Publications

2022

  1. 91.
    R. Ben-Tov Perry, M. Tsoory, M. Tolmasov, I. Ulitsky, Nov 2022, bioRxiv.  Abstract
  2. 90.
    B. Slobodin, U. Sehrawat, A. Lev, A. Ogran, D. Fraticelli, D. Hayat, B. Zuckerman, I. Ulitsky, A. Ben-Shmuel, E. Bar-David, H. Levy and R. Dikstein, Aug 2022, Nucleic Acids Research. 14, 50, p. 8080-8092  Abstract
  3. 89.
    74. L. Bernard, A. Dubois, V. Heurtier, V. Fischer, I. Gonzalez, A. Chervova, A. Tachtsidi, N. Gil, N. Owens, S. Vanormael-Pournin, J.C.R. Silva, I. Ulitsky, M. Cohen-Tannoudji and P. Navarro, Jul 2022, Nucleic Acids Rearch. 13, 50, p. 7367-7379  Abstract
  4. 88.
    J.P. Unfried and I. Ulitsky, May 2022, Nature Cell Biology. 5, 24, p. 608-615  Abstract
  5. 87.
    M. Ron and I. Ulitsky, May 2022, Nature Communications. 1, 13, p. 2481  Abstract
  6. 86.
    N. Nissani and I. Ulitsky, Apr 2022, Molecular Systems Biology. 4, 18, p. e10682  Abstract
  7. 85.
    M. Royer; B. Pai; R. Menon; A. Bludau; K. Gryksa; R. Ben-Tov Perry; I. Ulitsky; G. Meister; I. Neumann, Mar 2022, Molecular Psychiatry.  Abstract
  8. 84.
    Nucleoporin-93 reveals a common feature of aggressive breast cancers: robust nucleocytoplasmic transport of transcription factors
    N. B. Nataraj; A. Noronha; J.S. Lee et al., Feb 2022, Cell Reports. 8, 38, p. 110418  Abstract [All authors]
  9. 83.
    C.J. Ross; I. Ulitsky, Jan 2022, WIREs RNA. p. e1708  Abstract

2021

  1. 82.
    R. Ben-Tov Perry and I. Ulitky, Aug 2021, Science. 373, 6555, p. 623-624
  2. 81.
    Degani, N., Y. Lubelsky, R. Ben-Tov Perry, Ainbinder, E., Ulitsky, I., Jul 2021, PLoS Genetics. 17, 7, p. e1009681  Abstract
  3. 80.
    Y. Finkel, A. Gluck, R. Winkler, A. Nachshon, R. Winkler, T. Fisher, B. Rozman, O. Mizrahi, Y. Lubelsky, B. Zuckerman, B. Slobodin, Y. Yahalom-Ronen, H. Tamir , I. Ulitsky, T. Israely, N. Paran, M. Schwartz and N. Stern-Ginossar, Jun 2021, Nature. 594, 7862, p. 240-245
  4. 79.
    The GUL-1 protein binds multiple RNAs involved in cell wall remodeling and affects the MAK-1 pathway in Neurospora crassa.
    I. Herold, A. Zolti, M. Garduno-Rosales, Z. Wang, F. Lopez-Giraldez, R. Mouriño-Pérez, J. Townsend, I. Ulitsky, and O. Yarden, May 2021, Frontiers in Fungal Biology, section Fungal Physiology and Metabolism.
  5. 78.
    Y. Lubelsky; B. Zuckerman; I. Ulitsky, May 2021, The EMBO Journal.  Abstract
  6. 77.
    R. L. Mather; A. Parolia; E. Venalainen et al., Apr 2021, Molecular Oncology.  Abstract [All authors]
  7. 76.
    J. Monteiro, J. Rodor, A. Caudrillier et al., Mar 2021, Circulation Research. 8, 128, p. 1173-1190  Abstract [All authors]
  8. 75.
    M. Bennett; I. Ulitsky; I. Alloza; K. Vandenbroeck; V. Miscianinov; A.D. Mahmoud; M. Ballantyne; J. Rodor; and A.H. Baker., Feb 2021, International Journal of Molecular Science. 3, 22, p. 1484  Abstract

