nonlinear Nanophotonics: Toward New Regimes of Light-Matter Interactions

    Physics Library
    Dr. Eran Lustig   |   

    Stanford University, CA, USA

    Nanophotonics is at the forefront of research and development in scalable quantum technologies,

    ranging from quantum sensing to quantum computing. Traditionally, inherently weak photon-photon

    and photon-atom interactions in dielectric materials pose significant challenges to fully exploiting the

    potential of these platforms. However, recent advances in the fabrication of nonlinear microresonators

    with nanometric features have allowed for the enhancement of all-optical interactions,

    necessitating new approaches to generating, controlling, and measuring quantum light.

    In this seminar, I will delve into unexplored regimes at the intersection of nonlinear and quantum

    optics. I will begin by showcasing our latest advancements in developing integrated microresonators

    in thin-film 4H-Silicon Carbide. This innovation enables nonlinear photonics, quantum optics, and

    collective quantum emitter excitations on the same platform. Following this, I will present our

    experimental demonstration of quadrature lattices of the quantum vacuum. This work shows how

    pulses that spontaneously emerge in microresonators can generate lattice dynamics of the quantum

    vacuum and how we can exert control over these dynamics.

    I will then discuss the broader implications of our findings, including enhanced interactions with

    quantum emitters, and ultrafast nonlinear quantum nanophotonics, which enable nonlinear

    interactions at the single photon level. These outcomes pave the way toward new regimes of lightmatter

    interactions that are enabled on scalable photonic microchips, with transformative

    implications for fundamental physics and quantum applications.

  • Colloquia
    Date:
    09
    January, 2025
    Thursday
    Hour: 11:15-12:30

    Black Holes in Galaxies: Experimental Evidence & Cosmic Evolution

    Prof. Reinhard Genzel

    About a century after Albert Einstein's presentation of General Relativity and Karl Schwarzschild's first solution, have three experimental techniques made remarkable progress in proving the existence of the Schwarzschild/Kerr black hole solution. I will describe the impressive progress of high resolution near-infrared and radio imaging and interferometry, and of precision measurements of gravitational waves in the Galactic Center and other galaxies. I will then discuss what we now know about the cosmic co-evolution and growth of galaxies and black holes, and finish with the riddle of massive black holes detected by JWST only a few hundred Myrs after the Big Bang.

  • Seminars
    Date:
    08
    December, 2024
    Sunday
    Hour: 12:45-14:30

    The Clore Center for Biological Physics

    Emergent Spatiotemporal Patterns in Insect Swarms

    Prof. Orit Peleg   |   

    You are invited to the Clore Seminar

    Sunday, December 8th, at 13:15

    The seminar will take place in the physics library

    (Lunch at 12:45)

    For the overwhelming majority of organisms, effective communication and coordination are critical in the quest to survive and reproduce. A better understanding of these processes can benefit from physics, mathematics, and computer science – via the application of concepts like energetic cost, compression (minimization of bits to represent information), and detectability (high signal-to-noise-ratio). My lab's goal is to formulate and test phenomenological theories about natural signal design principles and their emergent spatiotemporal patterns. To that end, we adopted insect swarms as a model system for identifying how organisms harness the dynamics of communication signals, perform spatiotemporal integration of these signals, and propagate those signals to neighboring organisms. In this talk, I will focus on two types of communication in insect swarms: visual communication, in which fireflies communicate over long distances using light signals, and chemical communication, in which bees serve as signal amplifiers to propagate pheromone-based information about the queen's location. Through a combination of behavioral assays and computational techniques, we develop and test model-driven hypotheses to gain a deeper understanding of these communication processes and contribute to the broader understanding of animal communication.

  • Colloquia
    Date:
    05
    December, 2024
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    IS EARTH EXCEPTIONAL?

    Prof. Livio Mario   |   

    Light refreshments at 11:00

    https://www.mario-livio.com/

    The questions “How did life on Earth begin?” and “Are we alone in the universe?” are arguably two of the most intriguing in science. While until recently these questions tended to be relegated to the “too difficult” box, the attempts to answer them have now become extraordinarily vibrant and dynamic frontiers of science. I will describe how the quest for cosmic life follows two parallel, independent lines of research: cutting-edge laboratory studies aimed at determining whether life can emerge from pure chemistry, and advanced astronomical observations searching for signs of life on other planets and moons in the solar system and around stars other than the Sun. I will examine how using knowledge acquired through ingenious chemical experimentation, geological studies, advanced astronomical observations, and imaginative theorizing researchers have managed to delineate a plausible pathway leading from the formation of the Earth to the appearance of the early biological cells.  

  • Seminars
    Date:
    01
    December, 2024
    Sunday
    Hour: 13:15-14:30

    Memory in Capillary Networks

    The Clore Center for Biological Physics Seminar

    Physics Library
    Dr. Bat-El Pinchasik

    Capillary networks are prevalent in nature and biology, playing a crucial role in systems like animal vasculature and plant capillaries, with broad applications in medicine and science. However, many aspects of how these networks regulate and control flow remain unresolved. While the basic principles of capillary networks and their functions are well understood, ongoing research seeks to uncover how these systems dynamically respond to environmental changes, adapt to varying conditions, and whether they retain a memory of past states. Developing a model system for capillary networks allows us to pose exciting new questions, such as: "Can capillary networks store memory?"

    Building such a model presents two key challenges. First, the need to dynamically modify the nature of bonds within the networks and understand its impact on transport. Second, designing networks capable of evolving in response to external stimuli. Successfully addressing these challenges could transform our ability to actively control macroscale flow by manipulating local bonds within the networks.

