1. Lama K., Peer R., Shlizerman L., Meir S., Doron-Faigenboim A., Sadka A., Aharoni A. & Flaishman M. A. (2020). Tissue-specific organic acid metabolism in reproductive and non-reproductive parts of the fig fruit is partially induced by pollination.  Physiologia Plantarum. 2020 Jan , 168 (1):133-147.
  2. Cohen H., Fedyuk V., Wang C., Wu S. & Aharoni A. (2020). SUBERMAN Regulates Developmental Suberization of the Arabidopsis Root Endodermis.  Plant Journal. 2020 Feb , .


  1. Korenblum E. & Aharoni A. (2019). Phytobiome metabolism: Beneficial soil microbes steer crop plants' secondary metabolism.  Pest Management Science. 2019 Sept , 75 (9):2378-2384.
  2. Fernie A. R. & Aharoni A. (2019). Pan-Genomic Illumination of Tomato Identifies Novel Gene-Trait Interactions.  Trends in Plant Science. 2019 Oct , 24 (10):882-884.
  3. Cardenas P. D., Sonawane P. D., Heinig U., Jozwiak A., Panda S., Abebie B., Kazachkova Y., Pliner M., Unger T., Wolf D., Ofner I., Vilaprinyo E., Meir S., Davydov O., Gal-On A., Burdman S., Giri A., Zamir D., Scherf T., Szymanski J., Rogachev I. & Aharoni A. (2019). Pathways to defense metabolites and evading fruit bitterness in genus Solanum evolved through 2-oxoglutarate-dependent dioxygenases.  Nature Communications. 2019 Nov , 10 .
  4. Schleyer G., Shahaf N., Ziv C., Dong Y., Meoded R. A., Helfrich E. J. N., Schatz D., Rosenwasser S., Rogachev I., Aharoni A., Piel J. & Vardi A. (2019). In plaque-mass spectrometry imaging of a bloom-forming alga during viral infection reveals a metabolic shift towards odd-chain fatty acid lipids.  Nature Microbiology. 2019 Mar , 4 (3):527-538.
  5. Noda-Garcia L., Davidi D., Korenblum E., Elazar A., Putintseva E., Aharoni A. & Tawfik D. S. (2019). Chance and pleiotropy dominate genetic diversity in complex bacterial environments.  Nature Microbiology. 2019 Jul , 4 (7):1221-1230.
  6. Barchi L., Pietrella M., Venturini L., Minio A., Toppino L., Acquadro A., Andolfo G., Aprea G., Avanzato C., Bassolino L., Comino C., Dal Molin A., Ferrarini A., Maor L. C., Portis E., Reyes-Chin-Wo S., Rinaldi R., Sala T., Scaglione D., Sonawane P., Tononi P., Almekias-Siegl E., Zago E., Ercolano M. R., Aharoni A., Delledonne M., Giuliano G., Lanteri S. & Rotino G. L. (2019). A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution.  Scientific Reports. 2019 Aug , 9 .
  7. Dong Y., Feldberg L. & Aharoni A. (2019). Miso: An R Package for Multiple Isotope Labeling Assisted Metabolomics Data Analysis.  Bioinformatics. 2019 Sept , 35 (18):3524-3526.
  8. Ganin H., Kemper N., Meir S., Rogachev I., Ely S., Massalha H., Mandabi A., Keren-Paz A., Shanzer A., Meijler M., Malitsky S., Aharoni A. & Kolodkin-Gal I. (2019). Indole derivatives maintain the status quo between beneficial biofilms and their plant hosts.  Molecular Plant-Microbe Interactions. 2019 Aug , 32 (8):1013-1025.
  9. Cohen H., Dong Y., Szymanski J., Lashbrooke J., Meir S., Almekias-Siegl E., Zeisler-Diehl V. V., Schreiber L. & Aharoni A. (2019). A Multilevel Study of Melon Fruit Reticulation Provides Insight into Skin Ligno-suberization Hallmarks.  Plant Physiology. 2019 Apr , 179 (4):1486-1501.
  10. Rosado-Souza L., Proost S., Moulin M., Bergmann S., Bocobza S. E., Aharoni A., Fitzpatrick T. B., Mutwil M., Fernie A. R. & Obata T. (2019). Appropriate Thiamin Pyrophosphate Levels Are Required for Acclimation to Changes in Photoperiod.  Plant Physiology. 2019 May , 180 (1):185-197.
  11. Battat M., Eitan A., Rogachev I., Hanhineva K., Fernie A., Tohge T., Beekwilder J. & Aharoni A. (2019). A MYB Triad Controls Primary and Phenylpropanoid Metabolites for Pollen Coat Patterning.  Plant Physiology. 2019 May , 180 (1):87-108.
  12. Polturak G. & Aharoni A. (2019). Advances and future directions in betalain metabolic engineering.  The New Phytologist. 2019 Jul , .
  13. Chen X., Shi L., Chen Y., Zhu L., Zhang D., Xiao S., Aharoni A., Shi J. & Xu J. (2019). Arabidopsis HSP70-16 is required for flower opening under normal or mild heat stress temperatures.  Plant, cell & environment. 2019 Apr , 42 (4):1190-1204.
  14. Tzfadia O., Bocobza S., Defoort J., Almekias-Siegl E., Panda S., Levy M., Storme V., Rombauts S., Adhemar D., Hadas J., Keren-Shaul, Van de Peer Y. & Aharoni A. (2019). Correction: The 'TranSeq' 3 '-end sequencing method for high-throughput transcriptomics and gene space refinement in plant genomes (vol 96, pg 223, 2018).  Plant Journal. 2019 Feb , 97 (4):796-796.
  15. Sweetlove L. J., Aharoni A. & Fernie A. R. (2019). Editorial: Introducing TPJ Fellowships for early stage Principal Investigators.  Plant Journal. 2019 Nov , 100 (3):435-435.
  16. Massalha H., Korenblum E., Shapiro O. H. & Aharoni A. (2019). Tracking Root Interactions System (TRIS) Experiment and Quality Control.  Bio-Protocol. 2019 Apr , 9 (8).