2020

  1. 74.
    C.J. Ross; A. Rom; A. Spinrad; D. Gelbard Solodkin; N. Degani; I. Ulitsky, Dec 2020, Genome Biology. 1, 22, p. 29  Abstract
  2. 73.
    S. Zagorac; A.de Giorgio; M. Kalisz et al., Nov 2020, Cancer Research. 3, 81, p. 580-593  Abstract [All authors]
  3. 72.
    Hezroni H.; Ben-Tov Perry, R.; Gil, N.; Degani. N.; Ulitsky, I.. , Sep 2020, EMBO Reports. 11, 21, p. e51264  Abstract
  4. 71.
    T. Koffler-Brill; S. Taiber; A. Anaya; M. Bordeynik-Cohen; E. Rosen; L. Kolla; M.W. Kelley; I. Ulitsky; and K.B. Avraham, Sep 2020, RNA Biology. Nov 1, p. 1-10  Abstract
  5. 70.
    J.A. Ramilowski, C.W. Yip, S. Agrawal, J.C. Chang, Y. Ciani, I.V. Kulakovskiy, M. Mendez, J.L.C. Ooi, J.F. Ouyang, N. Parkinson, A. Petri, L. Roos, J. Severin, K. Yasuzawa, I. Abugessaisa, A. Akalin, I.V. Antonov, E. Arner, A. Bonetti, H. Bono, B. Borsari, F. Brombacher, C.J.F. Cameron, C. Vittorio Cannistraci, R. Cardenas, M. Cardon, H. Chang, J. Dostie, L. Ducoli, A. Favorov, A. Fort, D. Garrido, N. Gil, J. Gimenez, R. Guler, L. Handoko, J. Harshbarger, A. Hasegawa, Y. Hasegawa, K. Hashimoto, N. Hayatsu, P. Heutink, T. Hirose, E.L. Imada, M. Itoh, B. Kaczkowski, A. Kanhere, E. Kawabata, H. Kawaji, T. Kawashima, S.T. Kelly, M. Kojima, N. Kondo, H. Koseki, T. Kouno, A. Kratz, M. Kurowska-Stolarska, A. Tae Jun Kwon, J. Leek, A. Lennartsson, M. Lizio, F. López-Redondo, J. Luginbühl, S. Maeda, V.J. Makeev, L. Marchionni, Y.A. Medvedeva, A. Minoda, F. Müller, M. Muñoz-Aguirre, M. Murata, H. Nishiyori, K.R. Nitta, S. Noguchi, Y. Noro, R. Nurtdinov, Y. Okazaki, V. Orlando, D. Paquette, C.J.C. Parr, O.J.L. Rackham, P. Rizzu, D. Fernando Sánchez Martinez, A. Sandelin, P. Sanjana, C.A.M. Semple, Y. Shibayama, D.M. Sivaraman, T. Suzuki, S.C. Szumowski, M. Tagami, M.S. Taylor, C. Terao, M. Thodberg, S. Thongjuea, V. Tripathi, I. Ulitsky, R. Verardo, I.E. Vorontsov, C. Yamamoto, R.S. Young39, J.K. Baillie, A.R.R. Forrest, R. Guigó, M.M. Hoffman, C.C. Hon, T. Kasukawa, S. Kauppinen, J. Kere, B. Lenhard, C. Schneider, H. Suzuki, K. Yagi, M.J.L. de Hoon, J.W. Shin and P. Carninci, Jul 2020, Genome Research.  Abstract
  6. 69.
    B. Zuckerman, M. Ron, M. Mikl, E. Segal and I. Ulitsky, Jun 2020, Molecular Cell. 79, 2, p. 251-267.e6  Abstract
  7. 68.
    B. Slobodin, A. Bahat, U. Sehrawat, S. Becker-Herman, B. Zuckerman, A.N. Weiss, R. Han, R. Elkon, R. Agami, I. Ulitsky, I. Shachar, R. Dikstein., Apr 2020, Molecular Cell. 78, 3, p. 434-444.e5  Abstract
  8. 67.
    R.L. Seal, L.L. Chen, S. Griffiths‐Jones, T.M. Lowe, M.B. Mathews, D. O'Reilly, A.J. Pierce, P.F. Stadler, I. Ulitsky, S.L. Wolin and E.A. Bruford. A guide to naming human non‐coding RNA genes. , Mar 2020, The EMBO Journal. 39, 6, p. e103777  Abstract
  9. 66.
    N. Gil and I. Ulitsky, Feb 2020, Nature Reviews Genetics. 21, 2, p. 102-117  Abstract
  10. 65.
    H. Hezroni, R. Ben Tov Perry, I. Ulitsky, Jan 2020, Cold Spring Harbor Symposia on Quantitative Biology. In press,  Abstract
  11. 64.
    M. Pradas-Juni, N. R. Hansmeier, J.C. Link, E. Schmidt, B.D. Larsen, P. Klemm, N. Meola, H. Topel, R. Loureiro, I. Dhaouadi, C.A. Kiefer, R. Schwarzer, S. Khani, M. Oliverio, M. Awazawa, P. Frommolt, J. Heeren, L. Scheja, M. Heine, C. Dieterich, H. Büning, L. Yang, H. Cao, D. F. De Jesus, R.N. Kulkarni, Branko Zevnik, S.E. Tröder, U. Knippschild, P.A. Edwards, R.G. Lee, M. Yamamoto, I. Ulitsky, E. Fernandez-Rebollo, T.Q. de Aguiar Vallim and J.W. Kornfeld. , Jan 2020, Nature Communications. 11, p. 644  Abstract