    Here, a novel experimental model of capillary networks is proposed, consisting of hundreds of interconnected liquid diodes. Like electrical diodes, these microscale surface structures direct liquid flow in specific directions while preventing reverse flow. However, under certain conditions, liquid diodes may fail, permitting bidirectional flow and introducing bonds of varying properties within the capillary network.

    This system will allow us to investigate whether the wetting state of liquids in the network depends on its actuation history—essentially exploring whether capillary networks can exhibit memory. This question opens up new possibilities, including the potential to encode information within these networks, analyze how transport responds to external stimuli, study the interplay between global actuation and local fluid dynamics, explore the coupling between mechanics and flow, and better understand how information propagates through capillary systems.

  • Seminars
    Date:
    28
    November, 2024
    Thursday
    Hour: 10:24-11:24

    Memory in Capillary Networks

    The Clore Center for Biological Physics Seminar

    Physics Library
    Dr. Bat-El Pinchasik

    Capillary networks are prevalent in nature and biology, playing a crucial role in systems like animal vasculature and plant capillaries, with broad applications in medicine and science. However, many aspects of how these networks regulate and control flow remain unresolved. While the basic principles of capillary networks and their functions are well understood, ongoing research seeks to uncover how these systems dynamically respond to environmental changes, adapt to varying conditions, and whether they retain a memory of past states. Developing a model system for capillary networks allows us to pose exciting new questions, such as: "Can capillary networks store memory?"

    Building such a model presents two key challenges. First, the need to dynamically modify the nature of bonds within the networks and understand its impact on transport. Second, designing networks capable of evolving in response to external stimuli. Successfully addressing these challenges could transform our ability to actively control macroscale flow by manipulating local bonds within the networks.

    Here, a novel experimental model of capillary networks is proposed, consisting of hundreds of interconnected liquid diodes. Like electrical diodes, these microscale surface structures direct liquid flow in specific directions while preventing reverse flow. However, under certain conditions, liquid diodes may fail, permitting bidirectional flow and introducing bonds of varying properties within the capillary network.

    This system will allow us to investigate whether the wetting state of liquids in the network depends on its actuation history—essentially exploring whether capillary networks can exhibit memory. This question opens up new possibilities, including the potential to encode information within these networks, analyze how transport responds to external stimuli, study the interplay between global actuation and local fluid dynamics, explore the coupling between mechanics and flow, and better understand how information propagates through capillary systems.

  • Seminars
    Date:
    24
    November, 2024
    Sunday
    Hour: 13:15-14:30

    2024 SPECIAL CLORE SEMINAR

    this year's nobel prizes explained

    Prof. Eran Hornstein,Prof. Eytan Domany,Prof. Sarel-Jacob Fleishman
    Physiology or Medicine Victor Ambros and Gary Ruvkun discovered microRNA, a new class of tiny RNA molecules that play a crucial role in gene regulation. Their groundbreaking discovery in the small worm C. elegans revealed a completely new principle of gene regulation. This turned out to be essential for multicellular organisms, including humans. MicroRNAs are proving to be fundamentally important for how organisms develop and function. Physics John Hopfield introduced a spin model that can store and reconstruct information. Geoffrey Hinton built on Hopfield’s idea to invent the Boltzmann Machine, that is able to learn from examples to reconstruct a set of desired patterns. He also popularized and improved Backpropagation of Errors, a method actually used in today’s advanced AI technology (e.g. Deep Learning). Chemistry The Nobel Prize in Chemistry 2024 is about proteins, life’s ingenious chemical tools. David Baker has succeeded with the almost impossible feat of building entirely new kinds of proteins. Demis Hassabis and John Jumper have developed an AI model to solve a 50-year-old problem: predicting proteins’ complex structures. These discoveries hold enormous potential.
  • Seminars
    Date:
    13
    November, 2024
    Wednesday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Enzymes as sequence-encoded, viscoelastic catalytic machines

    Prof. Tsvi Tlusty   |   Center for Soft and Living Matter, Ulsan National Institute of Science and Technology.
    Protein function is the combined product of chemical and mechanical interactions encoded in the gene. Thus, the function of enzymes relies on finetuning the chemical groups at the active site, but also on large-scale mechanical motions, allowing enzymes to bind to substrates selectively, reach the transition state, and release products. We will discuss recent work aiming to probe directly the linkage between these collective internal motions and the functionality of enzymes, using nano-rheological measurements, AI-prediction of point mutation effects, and physical theory. This work proposes a physical view of enzymes as viscoelastic catalytic machines with sequence-encoded mechanical specifications, which are modulated via long-ranged force transduction.
  • Seminars
    Date:
    10
    November, 2024
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Two-Part Seminar: Predicting antibiotic resistance & AI-driven science

    Prof. Roy Kishony   |   Technion -Faculty of Biology, Department of Bioinformatics and Systems Biology
    In this two-part talk, I will try to cover two separate lines of research: Machine learning of antibiotic resistance and AI-driven Science. In the first half, I will describe our efforts to understand and predict antibiotic resistance at the single patient level. I will describe a series of experimental-computational methodologies for following and identifying recurrent patterns in the evolution of antibiotic resistance in the lab and in the clinic. Combined with machine-learning approaches applied to electronic patient records, these tools lead to predictive diagnostics of antibiotic resistance and algorithms for personalized treatments of microbial infections. In the second part of the talk, we will shift gear and talk about AI-driven science. I will describe and demo “data-to-paper”: a platform that autonomously guides LLMs (like ChatGPT) to perform entire research cycles. Provided with data alone, data-to-paper can raise hypotheses, design research plans, write and debug analysis codes, generate and interpret results, and write complete research papers. Automatic information-tracing through the process creates manuscripts in which results, methods and data are programmatically chained. Our work thereby demonstrates a potential for AI-driven acceleration of scientific discovery while enhancing, rather than jeopardizing, traceability, transparency and verifiability. I will describe the strengths of the approach as well as limitations and challenges. Prof. Kishony would be available to discuss with students and postdocs after his seminar (2:15 pm - 3 pm). So we encourage interested students and postdocs to stay after his talk! FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/
  • Colloquia
    Date:
    05
    September, 2024
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    New era in dark matter searches, the dawn of the nuclear clocks