  1. Shahaf N., Aharoni A. & Rogachev I. (2018). A complete pipeline for generating a high-resolution LC-MS-Based reference mass spectra library.  . 2018 Jan , :193-206.
  2. Nadine Töpfer; Samuel m.d. Seaver; Asaph Aharoni (2018). Integration of plant metabolomics data with metabolic networks: Progresses and challenges.  . 2018 May , :297-310.
  3. Abraham Y., Dong Y., Aharoni A. & Elbaum R. (2018). Mapping of cell wall aromatic moieties and their effect on hygroscopic movement in the awns of stork’s bill.  Cellulose. 2018 Jul , 25 (7):3827-3841.
  4. Polturak G. & Aharoni A. (2018). "La Vie en Rose'': Biosynthesis, Sources, and Applications of Betalain Pigments.  Molecular Plant. 2018 Jan , 11 (1):7-22.
  5. Polturak G., Heinig U., Grossman N., Battat M., Leshkowitz D., Malitsky S., Rogachev I. & Aharoni A. (2018). Transcriptome and Metabolic Profiling Provides Insights into Betalain Biosynthesis and Evolution in Mirabilis jalapa.  Molecular Plant. 2018 Jan , 11 (1):189-204.
  6. Feldberg L., Dong Y., Heinig U., Rogachev I. & Aharoni A. (2018). DLEMMA-MS-Imaging for Identification of Spatially Localized Metabolites and Metabolic Network Map Reconstruction.  Analytical Chemistry. 2018 Sept , 90 (17):10231-10238.
  7. David S., Mandabi A., Uzi S., Aharoni A. & Meijler M. M. (2018). Mining Plants for Bacterial Quorum Sensing Modulators.  ACS Chemical Biology. 2018 Jan , 13 (1):247-252.
  8. Saper G., Kallmann D., Conzuelo F., Zhao F., Tóth T. N., Liveanu V., Meir S., Szymanski J., Aharoni A., Schuhmann W., Rothschild A., Schuster G. & Adir N. (2018). Live cyanobacteria produce photocurrent and hydrogen using both the respiratory and photosynthetic systems.  Nature Communications. 2018 Jun , 9 :2168.
  9. Sonawane P. D., Heinig U., Panda S., Gilboa N. S., Yona M., Kumar S. P., Alkan N., Unger T., Bocobza S., Pliner M., Malitsky S., Tkachev M., Meir S., Rogachev I. & Aharoni A. (2018). Short-chain dehydrogenase/reductase governs steroidal specialized metabolites structural diversity and toxicity in the genus Solanum.  Proceedings of the National Academy of Sciences of the United States of America. 2018 Jun , 115 (23):E5419-E5428.
  10. Shinde B. A., Dholakia B. B., Hussain K., Aharoni A., Giri A. P. & Kamble A. C. (2018). WRKY1 acts as a key component improving resistance against Alternaria solani in wild tomato, Solanum arcanum Peralta.  Plant Biotechnology Journal. 2018 Aug , 16 (8):1502-1513.
  11. Dahan-Meir T., Filler-Hayut S., Melamed-Bessudo C., Bocobza S., Czosnek H., Aharoni A. & Levy A. A. (2018). Efficient in planta gene targeting in tomato using geminiviral replicons and the CRISPR/Cas9 system.  Plant Journal. 2018 Jul , 95 (1):5-16.
  12. Tzfadia O., Bocobza S., Defoort J., Almekias-Siegl E., Panda S., Levy M., Storme V., Rombauts S., Jaitin D. A., Keren-Shaul H., Van de Peer Y. & Aharoni A. (2018). The 'TranSeq' 3 '-end sequencing method for high-throughput transcriptomics and gene space refinement in plant genomes.  Plant Journal. 2018 Oct , 96 (1):223-232.
  13. Barak-Gavish N., Frada M. J., Ku C., Lee P. A., DiTullio G. R., Malitsky S., Aharoni A., Green S. J., Rotkopf R., Kartvelishvily E., Sheyn U., Schatz D. & Vardi A. (2018). Bacterial virulence against an oceanic bloom-forming phytoplankter is mediated by algal DMSP.  Science advances. 2018 Oct , 4 (10).
  14. Chen S., Lin J., Liu H., Gong Z., Wang X., Li M., Aharoni A., Yang Z. & Yu X. (2018). Insights into Tissue-specific Specialized Metabolism in Tieguanyin Tea Cultivar by Untargeted Metabolomics.  Molecules. 2018 Jul , 23 (7).


  1. Shinde B. A., Dholakia B. B., Hussain K., Panda S., Meir S., Rogachev I., Aharoni A., Giri A. P. & Kamble A. C. (2017). Dynamic metabolic reprogramming of steroidal glycol-alkaloid and phenylpropanoid biosynthesis may impart early blight resistance in wild tomato (Solanum arcanum Peralta).  Plant Molecular Biology. 2017 Nov , 95 (4-5):411-423.
  2. Cohen H., Szymanski J. & Aharoni A. (2017). Assimilation of `omics' strategies to study the cuticle layer and suberin lamellae plants.  Journal of Experimental Botany. 2017 Aug , 68 (19, SI):5389-5400.
  3. Topfer N., Fuchs L. & Aharoni A. (2017). The PhytoClust tool for metabolic gene clusters discovery in plant genomes.  Nucleic Acids Research. 2017 Jul , 45 (12):7049-7063.
  4. Cohen H., Hacham Y., Panizel I., Rogachev I., Aharoni A. & Amir R. (2017). Repression of CYSTATHIONINE gamma-SYNTHASE in Seeds Recruits the S-Methylmethionine Cycle.  Plant Physiology. 2017 Jul , 174 (3):1322-1333.
  5. Nir I., Shohat H., Panizel I., Olszewski N., Aharoni A. & Weiss D. (2017). The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.  Plant Cell. 2017 Dec , 29 (12):3186-3197.
  6. Szymanski J., Levin Y., Savidor A., Breitel D., Chappell-Maor L., Heinig U., Toepfer N. & Aharoni A. (2017). Label-free deep shotgun proteomics reveals protein dynamics during tomato fruit tissues development.  Plant Journal. 2017 Apr , 90 (2):396-417.
  7. Treves H., Murik O., Kedem I., Eisenstadt D., Meir S., Rogachev I., Szymanski J., Keren N., Orf I., Tiburcio A. F., Alcazar R., Aharoni A., Kopka J. & Kaplan A. (2017). Metabolic Flexibility Underpins Growth Capabilities of the Fastest Growing Alga.  Current Biology. 2017 Aug , 27 (16):2559-+.
  8. Miettinen K., Pollier J., Buyst D., Arendt P., Csuk R., Sommerwerk S., Moses T., Mertens J., Sonawane P. D., Pauwels L., Aharoni A., Martins J., Nelson D. R. & Goossens A. (2017). The ancient CYP716 family is a major contributor to the diversification of eudicot triterpenoid biosynthesis.  Nature Communications. 2017 Feb , 8 .
  9. Sonawane P. D., Pollier J., Panda S., Szymanski J., Massalha H., Yona M., Unger T., Malitsky S., Arendt P., Pauwels L., Almekias-Siegl E., Rogachev I., Meir S., Cardenas P. D., Masri A., Petrikov M., Schaller H., Schaffer A. A., Kamble A., Giri A. P., Goossens A. & Aharoni A. (2017). Plant cholesterol biosynthetic pathway overlaps with phytosterol metabolism.  Nature Plants. 2017 Jan , 3 (1).
  10. Massalha H., Korenblum E., Malitsky S., Shapiro O. H. & Aharoni A. (2017). Live imaging of root-bacteria interactions in a microfluidics setup.  Proceedings of the National Academy of Sciences of the United States of America. 2017 Apr , 114 (17):4549-4554.
  11. Polturak G., Grossman N., Vela-Corcia D., Dong Y., Nudel A., Pliner M., Levy M., Rogachev I. & Aharoni A. (2017). Engineered gray mold resistance, antioxidant capacity, and pigmentation in betalain-producing crops and ornamentals.  Proceedings of the National Academy of Sciences of the United States of America. 2017 Aug , 114 (34):9062-9067.
  12. Fernandez-Moreno J., Levy-Samoha D., Malitsky S., Monforte A. J., Orzaez D., Aharoni A. & Granell A. (2017). Uncovering tomato quantitative trait loci and candidate genes for fruit cuticular lipid composition using the Solanum pennellii introgression line population.  Journal of Experimental Botany. 2017 May , 68 (11):2703-2716.
  13. Paudel J. R., Davidson C., Song J., Maxim I., Aharoni A. & Tai H. H. (2017). Pathogen and Pest Responses Are Altered Due to RNAi-Mediated Knockdown of GLYCOALKALOID METABOLISM 4 in Solanum tuberosum.  Molecular Plant-Microbe Interactions. 2017 Nov , 30 (11):876-885.
  14. Zhu X., Yu J., Shi J., Tohge T., Fernie A. R., Meir S., Aharoni A., Xu D., Zhang D. & Liang W. (2017). The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice.  Journal of Integrative Plant Biology. 2017 Sept , 59 (9):612-628.
  15. Markovich O., Steiner E., Kouril S., Tarkowski P., Aharoni A. & Elbaum R. (2017). Silicon promotes cytokinin biosynthesis and delays senescence in Arabidopsis and Sorghum.  Plant Cell And Environment. 2017 Jul , 40 (7):1189-1196.
  16. Massalha H., Korenblum E., Tholl D. & Aharoni A. (2017). Small molecules below-ground: the role of specialized metabolites in the rhizosphere.  Plant Journal. 2017 May , 90 (4):788-807.