2019

  1. 63.
    L. Geirsdottir, E. David, H. Keren-Shaul, A. Weiner, S.C. Bohlen, J. Neuber, A. Balic, A. Giladi, F. Sheban, C.A. Dutertre, C. Pfeifle, F. Peri, A. Raffo-Romero, J. Vizioli, K. Matiasek, C. Scheiwe, S. Meckel, K. Mätz-Rensing, F. van der Meer, F. R. Thormodsson, C. Stadelmann, N. Zilkha, T. Kimchi, F. Ginhoux, I. Ulitsky, D. Erny, I. Amit and M. Prinz. , Dec 2019, Cell. 179, 7, p. 1609-1622  Abstract
  2. 62.
    A. Graindorge, I. Pinheiro, A. Mallory , P. Tsvetkov , N. Gil, C. Carolis, F. Buchholz, I. Ulitsky, E. Heard, M. Taipale and A. Shkumatava, Nov 2019, Nature Communications. 10, 1, p. 5317  Abstract
  3. 61.
    A. Rom, L. Melamed, N. Gil, M. Goldrich, R. Kadir, M. Golan, I. Biton, R. Ben-Tov Perry and I. Ulitsky. , Nov 2019, Nature Communications. 10, 1, p. 5092  Abstract
  4. 60.
    J.P. Monteiro, M. Bennett, J. Rodor, A. Caudrillier, I. Ulitsky, and A.H. Baker., Oct 2019, Cardiovascular Research. 115, 12, p. 1692-1704  Abstract
  5. 59.
    49. A.D. Mahmoud, M.D. Ballantyne, V. Miscianinov, K. Pinel, J. Hung, J. Scanlon, J. Iyinikkel, J. Kaczynski, A.S. Tavares, A.C. Bradshaw, N.L. Mills, D.E. Newby, A. Caporali, G. W. Gould, S.J. George, I. Ulitsky, J.C. Slumier, J. Rodor and A.H. Baker., Jul 2019, Circulation Research. 125, 5, p. 525-551  Abstract
  6. 58.
    T.A. Hait, A. Maron-Katz, D. Sagir, D. Amar, I. Ulitsky, C. Linhart, R. Sharan, Y. Shiloh, R. Elkon and R. Shamir, Jun 2019, Journal of Molecular Biology. 431, 13, p. 2398-2406  Abstract
  7. 57.
    F. Carvalhal Marques and I. Ulitsky , Apr 2019, eLife. 8, p. e45974  Abstract
  8. 56.
    C. Ciolli Mattioli, A. Rom, V. Franke, K. Imami, G. Tane, M. Terne; A. Woehler, A. Akalin, I. Ulitsky and M. Chekulaeva. , Mar 2019, Nucleic Acids Research. 47, 5, p. 2560-2573  Abstract
  9. 55.
    Zuckerman B, Ulitsky I , Feb 2019, RNA. 25, 5, p. 557-572  Abstract

2018

  1. 54.
    Silberman A; Goldman O; Boukobza Assayag O et al., Dec 2018, Cancer Research.  Abstract [All authors]
  2. 53.
    Perry, RBT; Hezroni, H; Goldrich MJ; Ulitsky I, Oct 2018, Molecular Cell. 72, 3, p. 553-567.E5  Abstract
  3. 52.
    Agarwal, V; Subtelny, AO; Thiru, P; Ulitsky, I; Bartel, DP, Sep 2018, Genome Biology. 19, 1, p. 19(1):152  Abstract
  4. 51.
    Gil, N., Ulitsky, I, Jun 2018, Cell Systems. 7, 5, p. 537-547  Abstract
  5. 50.
    Arandkar, S; Furth, N; Elisha, Y et al., Jun 2018, PNAS. 115, 25, p. 6410-6415  Abstract [All authors]
  6. 49.
    Haimon, Z; Volaski, A; Orthgiess, J et al., May 2018, Nature Immunology. 19, 6, p. 636-644  Abstract [All authors]
  7. 48.
    Ulitsky, I, May 2018, FEBS Letters. In Press,  Abstract
  8. 47.
    Lubelsky Y and Ulitsky I, Mar 2018, Nature. 555, 7694, p. 107-111  Abstract
  9. 46.
    Tichon A; Ben-Tov Perry R; Stojic L; Ulitsky I, Jan 2018, Genes & Development. 32, 1, p. 70-78  Abstract