    Prof. Gilad Perez   |   Weizmann Institute of Science
    After a brief introduction related to ultralight (pseudo) scalar dark matter, we shall describe the current status of searches for ultralight dark matter (UDM). We explain why modern clocks can be used to search for both scalar and axion dark matter fields. We review existing and new types of well-motivated models of UDM and argue that they all share one key ingredient - their dominant coupling is to the QCD/nuclear sector. This is very exciting as we are amidst a revolution in the field of dark matter searches as laser excitation of Th-229 with effective precision of 1:10^13 has been recently achieved, which as we show, is already probing uncharted territory of models. Furthermore, Th-229-based nuclear clock can potentially improve the sensitivity to physics of dark matter and beyond by factor of 10^10! It has several important implications to be discussed.
  • Seminars
    Date:
    07
    July, 2024
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    What does the system “care about”? Empirical approaches to identifying biological regulation

    Prof. Naama Brenner   |   Dept. of Chemical Engineering & Network Biology Research Lab, Technion
    Biological systems regulate their action at multiple levels of organization, from molecular circuits to physiological function. This “homeostasis” maintains stability of the system in the face of external and internal perturbation. How exactly this is achieved remains a topic of ongoing investigation; challenges are high dimensionality, many coupled positive and negative feedback loops, conflicting regulation demands and interaction with the environment. Here I will introduce an empirical approach to the fundamental question – how do we know what it is that the system really “cares about”? What variable, or combination of variables, is under regulation? Two data-driven methods will be presented. one based on statistical analysis and applied to bacterial growth and division, revealing a hierarchy of regulation – from tightly regulated to sloppy variables. The second is based on a machine-learning algorithm we developed to identify regulation with minimal assumptions. This provides a different angle on the problem and highlights directions for future research. FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/
  • Seminars
    Date:
    23
    June, 2024
    Sunday
    Hour: 12:45-14:30

    The Clore Center for Biological Physics

    The role of sign indefinite invariants in shaping turbulent cascades.

    Michal Shavit,Postdoctoral fellow   |   Courant NYU
    Our work answers a nearly 60-year quest to derive the turbulent spectrum of weakly interacting internal gravity waves from first principles. The classical wave-turbulence approach didn’t work, as the underlying equation, both in 2D and 3D, is an anisotropic, non-canonical Hamiltonian equation. A key consequence of the non-canonical Hamiltonian is the conservation of a sign-indefinite quadratic invariant alongside the sign-definite quadratic energy. In 2D, this allows us to derive a much simpler kinetic equation. We leverage this simplification into the derivation of solutions of the kinetic equation, one of which is the turbulent spectrum of weakly interacting 2D internal gravity waves. Our spectrum exactly matches the phenomenological oceanic Garrett-Munk spectrum in the limit of large vertical wave numbers and zero rotation. This talk is based on recent joint works with Oliver Bühler and Jalal Shatah arXiv:2311.04183 (to appear soon in PRL). arXiv:2406.06010. FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/
  • Colloquia
    Date:
    20
    June, 2024
    Thursday
    Hour: 11:15-12:30

    Physics colloquium

    Stochastic resonance in polymer solution channel flow

    Prof. Victor Steinberg   |   Weizmann Institute of Science
    A cooperative resonance effect in a stochastic nonlinear dynamical system subjected to external weak periodic forcing, called stochastic resonance (SR), has been extensively studied for the past forty years. Here I discuss the experimentally unexpected observation of SR above an elastic non-modal instability of an inertia-less channel flow of polymer solution (much more complicated than stochastic dynamical flow) due to finite-size white noise perturbations. This flow is shown to be linearly stable similar to Newtonian parallel shear flow. First, I briefly describe viscoelastic flow with curved streamlines, where linear elastic normal mode instability at the critical Weissenberg number, Wic, has been observed and characterized, and the elastic instability mechanism has been explained and experimentally validated. Furthermore, at Wi>>Wic, “elastic turbulence” (ET), a chaotic flow arising via secondary instability, is experimentally discovered, characterized and theoretically explained, while elastic instability in straight channel flow is found from the direct transition from laminar to chaotic flow in the transition flow regime is found. At the secondary instability, ET is observed, and further on the next transition to the unexpected drag reduction flow regime takes place, accompanied by elastic waves previously discovered and characterized earlier. Moreover, we propose and experimentally validate a mechanism of amplification of the wall normal fluctuating vortices by the elastic waves. The elastic waves play the key role in the energy transfer from the main flow to the wall-normal fluctuating vortices. Finally, we report on recently discovered SRs only in a limited subrange of weak elastic waves just above Wic, their characterization, and their role in the transition to a chaotic flow.
  • Seminars
    Date:
    10
    June, 2024
    Monday
    Hour: 13:00-14:00