  1. Thaiss C. A., Itav S., Rothschild D., Meijer M. T., Levy M., Moresi C., Dohnalová L., Braverman S., Rozin S., Malitsky S., Dori-Bachash M., Kuperman Y., Biton I., Gertler A., Harmelin A., Shapiro H., Halpern Z., Aharoni A., Segal E. & Elinav E. (2016). Persistent microbiome alterations modulate the rate of post-dieting weight regain.  Nature. 2016 Dec , 540 (7634):544-551.
  2. Hen Avivi A. S., Savin O., Racovita R. C., Lee W., Adamski N. M., Malitsky S., Almekias-Siegl E., Levy M., Vautrin S., Berges H., Friedlander G., Kartvelishvily E., Ben-Zvi G., Alkan N., Uauy C., Kanyuka K., Jetter R., Distelfeld A. & Aharoni A. (2016). A Metabolic Gene Cluster in the Wheat W1 and the Barley Cer-cqu Loci Determines beta-Diketone Biosynthesis and Glaucousness.  Plant Cell. 2016 Jun , 28 (6):1440-1460.
  3. Lashbrooke J., Cohen H., Levy-Samocha D., Tzfadia O., Panizel I., Zeisler V., Massalha H., Stern A., Trainotti L., Schreiber L., Costa F. & Aharoni A. (2016). MYB107 and MYB9 Homologs Regulate Suberin Deposition in Angiosperms.  Plant Cell. 2016 Sept , 28 (9):2097-2116.
  4. Aharoni A. (2016). Nature's palette: biosynthesis, regulation and metabolic engineering of betalain pigments.  FEBS Journal. 2016 Sept , 283 :51-51.
  5. Malitsky S., Ziv C., Rosenwasser S., Zheng S., Schatz D., Porat Z., Ben-Dor S., Aharoni A. & Vardi A. (2016). Viral infection of the marine alga Emiliania huxleyi triggers lipidome remodeling and induces the production of highly saturated triacylglycerol.  New Phytologist. 2016 Apr , 210 (1):88-96.
  6. Xie Q., Liu Z., Meir S., Rogachev I., Aharoni A., Klee H. J. & Galili G. (2016). Altered metabolite accumulation in tomato fruits by coexpressing a feedback-insensitive AroG and the PhODO1 MYB-type transcription factor.  Plant Biotechnology Journal. 2016 Dec , 14 (12):2300-2309.
  7. Fernandez-Moreno J., Malitsky S., Lashbrooke J., Biswal A., Racovita R., Mellerowicz E., Jetter R., Orzaez D., Aharoni A. & Granell A. (2016). An efficient method for medium throughput screening of cuticular wax composition in different plant species.  Metabolomics. 2016 Apr , 12 (4).
  8. Racovita R. C., Hen Avivi A. S., Fernandez-Moreno J., Granell A., Aharoni A. & Jetter R. (2016). Composition of cuticular waxes coating flag leaf blades and peduncles of Triticum aestivum cv. Bethlehem.  Phytochemistry. 2016 Oct , 130 :182-192.
  9. Dong Y., Li B. & Aharoni A. (2016). More than Pictures: When MS Imaging Meets Histology.  Trends in Plant Science. 2016 Aug , 21 (8):686-698.
  10. Cardenas P. D., Sonawane P. D., Pollier J., Vanden Bossche B. R., Dewangan V., Weithorn E., Tal L., Meir S., Rogachev I., Malitsky S., Giri A. P., Goossens A., Burdman S. & Aharoni A. (2016). Game9 Regulates The Biosynthesis Of Steroidal Alkaloids And Upstream Isoprenoids In The Plant Mevalonate Pathway.  Nature Communications. 2016 Feb , 7 .
  11. Shahaf N., Rogachev I., Heinig U., Meir S., Malitsky S., Battat M., Wyner H., Zheng S., Wehrens R. & Aharoni A. (2016). The WEIZMASS spectral library for high-confidence metabolite identification..  Nature Communications. 2016, 7 :12423.
  12. Polturak G., Breitel D., Sarrion-Perdigones A., Grossman N., Weithorn E., Pliner M., Orzaez D., Granell A., Rogachev I. & Aharoni A. (2016). Elucidation of the first step in betalain biosynthesis allows the heterologous production of betalain pigments in plants.  Planta Medica. 2016 Dec , 82 .
  13. Ziv C., Malitsky S., Othman A., Ben-Dor S., Wei Y., Zheng S., Aharoni A., Hornemann T. & Vardi A. (2016). Viral serine palmitoyltransferase induces metabolic switch in sphingolipid biosynthesis and is required for infection of a marine alga..  Proceedings of the National Academy of Sciences of the United States of America. 2016 Mar , 113 (13):E1907-16.
  14. Fernandez-Moreno J., Tzfadia O., Forment J., Presa S., Rogachev I., Meir S., Orzaez D., Aharoni A. & Granell A. (2016). Characterization of a New Pink-Fruited Tomato Mutant Results in the Identification of a Null Allele of the SlMYB12 Transcription Factor.  Plant Physiology. 2016 Jul , 171 (3):1821-1836.
  15. Polturak G., Breitel D., Grossman N., Sarrion-Perdigones A., Weithorn E., Pliner M., Orzaez D., Granell A., Rogachev I. & Aharoni A. (2016). Elucidation of the first committed step in betalain biosynthesis enables the heterologous engineering of betalain pigments in plants.  New Phytologist. 2016 Apr , 210 (1):269-283.
  16. Ofner I., Lashbrooke J., Pleban T., Aharoni A. & Zamir D. (2016). Solanum pennellii backcross inbred lines (BILs) link small genomic bins with tomato traits.  Plant Journal. 2016 Jul , 87 (2):151-160.
  17. Breitel D. A., Chappell-Maor L., Meir S., Panizel I., Puig C. P., Hao Y., Yifhar T., Yasuor H., Zouine M., Bouzayen M., Richart A. G., Rogachev I. & Aharoni A. (2016). AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.  PLoS Genetics. 2016 Mar , 12 (3).
  18. Tzfadia O., Diels T., De Meyer M. S., Vandepoele K., Aharoni A. & Van de Peer d. P. Y. (2016). CoExpNetViz: Comparative Co-Expression Networks Construction and Visualization Tool.  Frontiers in Plant Science. 2016 Jan , 6 .
  19. Dong Y., Li B., Malitsky S., Rogachev L., Aharoni A., Kaftan F., Svatos A. & Franceschi P. (2016). Sample Preparation for Mass Spectrometry Imaging of Plant Tissues: A Review.  Frontiers in Plant Science. 2016 Feb , 7 .