2017

  1. 45.
    Tamarkin-Ben-Harush, A; Vasseur, JJ; Debart, F; Ulitsky, I; Dikstein, R, Feb 2017, eLife. 6,  Abstract
  2. 44.
    Haimov, O; Sinvani, H; Martin, F; Ulitsky, I; Emmanuel, R; Tamarkin-Ben-Harush, A; Vardy, A; Dikstein, R, Feb 2017, Molecular and Cellular Biology. 37,  Abstract
  3. 43.
    Ushakov, K; Koffler-Brill, T; Rom, A; Perl, K; Ulitsky, I; Avraham, KB, Feb 2017, Scientific Reports. 7,  Abstract
  4. 42.
    Hezroni, H; Ben-Tov Perry, R; Meir, Z; Housman, G; Lubelsky, Y; Ulitsky, I, Feb 2017, Genome Biology. 18, p. 162  Abstract
  5. 41.
    4. Marín-Béjar O, Mas AM, González J, Martinez D, Athie A, Morales X, Galduroz M, Raimondi I, Grossi E, Guo S, Rouzaut A, Ulitsky I, Huarte M., Feb 2017, Genome Biology. 18, 1, p. 202  Abstract
  6. 40.
    Shamir R; Klein C; Amar D et al., Feb 2017, Neurology. 89, 16, p. 1676-1683  Abstract [All authors]

2016

  1. 39.
    Housman, G; Ulitsky, I, Feb 2016, BBA - Gene Regulatory Mechanisms. 1859, p. 31-40  Abstract
  2. 38.
    Tichon, Ailone; Gil, Noa; Lubelsky, Yoav; Havkin Solomon, Tal; Lemze, Doron; Itzkovitz, Shalev; Stern-Ginossar, Noam; Ulitsky, Igor, Feb 2016, Nature communications. 7,  Abstract
  3. 37.
    Sas-Chen, A; Aure, M R; Leibovich, L et al., Feb 2016, EMBO molecular medicine. 8,  Abstract [All authors]
  4. 36.
    Ulitsky, I, Feb 2016, Nature Reviews Genetics. 17, p. 601-614  Abstract
  5. 35.
    Perry, RB; Ulitsky, I, Feb 2016, Development. 143, p. 3882-3894

2015

  1. 34.
    Bahar-Halpern, K; Caspi, I; Lemze, D; Levy, M; Landen, S; Elinav, E; Ulitsky, I; Itzkovitz, S, Feb 2015, Cell Reports. 13, p. 2653-2662  Abstract
  2. 33.
    Enuka, Y; Lauriola, M; Feldman, ME; Sas-Chen, A; Ulitsky, I; Yarden, Y, Feb 2015, Nucleic Acids Research. 44, p. 1370-1383  Abstract
  3. 32.
    Hezroni, H; Koppstein, D; Schwartz, MG; Avrutin, A; Bartel, DP; Ulitsky, I, Feb 2015, Cell Reports. 11, p. 1110-1122  Abstract
  4. 31.
    Arafeh, R; Qutob, N; Emmanuel, R et al., Feb 2015, Nature Genetics. 47, p. 1408-+  Abstract [All authors]
  5. 30.
    Rabinovich, S; Adler, L; Yizhak, K et al., Feb 2015, Nature. 527, p. 379-+  Abstract [All authors]

2013

  1. 29.
    Ulitsky, I; Bartel, DP, Feb 2013, Cell. 154, p. 26-46  Abstract
  2. 28.
    Auyeung, VC; Ulitsky, I; McGeary, SE; Bartel, DP, Feb 2013, Cell. 152, p. 844-858  Abstract

2012

  1. 27.
    Ulitsky, I; Shkumatava, A; Jan, CH; Subtelny, AO; Koppstein, D; Bell, GW; Sive, H; Bartel, DP, Feb 2012, Genome Research. 22, p. 2054-2066  Abstract