    The Clore Center for Biological Physics- Special seminar

    Mixing Artificial and Natural Intelligence: From Statistical Mechanics to AI and Back

    Dr. Michael (Misha) Chertkov   |   University of Arizona
    This presentation will outline recent evolution of AI methodologies, focusing on the emergence of Diffusion Models of AI inspired by non-equilibrium statistical mechanics, Transformers, and Reinforcement Learning. These innovations are revolutionizing our approach to reduced, Lagrangian turbulence modeling and are instrumental in formulating and solving new challenges, such as swimming navigation in chaotic environments. More generally, attendees will gain insights into the synergy between AI and natural sciences and understand how this symbiosis is shaping the future of scientific research. This comprehensive vision is relevant to theoretical physicists, applied mathematicians, and computer scientists alike.
  • Colloquia
    Date:
    10
    June, 2024
    Monday
    Hour: 11:15-12:30

    Physics Colloquium

    OBSERVATION OF FRACTIONAL QUANTUM ANOMALOUS HALL EFFECT

    Prof. Xiaodong Xu   |   University of Washington, Seattle, WA
    The interplay between spontaneous symmetry breaking and topology can result in exotic quantum states of matter. A celebrated example is the quantum anomalous Hall (QAH) effect, which exhibits an integer quantum Hall effect at zero magnetic field due to topologically nontrivial bands and intrinsic magnetism. In the presence of strong electron-electron interactions, fractional-QAH (FQAH) effect at zero magnetic field can emerge, which is a lattice analog of fractional quantum Hall effect without Landau level formation. In this talk, I will present experimental observation of FQAH effect in twisted MoTe2 bilayer, using combined magneto-optical and -transport measurements. In addition, we find an anomalous Hall state near the filling factor -1/2, whose behavior resembles that of the composite Fermi liquid phase in the half-filled lowest Landau level of a two-dimensional electron gas at high magnetic field. Direct observation of the FQAH and associated effects paves the way for researching charge fractionalization and anyonic statistics at zero magnetic field. Reference 1. Observation of Fractionally Quantized Anomalous Hall Effect, Heonjoon Park et al., Nature, https://www.nature.com/articles/s41586-023-06536-0 (2023); 2. Signatures of Fractional Quantum Anomalous Hall States in Twisted MoTe2 Bilayer, Jiaqi Cai et al., Nature, https://www.nature.com/articles/s41586-023-06289-w (2023); 3. Programming Correlated Magnetic States via Gate Controlled Moiré Geometry, Eric Anderson et al., Science, https://www.science.org/doi/full/10.1126/science.adg4268 (2023).
  • Colloquia
    Date:
    06
    June, 2024
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    Emergent Quantum Phenomena in Crystalline Multilayer Graphene

    Prof. Long Ju   |   MIT
    Condensed matter physics has witnessed emergent quantum phenomena driven by electron correlation and topology. Such phenomena have been mostly observed in conventional crystalline materials where flat electronic bands are available. In recent years, moiré superlattices built upon two-dimensional (2D) materials emerged as a new platform to engineer and study electron correlation and topology. In this talk, I will introduce a family of synthetic quantum materials, based on crystalline multilayer graphene, as a new platform to engineer and study emergent phenomena driven by many-body interactions. This system hosts flat-bands in highly ordered conventional crystalline materials and dresses them with proximity effects enabled by rich structures in 2D van der Waals heterostructures. As a result, a rich spectrum of emergent phenomena including correlated insulators, spin/valley-polarized metals, integer and fractional quantum anomalous Hall effects, as well as superconductivities have been observed in our experiments. I will also discuss the implications of these observations for topological quantum computation. References: [1] Han, T., Lu, Z., Scuri, G. et al. Nat. Nanotechnol. 19, 181–187 (2024). [2] Han, T., Lu, Z., Scuri, G. et al. Nature 623, 41–47 (2023). [3] Han, T., Lu, Z., Yao, Y. et al. Science 384,647-651(2024). [4] Lu, Z., Han, T., Yao, Y. et al. Nature 626, 759–764 (2024). [5] Yang, J., Chen, G., Han, T. et al. Science, 375(6586), pp.1295-1299. (2022)
  • Seminars
    Date:
    04
    June, 2024
    Tuesday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Flexoelectricity versus Electrostatics in Polar Nematic Liquid Crystals

    Prof. Jonathan Selinger   |   Kent State University
    In the most common phase of liquid crystals, called the nematic phase, molecules are aligned up or down along some axis, so that the net electrostatic polarization is zero. Recent experiments have found a new class of liquid crystals, called ferroelectric nematic, in which molecules align predominantly in one direction along the axis, leading to a nonzero polarization. From the perspective of statistical mechanics, the ferroelectric nematic phase has two special features. First, it has flexoelectricity, meaning that the polarization induces a splay of the molecular orientation. Second, the energy includes an electrostatic interaction, which favors a domain structure. In this talk, we discuss the competition between those two effects to control the phase behavior. FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/
  • Seminars
    Date:
    26
    May, 2024
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Phages vs bacteria warfare: co-evolution and intelligence gathering

    Prof. Yigal Meir   |   Ben-Gurion University
    The warfare between bacteria and phages - viruses that infect bacteria - has been raging for billions of years. During this time both sides have evolved various attack and defense systems. In this talk I will describe 3 related projects: 1. Is there an optimal number of such defense or anti-defense systems? 2. How can different phages which prey on the same bacteria co-exist, in contradiction with the expected competitive exclusion? 3. Some phages have developed the ability to garner environmental information, enabling them to make more "intelligent" decisions. How much is such intelligence worth, in terms of other resources? FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/
  • Colloquia
    Date:
    23
    May, 2024
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    Quantum Dot Physics Using Atomic Defects in Ultrathin Tunnel Barriers