  1. Malitsky S., Rogachev I., Aharoni A. & Tishbee A. (2015). UHPLC-qTOF-MS, and SFC-qTOF-MS, combined with traveling wave ion mobility, enables a more comprehensive and reliable analysis, of plant metabolites.  Planta Medica. 2015 Nov , 81 (16):1410-1410.
  2. Livne S., Lor V. S., Nir I., Eliaz N., Aharoni A., Olszewski N. E., Eshed Y. & Weiss D. (2015). Uncovering DELLA-Independent Gibberellin Responses by Characterizing New Tomato procera Mutants.  Plant Cell. 2015 Jun , 27 (6):1579-1594.
  3. Zwighaft Z., Aviram R., Shalev M., Rousso Noori N. L., Kraut-Cohen J., Golik M., Brandis A., Reinke H., Aharoni A., Kahana C. & Asher G. (2015). Circadian Clock Control by Polyamine Levels through a Mechanism that Declines with Age..  Cell Metabolism. 2015 Nov , 22 (5):874-85.
  4. Cárdenas P. D., Sonawane P. D., Heinig U., Bocobza S. E., Burdman S. & Aharoni A. (2015). The bitter side of the nightshades: Genomics drives discovery in Solanaceae steroidal alkaloid metabolism.  Phytochemistry. 2015 May , 113 :24-32.
  5. Lashbrooke J., Aharoni A. & Costa F. (2015). Genome investigation suggests MdSHN3, an APETALA2-domain transcription factor gene, to be a positive regulator of apple fruit cuticle formation and an inhibitor of russet development..  Journal of Experimental Botany. 2015, .
  6. Lashbrooke J., Adato A., Lotan O., Alkan N., Tsimbalist T., Rechav K., Fernandez-Moreno J., Widemann E., Grausem B., Pinot F., Granell A., Costa F. & Aharoni A. (2015). The Tomato MIXTA-Like Transcription Factor Coordinates Fruit Epidermis Conical Cell Development and Cuticular Lipid Biosynthesis and Assembly..  Plant Physiology. 2015 Oct , 169 (4):2553-71.
  7. Vunsh R., Heinig U., Malitsky S., Aharoni A., Avidov A., Lerner A. & Edelman M. (2015). Manipulating duckweed through genome duplication.  Plant Biology. 2015 Jan , 17 :115-119.
  8. Xie L., Chen Q., Chen M., Yu L., Huang L., Chen L., Wang F., Xia F., Zhu T., Wu J., Yin J., Liao B., Shi J., Zhang J., Aharoni A., Yao N., Shu W. & Xiao S. (2015). Unsaturation of Very-Long-Chain Ceramides Protects Plant from Hypoxia-Induced Damages by Modulating Ethylene Signaling in Arabidopsis.  PLoS Genetics. 2015 Mar , 11 (3).
  9. Hao Y., Hu G., Breitel D., Liu M., Mila I., Frasse P., Fu Y., Aharoni A., Bouzayen M. & Zouine M. (2015). Auxin Response Factor SlARF2 Is an Essential Component of the Regulatory Mechanism Controlling Fruit Ripening in Tomato.  PLoS Genetics. 2015 Dec , 11 (12).


  1. Lashbrooke J., Costa F. & Aharoni A. (2014). Making the Surface of Fleshy Fruit: Biosynthesis, Assembly and Role of the Cuticular Layer.  . 2014, :81-98.
  2. Heinig U. & Aharoni A. (2014). Analysis of Steroidal Alkaloids and Saponins in Solanaceae Plant Extracts Using UPLC-qTOF Mass Spectrometry.  . 2014 Mar , :171-185.
  3. Rosenwasser S., van Creveld C. S. G., Schatz D., Malitsky S., Tzfadia O., Aharoni A., Levin Y., Gabashvili A., Feldmesser E. & Vardi A. (2014). Mapping the diatom redox-sensitive proteome provides insight into response to nitrogen stress in the marine environment.  Proceedings of the National Academy of Sciences of the United States of America. 2014 Feb , 111 (7):2740-2745.
  4. Buxdorf K., Rubinsky G., Barda O., Burdman S., Aharoni A. & Levy M. (2014). The transcription factor SlSHINE3 modulates defense responses in tomato plants.  Plant Molecular Biology. 2014 Jan , 84 (2-Jan):37-47.
  5. Cohen S., Itkin M., Yeselson Y., Tzuri G., Portnoy V., Harel-Baja R., Lev S., Sa'ar U., Davidovitz-Rikanati R., Baranes N., Bar E., Wolf D., Petreikov M., Shen S., Ben-Dor S., Rogachev I., Aharoni A., Ast T., Schuldiner M., Belausov E., Eshed R., Ophir R., Sherman A., Frei B., Neuhaus H. E., Xu Y., Fei Z., Giovannoni J., Lewinsohn E., Tadmor Y., Paris H. S., Katzir N., Burger Y. & Schaffer A. A. (2014). The PH gene determines fruit acidity and contributes to the evolution of sweet melons.  Nature Communications. 2014 Jun , 5 .
  6. Hen Avivi A. S., Lashbrooke J., Costa F. & Aharoni A. (2014). Scratching the surface: genetic regulation of cuticle assembly in fleshy fruit.  Journal of Experimental Botany. 2014 Aug , 65 (16):4653-4664.
  7. Rosenwasser S., Mausz M. A., Schatz D., Sheyn U., Malitsky S., Aharoni A., Weinstock E., Tzfadia O., Ben-Dor S., Feldmesser E., Pohnert G. & Vardi A. (2014). Rewiring Host Lipid Metabolism by Large Viruses Determines the Fate of Emiliania huxleyi, a Bloom-Forming Alga in the Ocean.  Plant Cell. 2014 Jun , 26 (6):2689-2707.
  8. Bocobza S. E. & Aharoni A. (2014). Small molecules that interact with RNA: riboswitch-based gene control and its involvement in metabolic regulation in plants and algae.  Plant Journal. 2014 Aug , 79 (4):693-703.
  9. Tholl D. & Aharoni A. (2014). Small molecules: from structural diversity to signalling and regulatory roles.  Plant Journal. 2014 Aug , 79 (4):541-543.
  10. Roldan M. V. G., Outchkourov N., van Houwelingen H. A., Lammers M., de la Fuente l. F. I. R., Ziklo N., Aharoni A., Hall R. D. & Beekwilder J. (2014). An O-methyltransferase modifies accumulation of methylated anthocyanins in seedlings of tomato.  Plant Journal. 2014 Nov , 80 (4):695-708.
  11. Mizzotti C., Ezquer I., Paolo D., Rueda-Romero P., Guerra R. F., Battaglia R., Rogachev I., Aharoni A., Kater M. M., Caporali E. & Colombo L. (2014). SEEDSTICK is a Master Regulator of Development and Metabolism in the Arabidopsis Seed Coat.  PLoS Genetics. 2014 Dec , 10 (12).


