Tools and pipelines
- LncLOOM - finding conserved motif combinations in orthologous noncoding sequences
- PLAR - pipeline for lncRNA annotation from RNA-seq data from Hezroni et al. Cell Reports 2015
- Software for identifying 'eRNA production centers' (EPCs) from Gil & Ulitsky, Cell Systems 2018
- Ulitsky lab MPRNA counting suite
Guides
Ours
- A comprehensive guide for following the scientific literature by Igor Ulitsky - updated October 2014
- Finding a lab to do your postdoc - updated August 2020
Others
- So you want to be a computational biologist? by Loman and Watson
- The science of scientific writing by Gopen and Swan