    Prof. Hadar Steinberg   |   Hebrew University
    Quantum dots (QDs) are conducting regions which can localize few charge carriers, and where the energy spectrum is dominated by Coulomb repulsion. QDs can be as large as few hundreds of nanometers, or as small as a single molecule, their sizes depending on their physical realization – whether in two-dimensional materials, nanowires, molecular systems. In my talk I will describe our work on a new type of an atomically-sized QD, realized in defects residing in ultrathin two-dimensional insulators. These defect-dots are found in layered materials such as hexagonal Boron Nitride (hBN), which we study by their assembly into stacked devices. By using graphene electrodes, we are able to electronically couple to the QD, while allowing the QD energy to be externally tuned exploiting the penetration of electric field through graphene. A consequence of the structure of our devices is that the defect QDs are placed at atomic distance to the conductors on both sides. I will show how the presence of such energy-tunable, atomically sized QDs at nanometer proximity to other conducting systems opens new opportunities for sensitive measurements, including use of QDs as highly sensitive spectrometers [1], or as single electron transistors, unique in their sensitivity to local electric fields at the nanometer scale [2]. I will discuss our future prospects of using defect QDs as quantum sensors. References 1. Devidas, T.R., I. Keren, and H. Steinberg, Spectroscopy of NbSe2 Using Energy-Tunable Defect-Embedded Quantum Dots. Nano Letters, 2021. 21(16): p. 6931-6937. 2. Keren, I., et al., Quantum-dot assisted spectroscopy of degeneracy-lifted Landau levels in graphene. Nature Communications, 2020. 11(1): p. 3408.
  • Colloquia
    Date:
    16
    May, 2024
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    Toward Autonomous “Artificial Cells” in 2D

    Prof. Roy Bar-Ziv,Weizmann Institute of Science
    We study the assembly of programmable quasi-2D DNA compartments as “artificial cells” from the individual cellular level to multicellular communication. We will describe work on autonomous synthesis and assembly of cellular machines, collective modes of synchrony in a 2D lattice of ~1000 compartments, and a first look at the birth of proteins on a single DNA.
  • Colloquia
    Date:
    09
    May, 2024
    Thursday
    Hour: 11:15-12:30

    Physics colloquium

    Synergistic progress in plasmas: from fusion to astrophysics

    Prof. Julien Fuchs   |   Laboratoire pour l’Utilisation des Lasers Intenses, CNRS, Ecole polytechnique, France
    Over the last decade, several exciting directions have been initiated by laser-driven plasmas, e.g., compact particle accelerators, inertial fusion and laboratory astrophysics. The first has known rapid progress, in terms of current, energy, stability; fusion has gone through a historic step, with the news of ignition being achieved at NIF in 2022; and laboratory astrophysics has known also spectacular developments, demonstrating the possibility to perform fully scalable experiments relevant to various objects such as forming stars and supernovae. A particularly interesting aspect is that all these fields are strongly synergistic, i.e., that advances in one can push the others as well. I will present examples of such synergies, through recent results we have obtained in all these domains, and in particular how ultra-bright neutron beams can be developed using latest generation multi-PW lasers [1,2]. These could open interesting perspectives in terms of cargo inspection, but also for fusion plasma measurements. I will also show how fusion can benefit from external magnetization [3]. Finally, I will discuss advances in laboratory astrophysics, particularly the first-stage acceleration of ions leading to cosmic rays [4,5], understanding the universal nature of collimated outflows in the Universe [6], and probing the intricacy of 3D magnetic reconnection [7] [1] High-flux neutron generation by laser-accelerated ions from single-and double-layer targets, V Horný et al., Scientific Reports 12 (1), 19767, 2022 [2] Numerical investigation of spallation neutrons generated from petawatt-scale laser-driven proton beams, B Martinez et al., Matter and Radiation at Extremes 7 (2), 024401, 2022 [3] Dynamics of nanosecond laser pulse propagation and of associated instabilities in a magnetized underdense plasma, W. Yao et al., https://doi.org/10.48550/arXiv.2211.06036 [4] Laboratory evidence for proton energization by collisionless shock surfing, W Yao et al., Nature Physics 17 (10), 1177-1182, 2021 [5] Enhancement of the Nonresonant Streaming Instability by Particle Collisions, A Marret et al., Physical Review Letters 128 (11), 115101, 2022 [6] Laboratory disruption of scaled astrophysical outflows by a misaligned magnetic field, G Revet et al., Nature communications 12 (1), 762, 2021 [7] Laboratory evidence of magnetic reconnection hampered in obliquely interacting flux tubes, S Bolaños et al., Nature Communications 13 (1), 6426, 2022
  • Colloquia
    Date:
    11
    April, 2024
    Thursday
    Hour: 11:15-12:30

    Toward Autonomous “Artificial Cells” in 2D

    Physics colloquium

    Prof. Roy Bar-Ziv   |   Weizmann Institute of Science
    We study the assembly of programmable quasi-2D DNA compartments as “artificial cells”, from the individual cellular level to multicellular communication. We will describe work on autonomous synthesis and assembly of cellular machines, collective modes of synchrony in a 2D lattice of ~1000 compartments, and a first look at the birth of proteins on a single DNA.
  • Seminars
    Date:
    07
    April, 2024
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Odd Mechanical Screening: From Metamaterial to Continuum Mechanics of Disordered Solids