  1. Markovich O., Kafle D., Elbaz M., Malitsky S., Aharoni A., Schwarzkopf A., Gershenzon J. & Morin S. (2013). Arabidopsis thaliana Plants with Different Levels of Aliphatic- and Indolyl-Glucosinolates Affect Host Selection and Performance of Bemisia tabaci.  Journal of Chemical Ecology. 2013 Dec , 39 (12-Nov):1361-1372.
  2. Heinig U., Gutensohn M., Dudareva N. & Aharoni A. (2013). The challenges of cellular compartmentalization in plant metabolic engineering.  Current Opinion in Biotechnology. 2013 Apr , 24 (2):239-246.
  3. Moussaieff A., Rogachev I., Brodsky L., Malitsky S., Toal T. W., Belcher H., Yativ M., Brady S. M., Benfey P. N. & Aharoni A. (2013). High-resolution metabolic mapping of cell types in plant roots.  Proceedings of the National Academy of Sciences of the United States of America. 2013 Mar , 110 (13):E1232-E1241.
  4. Tzin V., Rogachev I., Meir S., Ben Zvi Z. M. M., Masci T., Vainstein A., Aharoni A. & Galili G. (2013). Tomato fruits expressing a bacterial feedback-insensitive 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase of the shikimate pathway possess enhanced levels of multiple specialized metabolites and upgraded aroma.  Journal of Experimental Botany. 2013 Nov , 64 (14):4441-4452.
  5. Bocobza S. E., Malitsky S., Araujo W. L., Nunes-Nesi A., Meir S., Shapira M., Fernie A. R. & Aharoni A. (2013). Orchestration of Thiamin Biosynthesis and Central Metabolism by Combined Action of the Thiamin Pyrophosphate Riboswitch and the Circadian Clock in Arabidopsis.  Plant Cell. 2013 Jan , 25 (1):288-307.
  6. Itkin M., Heinig U., Tzfadia O., Bhide A. J., Shinde B. A., Cardenas P. D., Bocobza S. E., Unger T., Malitsky S., Finkers R., Tikunov Y., Bovy A., Chikate Y. R., Singh P., Rogachev I., Beekwilder J., Giri A. P. & Aharoni A. (2013). Biosynthesis of Antinutritional Alkaloids in Solanaceous Crops Is Mediated by Clustered Genes.  Science. 2013 Jul , 341 (6142):175-179.
  7. Sela D., Buxdorf K., Shi J., Feldmesser E., Schreiber L., Aharoni A. & Levy M. (2013). Overexpression of AtSHN1/WIN1 Provokes Unique Defense Responses.  PLoS One. 2013 Jul , 8 (7).


  1. Ehret D. L., Frey B., Helmer T., Aharoni A., Wang Z. & Jetter R. (2012). Fruit cuticular and agronomic characteristics of a lecer6 mutant of tomato.  Journal Of Horticultural Science & Biotechnology. 2012 Nov , 87 (6):619-625.
  2. Rogachev I. & Aharoni A. (2012). UPLC-MS-based metabolite analysis in tomato.  . 2012 Mar , :129-144.
  3. Cohen S., Tzuri G., Harel-Beja R., Itkin M., Portnoy V., Sa'ar U., Lev S., Yeselson L., Petrikov M., Rogachev I., Aharoni A., Ophir R., Tadmor Y., Lewinsohn E., Burger Y., Katzir N. & Schaffer A. A. (2012). Co-mapping studies of QTLs for fruit acidity and candidate genes of organic acid metabolism and proton transport in sweet melon (Cucumis melo L.).  Theoretical And Applied Genetics. 2012 Jul , 125 (2):343-353.
  4. Brand A., Borovsky Y., Meir S., Rogachev I., Aharoni A. & Paran I. (2012). pc8.1, a major QTL for pigment content in pepper fruit, is associated with variation in plastid compartment size.  Planta. 2012 Mar , 235 (3):579-588.
  5. Hanhineva K., Rogachev I., Aura A., Aharoni A., Poutanen K. & Mykkanen H. (2012). Identification of novel lignans in the whole grain rye bran by non-targeted LC-MS metabolite profiling.  Metabolomics. 2012 Jun , 8 (3):399-409.
  6. Mintz-Oron S., Meir S., Malitsky S., Ruppin E., Aharoni A. & Shlomi T. (2012). Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity.  Proceedings of the National Academy of Sciences of the United States of America. 2012 Jan , 109 (1):339-344.
  7. Bocobza S., Willmitzer L., Raikhel N. V. & Aharoni A. (2012). Discovery of New Modules in Metabolic Biology Using ChemoMetabolomics.  Plant Physiology. 2012 Nov , 160 (3):1160-1163.
  8. Elbaz M., Halon E., Malka O., Malitsky S., Blum E., Aharoni A. & Morin S. (2012). Asymmetric adaptation to indolic and aliphatic glucosinolates in the B and Q sibling species of Bemisia tabaci (Hemiptera: Aleyrodidae).  Molecular Ecology. 2012 Sept , 21 (18):4533-4546.
  9. Rogers E. D., Jackson T., Moussaieff A., Aharoni A. & Benfey P. N. (2012). Cell type-specific transcriptional profiling: implications for metabolite profiling.  Plant Journal. 2012 Apr , 70 (1):5-17.
  10. Aharoni A. & Brandizzi F. (2012). High-Resolution Measurements in Plant Biology.  Plant Journal. 2012 Apr , 70 (1):1-4.
  11. Tzin V., Malitsky S., Ben Zvi Z. M. M., Bedair M., Sumner L., Aharoni A. & Galili G. (2012). Expression of a bacterial feedback-insensitive 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase of the shikimate pathway in Arabidopsis elucidates potential metabolic bottlenecks between primary and secondary metabolism.  New Phytologist. 2012 Apr , 194 (2):430-439.
  12. Hanhineva K., Aura A., Rogachev I., Matero S., Skov T., Aharoni A., Poutanen K. & Mykkanen H. (2012). In Vitro Microbiotic Fermentation Causes an Extensive Metabolite Turnover of Rye Bran Phytochemicals.  PLoS One. 2012 Jun , 7 (6).


