The Programmed Cell Death Network

Programmed cell death (PCD) is a fundamental cell biological process that is necessary for embryonic development and tissue morphogenesis, and removal of unwanted, infected or damaged cells during an organism’s life-time. Its misregulation can lead to diseases such as cancer and neuro-degeneration.

The three main signaling modules that affect a cell’s decision to live or die are apoptosis, programmed necrosis and autophagy. Each is characterized by a set of specific morphological features, and is regulated and executed by individual signaling pathways. However, certain protein nodes in these pathways can be shared by one or more module, representing points of integration or inter-modular cross-talk. The sum total of these individual pathways and the interactions among them is referred to as the PCD network.

PCD network map

DAPK1, DAPK2, DAP1, DAP3, DAP5

Our point-of-entry to the field of PCD came in the early 1990’s, when our lab identified the Death Associated Proteins, or DAPs, in a functional genetic screen for novel genes necessary for interferon-g induced cell death.

Programmed necrosis (necroptosis)

Morphology: cell swelling and loss of membrane integrity
Mechanism: Activation of RIP1/RIP3 necrosome to phosphorylate MLKL, which forms pores in cellular membranes
Significance: pathological conditions; alternative death pathway when apoptotic DISC is non-functional

Autophagy

Morphology: double-membrane bound vesicles (autophagosomes)
Mechanism: The regulated action of Atg genes mediates ubiquitin-like conjugation reactions that lead to the de novo formation of autophagosomes, to engulf bulk cytoplasm and organelles, which then fuse with the lysosome for degradation of the contents
Significance: cell survival and homeostasis; source of energy and cellular building blocks during cell stress (e.g. starvation); alternative death pathway when hyper-activated.

Apoptosis

Morphology: cell shrinkage, membrane blebbing, nuclear and cellular fragmentation
Mechanism: Death stimulus activates the caspase proteases, which cleave specific cellular proteins
Significance: development and morphogenesis; cancer; neurodegenerative disease