    Prof. Michael Moshe   |   Hebrew University in Jerusalem
    Holes in elastic metamaterials, defects in 2D curved crystals, localized plastic deformations in amorphous solids and T1 transitions in epithelial tissue, are typical realizations of stress-relaxation mechanisms in different solid-like structures, interpreted as mechanical screening. In this talk I will present a mechanical screening theory that generalizes classical theories of solids, and introduces new moduli that are missing from the classical theories. Contrary to its electrostatic analog, the screening theory in solids is richer even in the linear case, with multiple screening regimes, predicting qualitatively new mechanical responses. The theory is tested in different physical systems, including disordered granular solids that do not have a continuous mechanical description. These materials are shown to violate energy conservation and are best described by Odd-Screening: a screening model that does not derive from an energy function. Experiments reveal a mechanical response that is strictly different from classical solid theory and is completely consistent with our mechanical-screening theory. Finally, I will discuss the relevance of this theory to 3D solids and a new Hexatic-like state in 3D matter.
  • Colloquia
    Date:
    04
    April, 2024
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    The Rolling Stones, All Down the Line

    Prof. Tsvi Tlusti   |   UNIST
    Draw an arbitrary open curve on the plane and copy it multiple times to form a translationally invariant infinite trajectory. Then, incline the plane slightly and ask yourself: can one chisel a stone that will roll exactly down this infinite trajectory? We will examine this question in practice and theory. Intriguing links to optics and quantum systems will be discussed. Bringing a tennis ball or a baseball is always recommended. Eckmann et al. Tumbling downhill along a given curve. Am Math Soc Notices - in press. Sobolev et al. Solid-body trajectoids shaped to roll along desired pathways. Nature 2023.
  • Colloquia
    Date:
    21
    March, 2024
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    Fractional statistics of anyons in mesoscopic colliders

    In three-dimensional space, elementary particles are divided between fermions and bosons according to the properties of symmetry of the wave function describing the state of the system when two particles are exchanged. When exchanging two fermions, the wave function acquires a phase, φ=π. On the other hand, in the case of bosons, this phase is zero, φ=0. This difference leads to deeply distinct collective behaviors between fermions, which tend to exclude themselves, and bosons which tend to bunch together. The situation is different in two-dimensional systems which can host exotic quasiparticles, called anyons, which obey intermediate quantum statistics characterized by a phase φ varying between 0 and π [1,2]. For example in the fractional quantum Hall regime, obtained by applying a strong magnetic field perpendicular to a two-dimensional electron gas, elementary excitations carry a fractional charge [3,4] and have been predicted to obey fractional statistics [1,2] with an exchange phase φ=π/m (where m is an odd integer). Using metallic gates deposited on top of the electron gas, beam-splitters of anyon beams can be implemented. I will present how the fractional statistics of anyons can be revealed in collider geometries, where anyon sources are placed at the input of a beam-splitter [5,6]. The partitioning of anyon beams is characterized by the formation of packets of anyons at the splitter output. This results in the observation of strong negative correlations of the electrical current, which value is governed by the anyon fractional exchange phase φ [5,7]. [1] B. I. Halperin, Phys. Rev. Lett. 52, 1583–1586 (1984). [2] D. Arovas, J. R. Schrieffer, F. Wilczek, Phys. Rev. Lett. 53, 722–723 (1984). [3] R. de Picciotto et al., Nature 389, 162–164 (1997). [4] L. Saminadayar, D. C. Glattli, Y. Jin, B. Etienne, Phys. Rev. Lett. 79, 2526–2529 (1997) [5] B. Rosenow, I. P. Levkivskyi, B. I. Halperin, Phys. Rev. Lett. 116, 156802 (2016). [6] H. Bartolomei et al. Science 368, 173-177 (2020). [7] Lee, JY.M., Sim, HS, Nature Communications 13, 6660 (2022).
  • Seminars
    Date:
    17
    March, 2024
    Sunday
    Hour: 13:45-14:30

    The Clore Center for Biological Physics

    On plants and sounds: plants hearing and emitting airborne sounds

    Prof. Lilach Hadany   |   Faculty of Life Sciences, Tel-Aviv University
    The communication of plants with their environment is crucial for their survival. Plants are known to use light, odors, and touch to communicate with other organisms, including plants and animals. Yet, acoustic communication is almost unexplored in plants, despite its potential adaptive value. This is the topic of the current talk. We have started exploring plant bioacoustics - what plants hear, and what they “say”. I will describe two major projects: in the first we study plant hearing, testing the responses of flowers to sounds of pollinators; in the second we investigate plant sound emission - we have shown that different species of plants emit brief ultrasonic signals, especially under stress. Using AI we can interpret these sounds and identify plant species and stress condition from the sounds. Potential implications of these projects for plant ecology, evolution and agriculture will be discussed.
  • Colloquia
    Date:
    14
    March, 2024
    Thursday
    Hour: 11:15-12:30

    Physics Colloquium

    Failed Theories of Superconductivity

    Prof. Joerg Schmalian   |   KIT, Germany
    The microscopic theory of superconductivity was developed by John Bardeen, Leon N Cooper and J. Robert Schrieffer. It is among the most beautiful and outstanding achievements of modern scientific research. Almost half a century passed between the initial discovery of superconductivity by Kamerlingh Onnes and the theoretical explanation of the phenomenon. During the intervening years the brightest minds in theoretical physics tried and failed to develop a microscopic understanding of the effect. I will discuss some of those unsuccessful attempts to understand superconductivity. This not only demonstrates the extraordinary achievement made by formulating the BCS theory, but also illustrates that mistakes are a natural and healthy part of scientific discourse, and that inapplicable, even incorrect theories can turn out to be interesting and inspiring.
  • Seminars
    Date:
    03
    March, 2024
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    A Statistical Physics Approach to Bacteria under Strong Perturbations