  1. Rosado A., Hicks G. R., Norambuena L., Rogachev I., Meir S., Pourcel L., Zouhar J., Brown M. Q., Boirsdore M. P., Puckrin R. S., Cutler S. R., Rojo E., Aharoni A. & Raikhel N. V. (2011). Sortin1-Hypersensitive Mutants Link Vacuolar-Trafficking Defects and Flavonoid Metabolism in Arabidopsis Vegetative Tissues.  Chemistry & Biology. 2011 Feb , 18 (2):187-197.
  2. Aharoni A. & Galili G. (2011). Metabolic engineering of the plant primary-secondary metabolism interface.  Current Opinion in Biotechnology. 2011 Apr , 22 (2):239-244.
  3. Hanhineva K., Rogachev I., Aura A., Aharoni A., Poutanen K. & Mykkanen H. (2011). Qualitative Characterization of Benzoxazinoid Derivatives in Whole Grain Rye and Wheat by LC-MS Metabolite Profiling.  Journal of Agricultural and Food Chemistry. 2011 Feb , 59 (3):921-927.
  4. Sakurai N., Ara T., Ogata Y., Sano R., Ohno T., Sugiyama K., Hiruta A., Yamazaki K., Yano K., Aoki K., Aharoni A., Hamada K., Yokoyama K., Kawamura S., Otsuka H., Tokimatsu T., Kanehisa M., Suzuki H. & Saito K. (2011). KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data.  Nucleic Acids Research. 2011 Jan , 39 :D677-D684.
  5. Fernie A. R., Aharoni A., Willmitzer L., Stitt M., Tohge T., Kopka J., Carroll A. J., Saito K., Fraser P. D. & DeLuca V. (2011). Recommendations for Reporting Metabolite Data.  Plant Cell. 2011 Jul , 23 (7):2477-2482.
  6. Itkin M., Rogachev I., Alkan N., Rosenberg T., Malitsky S., Masini L., Meir S., Iijima Y., Aoki K., de Vos V. R., Prusky D., Burdman S., Beekwilder J. & Aharoni A. (2011). GLYCOALKALOID METABOLISM1 Is Required for Steroidal Alkaloid Glycosylation and Prevention of Phytotoxicity in Tomato.  Plant Cell. 2011 Dec , 23 (12):4507-4525.
  7. Matas A. J., Yeats T. H., Buda G. J., Zheng Y., Chatterjee S., Tohge T., Ponnala L., Adato A., Aharoni A., Stark R., Fernie A. R., Fei Z., Giovannoni J. J. & Rose J. K. C. (2011). Tissue- and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation.  Plant Cell. 2011 Nov , 23 (11):3893-3910.
  8. Vandoorn A., Bonaventure G., Rogachev I., Aharoni A. & Baldwin I. T. (2011). JA-Ile signalling in Solanum nigrum is not required for defence responses in nature.  Plant Cell And Environment. 2011 Dec , 34 (12):2159-2171.
  9. Panikashvili D., Shi J., Schreiber L. & Aharoni A. (2011). The Arabidopsis ABCG13 transporter is required for flower cuticle secretion and patterning of the petal epidermis.  New Phytologist. 2011, 190 (1):113-124.
  10. Moing A., Aharoni A., Biais B., Rogachev I., Meir S., Brodsky L., Allwood J. W., Erban A., Dunn W. B., Kay L., de Koning K. S., de Vos V. R. C. H., Jonker H., Mumm R., Deborde C., Maucourt M., Bernillon S., Gibon Y. & Hansen T. H. (2011). Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics.  New Phytologist. 2011, 190 (3):683-696.
  11. Shi J., Malitsky S., De Oliveira O. S., Branigan C., Franke R. B., Schreiber L. & Aharoni A. (2011). SHINE Transcription Factors Act Redundantly to Pattern the Archetypal Surface of Arabidopsis Flower Organs.  PLoS Genetics. 2011 May , 7 (5).


  1. Bar-Akiva A., Ovadia R., Rogachev I., Bar-Or C., Bar E., Freiman Z., Nissim-Levi A., Gollop N., Lewinsohn E., Aharoni A., Weiss D., Koltai H. & Oren-Shamir M. (2010). Metabolic networking in Brunfelsia calycina petals after flower opening.  Journal of Experimental Botany. 2010 Mar , 61 (5):1393-1403.
  2. Hanhineva K. & Aharoni A. (2010). Metabolomics in Fruit Development.  . 2010, :675-693.
  3. Brodsky L., Moussaieff A., Shahaf N., Aharoni A. & Rogachev I. (2010). Evaluation of Peak Picking Quality in LC-MS Metabolomics Data.  Analytical Chemistry. 2010 Nov , 82 (22):9177-9187.
  4. Tadmor Y., Burger J., Yaakov I., Feder A., Libhaber S. E., Portnoy V., Meir A., Tzuri G., Saar U., Rogachev I., Aharoni A., Abeliovich H., Schaffer A. A., Lewinsohn E. & Katzir N. (2010). Genetics of Flavonoid, Carotenoid, and Chlorophyll Pigments in Melon Fruit Rinds.  Journal of Agricultural and Food Chemistry. 2010 Oct , 58 (19):10722-10728.
  5. Panikashvili D., Shi J., Bocobza S., Franke R. B., Schreiber L. & Aharoni A. (2010). The Arabidopsis DSO/ABCG11 Transporter Affects Cutin Metabolism in Reproductive Organs and Suberin in Roots.  Molecular Plant. 2010 May , 3 (3):563-575.
  6. Nashilevitz S., Melamed-Bessudo C., Izkovich Y., Rogachev I., Osorio S., Itkin M., Adato A., Pankratov I., Hirschberg J., Fernie A. R., Wolf S., Usadel B., Levy A., Rumeau D. & Aharoni A. (2010). An Orange Ripening Mutant Links Plastid NAD(P)H Dehydrogenase Complex Activity to Central and Specialized Metabolism during Tomato Fruit Maturation.  Plant Cell. 2010 Jun , 22 (6):1977-1997.
  7. Peleg Z., Saranga Y., Fahima T., Aharoni A. & Elbaum R. (2010). Genetic control over silica deposition in wheat awns.  Physiologia Plantarum. 2010 Sept , 140 (1):10-20.