2011

  1. 26.
    Paz, A; Brownstein, Z; Ber, Y et al., Feb 2011, Nucleic Acids Research. 39, p. D793-D799  Abstract [All authors]
  2. 25.
    Ulitsky, I; Shkumatava, A; Jan, CH; Sive, H; Bartel, DP, Feb 2011, Cell. 147, p. 1537-1550  Abstract
  3. 24.
    Marom, L; Ulitsky, I; Cabilly, Y; Shamir, R; Elroy-Stein, O, Feb 2011, PLoS One. 6,  Abstract
  4. 23.
    Elkan-Miller, T; Ulitsky, I; Hertzano, R et al., Feb 2011, PLoS One. 6,  Abstract [All authors]
  5. 22.
    Laurent, LC; Ulitsky, I; Slavin, I et al., Feb 2011, Cell Stem Cell. 8, p. 106-118  Abstract [All authors]

2010

  1. 21.
    Romano, GH; Gurvich, Y; Lavi, O; Ulitsky, I; Shamir, R; Kupiec, M, Feb 2010, Molecular Systems Biology. 6,  Abstract
  2. 20.
    Ulitsky, I; Maron-Katz, A; Shavit, S et al., Feb 2010, Nature Protocols. 5, p. 303-322  Abstract [All authors]
  3. 19.
    Discovering Transcriptional Modules by Combined Analysis of Expression Profiles and Regulatory Sequences
    Halperin, Y; Linhart, C; Ulitsky, I; Shamir, R, Feb 2010, RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, PROCEEDINGS. 6044, p. 578-579
  4. 18.
    Ulitsky, I; Krishnamurthy, A; Karp, RM; Shamir, R, Feb 2010, PLoS One. 5,  Abstract
  5. 17.
    Ulitsky, I; Laurent, LC; Shamir, R, Feb 2010, Nucleic Acids Research. 38,  Abstract
  6. 16.
    Aguilar, PS; Froehlich, F; Rehman, M et al., Feb 2010, Nature Structural & Molecular Biology. 17, p. 901-U175  Abstract [All authors]
  7. 15.
    Abraham, S; Sheridan, SD; Laurent, LC; Albert, K; Stubban, C; Ulitsky, I; Miller, B; Loring, JF; Rao, RR, Feb 2010, Biochemical and Biophysical Research Communications. 393, p. 211-216  Abstract

2009

  1. 14.
    Ulitsky, I; Shamir, R, Feb 2009, Bioinformatics. 25, p. 1158-1164  Abstract
  2. 13.
    Halperin, Y; Linhart, C; Ulitsky, I; Shamir, R, Feb 2009, Nucleic Acids Research. 37, p. 1566-1579  Abstract
  3. 12.
    Ulitsky, I; Krogan, NJ; Shamir, R, Feb 2009, Genome Biology. 10,  Abstract

2008

  1. 11.
    Muller, FJ; Laurent, LC; Kostka, D et al., Feb 2008, Nature. 455, p. 401-U55  Abstract [All authors]
  2. 10.
    Ulitsky, I; Shlomi, T; Kupiec, M; Shamir, R, Feb 2008, Molecular Systems Biology. 4,  Abstract
  3. 9.
    Laurent, LC; Chen, J; Ulitsky, I; Mueller, FJ; Lu, C; Shamir, R; Fan, JB; Loring, JF, Feb 2008, Stem Cells. 26, p. 1506-1516  Abstract
  4. 8.
    Elkon, R; Vesterman, R; Amit, N et al., Feb 2008, BMC Bioinformatics. 9,  Abstract [All authors]
  5. 7.
    Ulitsky, I; Gat-Viks, I; Shamir, R, Feb 2008, Genome Biology. 9,  Abstract
  6. 6.
    Detecting disease-specific dysregulated pathways via analysis of clinical expression profiles
    Ulitsky, I; Karp, RM; Shamir, R, Feb 2008, RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, PROCEEDINGS. 4955, p. 347-359  Abstract

2007

  1. 5.
    Ulitsky, I; Shamir, R, Feb 2007, Molecular Systems Biology. 3,  Abstract
  2. 4.
    Sharan, R; Ulitsky, I; Shamir, R, Feb 2007, Molecular Systems Biology. 3,  Abstract
  3. 3.
    Ulitsky, I; Shamir, R, Feb 2007, BMC Systems Biology. 1,  Abstract

2006

  1. 2.
    Ulitsky, I; Burstein, D; Tuller, T; Chor, B, Feb 2006, Journal of Computational Biology. 13, p. 336-350  Abstract

2005

  1. 1.
    Information theoretic approaches to whole genome phylogenies
    Burstein, D; Ulitsky, I; Tuller, T; Chor, B, Feb 2005, RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, PROCEEDINGS. 3500, p. 283-295  Abstract