    Prof. Nathalie Q. Balaban   |   Racah Institute of Physics, The Hebrew University
    Statistical physics successfully accounts for phenomena involving a large number of components using a probabilistic approach with predictions for collective properties of the system. While biological cells contain a very large number of interacting components, (proteins, RNA molecules, metabolites, etc.), the cellular network is understood as a particular, highly specific, choice of interactions shaped by evolution, and therefore difficultly amenable to a statistical physics description. Here we show that when a cell encounters an acute but non-lethal stress, its perturbed state can be modelled as random network dynamics. Strong perturbations may therefore reveal the dynamics of the underlying network that are amenable to a statistical physics description. We show that our experimental measurements of the recovery dynamics of bacteria from a strong perturbation can be described in the framework of physical aging in disordered systems (Kaplan Y. et al, Nature 2021). Further experiments on gene expression confirm predictions of the model. The predictive description of cells under and after strong perturbations should lead to new ways to fight bacterial infections, as well as the relapse of cancer after treatment.
  • Seminars
    Date:
    25
    February, 2024
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Tails and (boson) peaks in the glassy vibrational density of states

    Avraham Moriel   |   Princeton University - The Department of Mechanical and Aerospace Engineering
    Due to their intrinsic nonequilibrium and disordered nature, glasses feature low-frequency, nonphononic vibrations, in addition to phonons. These excess modes generate a peak —the boson peak— in the ratio of the vibrational density of state (VDoS) and Debye’s VDoS of phonons. Yet, the excess vibrations and the boson peak are not fully understood. After presenting the experimental evidence of the boson peak, we will discuss additional universal characteristics of glassy low frequency VDoS obtained through numerical simulations. We will then examine a recently analyzed mean-field model capturing the universal low-frequency glassy VDoS characteristics. Combining reanalyzed experimental data and computer simulations, we will observe that the same mean-field model also captures the origin, nature and properties of the boson peak, yielding a unified physical picture of the low-frequency VDoS spectra of glasses. FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/
  • Seminars
    Date:
    11
    February, 2024
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Tunable Architecture of Nematic Disclination Lines

    Dr. Hillel Aharoni   |   department of physics of complex systems
    In this talk, I introduce a theoretical framework to tailor three-dimensional defect line architecture in nematic liquid crystals. By drawing an analogy between nematic liquid crystals and magnetostatics, I will show quantitative predictions for the connectivity and shape of defect lines in a nematic confined between two thinly spaced glass substrates. I will demonstrate experimental and numerical verification of these predictions, and identify critical parameters that tune the disclination lines' curvature within an experimental setup, as well as non-dimensional parameters that allow matching experiments and simulations at different length scales. Our system provides both physical insight and powerful tools to induce desired shapes and shape changes of defect lines.
  • Seminars
    Date:
    04
    February, 2024
    Sunday
    Hour: 13:15-14:30

    The Clore Center for Biological Physics

    Multiscale Lattice Modeling and Simulations of Heterogeneous Membranes

    Prof. Oded Farago   |   Biomedical Engineering Department, BGU
    Mixtures of lipids and cholesterol (Chol) have been served as simple model systems for studying the biophysical principles governing the formation of liquid ordered raft domains in complex biological systems. These mixtures exhibit a rich phase diagram as a function of temperature and composition. Much of the focus in these studies has been given to the coexistence regime between liquid ordered and liquid disordered phases which resembles rafts floating in the sea of disordered lipids. In the talk, I will present a new lattice model of binary [1] and ternary [2, 3] mixtures containing saturated and unsaturated lipids, and Chol. Simulations of mixtures of thousands of lipids and cholesterol molecules on time scales of hundreds of microseconds show a very good agreement with experimental and atomistic simulation observations across multiple scale, ranging from the local distributions of lipids to the macroscopic phase diagram of such mixtures. Importantly, we find that the liquid ordered domains are highly heterogeneous and consist of Chol-poor hexagonally packed gel-like clusters surrounded by Chol-rich regions at the domain boundaries. The presence of such nano-domains within the liquid ordered regions appears as a characteristic feature of the liquid-ordered state, and makes the interpretation of scattering data ambiguous in mixtures not exhibiting macroscopic phase separation.
  • Seminars
    Date:
    28
    January, 2024
    Sunday
    Hour: 13:15-14:15

    The Clore Center for Biological Physics

    Some organizing principles behind microbial community dynamics

    Dr. Amir Erez -Racah   |   Institute of Physics of the Hebrew University of Jerusalem
    Microbial ecosystems, pivotal in global ecological stability, display a diverse array of species, influenced by complex interactions. When considering environments with changing nutrient levels, we have recently suggested an 'early bird' effect. This phenomenon, which results from changing nutrient levels, initial and fast uptake of resources confers an advantage, significantly altering microbial growth dynamics. In serial dilution cultures with varying nutrient levels, this effect leads to shifts in diversity, demonstrating that microbial communities do not adhere to a universal nutrient-diversity relationship. Using a consumer-resource, serial dilution modeling framework, we simulate scenarios of changing nutrient balance, such as variations in phosphorous availability in rainforest soils, to predict a possible lag in ecosystems response near a loss of diversity transition point. Lastly, we explore the notion of 'microbial debt', a form of the early bird advantage, where microbes initially grow rapidly at the cost of later growth or increased mortality. This dynamic, exemplified in both classical chemostat and serial dilution cultures, reveals that such debt can convey an advantage, with varying outcomes on community structure depending on the nature of the trade-off involved. Together, these studies illuminate some organizing principles behind microbial dynamics, balancing growth and survival in changing environments.
  • Seminars
    Date:
    21
    January, 2024
    Sunday
    Hour: 13:15-14:15