  1. Mandel T., Rogachev I., Venger I., Mintz-Oron S., Aharoni A. & Adato A. (2009). The Ins and Outs of Tomato Fruit Peel Metabolome.  Xii Eucarpia Symposium On Fruit Breeding And Genetics. 2009, 814 :465-473.
  2. Hanhineva K., Soininen P., Anttonen M. J., Kokko H., Rogachev I., Aharoni A., Laatikainen R. & Karenlampi S. (2009). NMR and UPLC-qTOF-MS/MS Characterisation of Novel Phenylethanol Derivatives of Phenylpropanoid Glucosides from the Leaves of Strawberry (Fragaria x ananassa cv. Jonsok).  Phytochemical Analysis. 2009 Sept , 20 (5):353-364.
  3. Itkin M. & Aharoni A. (2009). Bioengineering.  . 2009, :435-473.
  4. Feldberg L., Venger I., Malitsky S., Rogachev I. & Aharoni A. (2009). Dual Labeling of Metabolites for Metabolome Analysis (DLEMMA): A New Approach for the Identification and Relative Quantification of Metabolites by Means of Dual Isotope Labeling and Liquid Chromatography-Mass Spectrometry.  Analytical Chemistry. 2009 Nov , 81 (22):9257-9266.
  5. Mintz-Oron S., Aharoni A., Ruppin E. & Shlomi T. (2009). Network-based prediction of metabolic enzymes' subcellular localization.  Bioinformatics. 2009 Jun , 25 (12):I247-I252.
  6. Hanhineva K., Kokko H., Siljanen H., Rogachev I., Aharoni A. & Karenlampi S. O. (2009). Stilbene synthase gene transfer caused alterations in the phenylpropanoid metabolism of transgenic strawberry (Fragariaxananassa).  Journal of Experimental Botany. 2009 May , 60 (7):2093-2106.
  7. Panikashvili D., Shi J., Schreiber L. & Aharoni A. (2009). The Arabidopsis DCR Encoding a Soluble BAHD Acyltransferase Is Required for Cutin Polyester Formation and Seed Hydration Properties.  Plant Physiology. 2009 Dec , 151 (4):1773-1789.
  8. Nashilevitz S., Melamed-Bessudo C., Aharoni A., Kossmann J., Wolf S. & Levy A. (2009). The legwd mutant uncovers the role of starch phosphorylation in pollen development and germination in tomato.  Plant Journal. 2009 Jan , 57 (1):1-13.
  9. Tzin V., Malitsky S., Aharoni A. & Galili G. (2009). Expression of a bacterial bi-functional chorismate mutase/prephenate dehydratase modulates primary and secondary metabolism associated with aromatic amino acids in Arabidopsis.  Plant Journal. 2009 Oct , 60 (1):156-167.
  10. Itkin M., Seybold H., Breitel D., Rogachev I., Meir S. & Aharoni A. (2009). TOMATO AGAMOUS-LIKE 1 is a component of the fruit ripening regulatory network.  Plant Journal. 2009 Dec , 60 (6):1081-1095.
  11. Adato A., Mandel T., Mintz-Oron S., Venger I., Levy D., Yativ M., Dominguez E., Wang Z., De Vos V. R. C. H., Jetter R., Schreiber L., Heredia A., Rogachev I. & Aharoni A. (2009). Fruit-Surface Flavonoid Accumulation in Tomato Is Controlled by a SIMYB12-Regulated Transcriptional Network.  PLoS Genetics. 2009 Dec , 5 (12).


  1. Cohen A., Bocobza S., Veksler I., Gabdank I., Barash D., Aharoni A., Shapira M. & Kedem K. (2008). Computational identification of three-way junctions in folded RNAs: A case study in arabidopsis.  In Silico Biology. 2008 Jul , 8 (2):105-120.
  2. Griesser M., Hoffmann T., Bellido M. L., Rosati C., Fink B., Kurtzer R., Aharoni A., Munoz-Blanco J. & Schwab W. (2008). Redirection of flavonoid biosynthesis through the down-regulation of an anthocyanidin glucosyltransferase in ripening strawberry fruit.  Plant Physiology. 2008 Apr , 146 (4):1528-1539.
  3. Panikashvili D. & Aharoni A. (2008). ABC-type transporters and cuticle assembly.  PLANT SIGNALING & BEHAVIOR. 2008 Oct , 3 (10):806-809.
  4. Hanhineva K., Rogachev I., Kokko H., Mintz-Oron S., Venger I., Karenlampi S. & Aharoni A. (2008). Non-targeted analysis of spatial metabolite composition in strawberry (Fragaria x ananassa) flowers.  Phytochemistry. 2008 Oct , 69 (13):2463-2481.
  5. Bocobza S. E. & Aharoni A. (2008). Switching the light on plant riboswitches.  Trends in Plant Science. 2008 Oct , 13 (10):526-533.
  6. Mintz-Oron S., Mandel T., Rogachev I., Feldberg L., Lotan O., Yativ M., Wang Z., Jetter R., Venger I., Adato A. & Aharoni A. (2008). Gene expression and metabolism in tomato fruit surface tissues.  Plant Physiology. 2008 Jun , 147 (2):823-851.
  7. Fait A., Hanhineva K., Beleggia R., Dai N., Rogachev I., Nikiforova V. J., Fernie A. R. & Aharoni A. (2008). Reconfiguration of the achene and receptacle metabolic networks during strawberry fruit development.  Plant Physiology. 2008 Oct , 148 (2):730-750.
  8. Malitsky S., Blum E., Less H., Venger I., Elbaz M., Morin S., Eshed Y. & Aharoni A. (2008). The Transcript and Metabolite Networks Affected by the Two Clades of Arabidopsis Glucosinolate Biosynthesis Regulators.  Plant Physiology. 2008 Dec , 148 (4):2021-2049.


  1. Lücker J., Bouwmeester H. J. & Aharoni A. (2007). Metabolic engineering of terpenoid biosynthesis in plants.  . 2007, :219-236.
  2. Karaba A., Dixit S., Greco R., Aharoni A., Trijatmiko K. R., Marsch-Martinez N., Krishnan A., Nataraja K. N., Udayakumar M. & Pereira A. (2007). Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene.  Proceedings of the National Academy of Sciences of the United States of America. 2007 Sept , 104 (39):15270-15275.
  3. Panikashvili D., Savaldi-Goldstein S., Mandel T., Yifhar T., Franke R. B., Hoefer R., Schreiber L., Chory J. & Aharoni A. (2007). The Arabidopsis DESPERADO/AtWBC11 transporter is required for cutin and wax secretion.  Plant Physiology. 2007 Dec , 145 (4):1345-1360.
  4. Spitzer B., Ben Zvi Z. M. M., Ovadis M., Marhevka E., Barkai O., Edelbaum O., Marton I., Masci T., Alon M., Morin S., Rogachev I., Aharoni A. & Vainstein A. (2007). Reverse genetics of floral scent: Application of tobacco rattle virus-based gene silencing in petunia.  Plant Physiology. 2007 Dec , 145 (4):1241-1250.


  1. Aharoni A., Jongsma M. A., Kim T. Y., Ri M. B., Giri A. P., Verstappen F. W. A., Schwab W. & Bouwmeester H. J. (2006). Metabolic engineering of terpenoid biosynthesis in plants.  Phytochemistry Reviews. 2006 Feb , 5 (1):49-58.
  2. Lunkenbein S., Bellido M. L., Aharoni A., Salentijn E. M., Kaldenhoff R., Coiner H. A., Muñoz-Blanco J. & Schwab W. (2006). Cinnamate metabolism in ripening fruit. Characterization of a UDP-glucose: Cinnamate Glucosyltransferase from strawberry.  Plant Physiology. 2006 Mar , 140 (3):1047-1058.


  1. Aharoni A., Jongsma M. & Bouwmeester H. (2005). Volatile science? Metabolic engineering of terpenoids in plants.  Trends in Plant Science. 2005 Dec , 10 (12):594-602.
  2. Kappers I., Aharoni A., van Herpen H. T., Luckerhoff L., Dicke M. & Bouwmeester H. (2005). Genetic engineering of terpenoid metabolism attracts, bodyguards to Arabidopsis.  Science. 2005 Sept , 309 (5743):2070-2072.


  1. Beekwilder J., Alvarez-Huerta M., Neef E., Verstappen F. W. A., Bouwmeester H. J. & Aharoni A. (2004). Functional characterization of enzymes forming volatile esters from strawberry and banana.  Plant Physiology. 2004 Aug , 135 (4):1865-1878.
  2. Aharoni A., Dixit S., Jetter R., Thoenes E., Van Arkel G. & Pereira A. (2004). The SHINE clade of AP2 Domain Transcription Factors Activates Wax Biosynthesis, Alters Cuticle Properties, and Confers Drought Tolerance when Overexpressed in Arabidopsis W inside a box sign.  Plant Cell. 2004 Sept , 16 (9):2463-2480.
  3. Aharoni A., Giri A., Verstappen F., Bertea C., Sevenier R., Sun Z., Jongsma M., Schwab W. & Bouwmeester H. (2004). Gain and loss of fruit flavor compounds produced by wild and cultivated strawberry species.  Plant Cell. 2004 Nov , 16 (11):3110-3131.


  1. Rosin F. M., Aharoni A., Salentijn E. M., Schaart J. G., Boone M. J. & Hannapel D. J. (2003). Expression patterns of a putative homolog of AGAMOUS, STAG1, from strawberry.  Plant Science. 2003 Nov , 165 (5):959-968.
  2. Salentijn E. M., Aharoni A., Schaart J. G., Boone M. J. & Krens F. A. (2003). Differential gene expression analysis of strawberry cultivars that differ in fruit-firmness.  Physiologia Plantarum. 2003 Aug , 118 (4):571-578.
  3. Aharoni A., Giri A. P., Deuerlein S., Griepink F., De Kogel W. J., Verstappen F. W., Verhoeven H. A., Jongsma M. A., Schwab W. & Bouwmeester H. J. (2003). Terpenoid Metabolism in Wild-Type and Transgenic Arabidopsis Plants.  Plant Cell. 2003 Dec , 15 (12):2866-2884.


  1. Aharoni A. & O'Connell A. P. (2002). Gene expression analysis of strawberry achene and receptacle maturation using DNA microarrays.  Journal of Experimental Botany. 2002 Oct , 53 (377):2073-2087.
  2. Aharoni A. & Vorst O. (2002). DNA microarrays for functional plant genomics.  Plant Molecular Biology. 2002 Feb , 48 (1-2):99-118.
  3. Aharoni A., De Vos C. H., Verhoeven H. A., Maliepaard C. A., Kruppa G., Bino R. & Goodenowe D. B. (2002). Nontargeted metabolome analysis by use of Fourier Transform Ion Cyclotron Mass Spectrometry.  OMICS A Journal of Integrative Biology. 2002 Jan , 6 (3):217-234.
  4. Aharoni A., Keizer L. C., Van den Broeck H. C., Blanco-Portales R., Muñoz-Blanco J., Bois G., Smit P., De Vos R. C. & O'Connell A. P. (2002). Novel insight into vascular, stress, and auxin-dependent and -independent gene expression programs in strawberry, a non-climacteric fruit.  Plant Physiology. 2002 Jan , 129 (3):1019-1031.


  1. Schwab W., Aharoni A., Raab T., Pérez A. G. & Sanz C. (2001). Cytosolic aldolase is a ripening related enzyme in strawberry fruits (Fragaria x ananassa).  Phytochemistry. 2001 Mar , 56 (5):407-415.
  2. Aharoni A., De Vos C. H., Wein M., Sun Z., Greco R., Kroon A., Mol J. N. & O'Connell A. P. (2001). The strawberry FaMYB1 transcription factor suppresses anthocyanin and flavonol accumulation in transgenic tobacco.  Plant Journal. 2001 Nov , 28 (3):319-332.


  1. Van Hal N. L., Vorst O., Van Houwelingen A. M., Kok E. J., Peijnenburg A., Aharoni A., Van Tunen A. J. & Keijer J. (2000). The application of DNA microarrays in gene expression analysis.  Journal of Biotechnology. 2000 Mar , 78 (3):271-280.
  2. Aharoni A., Keizer L. C., Bouwmeester H. J., Sun Z., Alvarez-Huerta M., Verhoeven H. A., Blaas J., Van Houwelingen A. M., De Vos R. C., Van Der Voet H., Jansen R. C., Guis M., Mol J., Davis R. W., Schena M., Van Tunen A. J. & O'Connell A. P. (2000). Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays.  Plant Cell. 2000 Jun , 12 (5):647-661.


  1. Zuker A., Ahroni A., Tzfira T., Ben-Meir H. & Vainstein A. (1999). Wounding by bombardment yields highly efficient Agrobacterium-mediated transformation of carnation (Dianthus caryophyllus L.).  Molecular Breeding. 1999 Jan , 5 (4):367-375.


  1. Lemieux B., Aharoni A. & Schena M. (1998). Overview of DNA chip technology.  Molecular Breeding. 1998 Jan , 4 (4):277-289.


  1. Zuker A., Ahroni A., Shejtman H. & Vainstein A. (1997). Adventitious shoot regeneration from leaf explants of Gypsophila paniculata L..  Plant Cell Reports. 1997 Jan , 16 (11):775-778.
  2. Ahroni A., Zuker A., Rozen Y., Shejtman H. & Vainstein A. (1997). An efficient method for adventitious shoot regeneration from stem-segment explants of gypsophila.  Plant Cell, Tissue and Organ Culture. 1997 Jan , 49 (2):101-106.
  3. Zuker A., Ahroni A. & Vainstein A. (1997). A highly efficient method for carnation transformation.  . 1997 Dec , :373-375.


  1. Zuker A., Aharoni A., Watad A., Chang P., Kononowicz A., Woodson W., Bressan R., Hasegawa P. & Vainstein A. (1996). Transformation of carnation using the biolistic method.  Plant Tissue Culture and Biotechnology. 1996 Feb , 2 :105-108.
  2. Watad A., Ahroni A., Zuker A., Shejtman H., Nissim A. & Vainstein A. (1996). Adventitious shoot formation from carnation stem segments: A comparison of different culture procedures.  Scientia Horticulturae. 1996 Aug , 65 (4):313-320.


  1. Zuker A., Chang P., Ahroni A., Cheah K., Woodson W., Bressan R., Watad A., Hasegawa P. & Vainstein A. (1995). Transformation of carnation by microprojectile bombardment.  Scientia Horticulturae. 1995 Nov , 64 (3):177-185.