    The Clore Center for Biological Physics

    How informative are structures of dna-bound proteins for revealing binding mechanisms inside cells? the case of the Origin of Replication Complex (ORC)

    Prof. Naama Barkai,Prof. Naama Barkai   |   Department of Molecular Genetics- Faculty of Biochemistry
    The Origin Recognition Complex (ORC) seeds the replication-fork by binding DNA replication origins, which in budding yeast contain a 17bp DNA motif. High resolution structure of the ORC-DNA complex revealed two base-interacting elements: a disordered basic patch (Orc1-BP4) and an insertion helix (Orc4-IH). To define ORC elements guiding its DNA binding in-vivo, we mapped genomic locations of 38 designed ORC mutants. We revealed that different ORC elements guide binding at different motifs sites, and these correspond only partially to the structure- described interactions. In particular, we show that disordered basic patches are key for ORC-motif binding in-vivo, including one lacking from the structure. Finally i will discuss how those disordered elements, which insert into the minor-groove can still guide specific ORC-DNA recognition.
  • Seminars
    Date:
    14
    January, 2024
    Sunday
    Hour: 13:15-14:15

    The Clore Center for Biological Physics

    Kinetic Choreography: Exploring Protein-DNA Interactions Beyond Affinity & Specificity

    Prof. Koby Levy   |   Dept. of Chemical and structural Biology
    The kinetics of protein–DNA recognition, along with its thermodynamic properties, including affinity and specificity, play a central role in shaping biological function. Protein–DNA recognition kinetics are characterized by two key elements: the time taken to locate the target site amid various nonspecific alternatives; and the kinetics involved in the recognition process, which may necessitate overcoming an energetic barrier. In my presentation, I will describe the complexity of protein-DNA kinetics obtained from molecular coarse-grained simulations of various protein systems. The kinetics of protein-DNA recognition are influenced by various molecular characteristics, frequently necessitating a balance between kinetics and stability. Furthermore, protein-DNA recognition may undergo evolutionary optimization to accomplish optimal kinetics for ensuring proper cellular function.
  • Seminars
    Date:
    09
    January, 2024
    Tuesday
    Hour: 12:45-13:45

    Special Clore Seminar - Leenoy Meshulam

    Bridging scales in biological systems – from octopus skin to mouse brain

    Leenoy Meshulam   |   University of Washington, Seattle
    For an animal to perform any function, millions of cells in its body furiously interact with each other. Be it a simple computation or a complex behavior, all biological functions involve the concerted activity of many individual units. A theory of function must specify how to bridge different levels of description at different scales. For example, to predict the weather, it is theoretically irrelevant to follow the velocities of every molecule of air. Instead, we use coarser quantities of aggregated motion of many molecules, e.g., pressure fields. Statistical physics provides us with a theoretical framework to specify principled methods to systematically ‘move’ between descriptions of microscale quantities (air molecules) to macroscale ones (pressure fields). Can we hypothesize equivalent frameworks in living systems? How can we use descriptions at the level of cells and their connections to make precise predictions of complex phenomena My research group will develop theory, modeling and analysis for a comparative approach to discover generalizable forms of scale bridging across species and behavioral functions. In this talk, I will present lines of previous, ongoing, and proposed research that highlight the potential of this vision. I shall focus on two seemingly very different systems: mouse brain neural activity patterns, and octopus skin cells activity patterns. In the mouse, we reveal striking scaling behavior and hallmarks of a renormalization group- like fixed point governing the system. In the octopus, camouflage skin pattern activity is reliably confined to a (quasi-) defined dynamical space. Finally, I will touch upon the benefits of comparing across animals to extract principles of multiscale function in biological systems, and propose future directions to investigate how macroscale properties, such as memory or camouflage, emerge from microscale level activity of individual cells.
  • Seminars
    Date:
    07
    January, 2024
    Sunday
    Hour: 13:15-14:15

    Clore Seminar-Professor Jay Fineberg

    The Fundamental Physics of the Onset of Frictional Motion: How do laboratory earthquakes nucleate?

    Prof. Jay Fineberg
    Recent experiments have demonstrated that rapid rupture fronts, akin to earthquakes, mediate the transition to frictional motion. Moreover, once these dynamic rupture fronts (“laboratory earthquakes”) are created, their singular form, dynamics and arrest are well-described by fracture mechanics. Ruptures, however, need to be created within initially rough frictional interfaces, before they are able to propagate. This is the reason that “static friction coefficients” are not well-defined; frictional ruptures can nucleate for a wide range of applied forces. A critical open question is, therefore, how the nucleation of rupture fronts actually takes place. We experimentally demonstrate that rupture front nucleation is prefaced by extremely slow, aseismic, nucleation fronts. These nucleation fronts, which are often self-similar, are not described by our current understanding of fracture mechanics. The nucleation fronts emerge from initially rough frictional interfaces at well-defined stress thresholds, evolve at characteristic velocity and time scales governed by stress levels, and propagate within a frictional interface to form the initial rupture from which fracture mechanics take over. These results are of fundamental importance to questions ranging from earthquake nucleation and prediction to processes governing material failure.