Network Motifs

  • Anat Bren; Uri Alon
    Architecture and Dynamics of Transcriptional Networks
    Bacterial Stress Responses, 2nd Edition , :000000160 (2011) [PDF]
  • Daniel Madar; Erez Dekel; Anat Bren; Uri Alon
    Negative Auto-Regulation Increases the Input Dynamic-Range of the Arabinose System of Escherichia Coli
    Bmc Systems Biology , 5:000025621 (2011) [PDF] [SOM]
  • Oren Shoval; Uri Alon
    Snapshot: Network Motifs
    Cell , 143:000036278 (2010)
  • Ofer Rahat; Uri Alon; Yaakov Levy; Gideon Schreiber
    Understanding Hydrogen-Bond Patterns in Proteins Using Network Motifs
    Bioinformatics , 25:000031370 (2009)
  • Shai Kaplan; Anat Bren; Alon Zaslaver; Erez Dekel; Uri Alon
    Diverse Two-Dimensional Input Functions Control Bacterial Sugar Genes
    Molecular Cell , 29:000020614 (2008) [PDF]
  • Shai Kaplan; Anat Bren; Erez Dekel; Uri Alon
    The Incoherent Feed-Forward Loop Can Generate Non-Monotonic Input Functions For Genes
    Molecular Systems Biology , 4:000020613 (2008) [PDF]
  • Uri Alon
    Network Motifs: theory and Experimental Approaches
    Nature Reviews Genetics , 8:000002655 (2007) [PDF]
  • Nitzan Rosenfeld; Jonathan W. Young; Uri Alon; Peter S. Swain; Michael B. Elowitz
    Accurate Prediction of Gene Feedback Circuit Behavior From Component Properties
    Molecular Systems Biology , 3:000032806 (2007)
  • Shalev Itzkovitz; Ron Milo; Nadav Kashtan; Reuven Levitt; Amir Lahav; Uri Alon
    Recurring Harmonic Walks and Network Motifs in Western Music
    Advances in Complex Systems , 9:000019710 (2006) [PDF]
  • Ziv Frankenstein; Uri Alon; Irun R. Cohen
    The Immune-Body Cytokine Network Defines a Social Architecture of Cell Interactions
    Biology Direct , 1:000013718 (2006) [PDF]
  • S Mangan; Shalev Itzkovitz; A Zaslaver; Uri Alon
    The Incoherent Feed-Forward Loop Accelerates the Response-Time of the Gal System of Escherichia Coli
    Journal of Molecular Biology , 356:000025952 (2006) [PDF]
  • Shiraz Kalir; Shmoolik Mangan; Uri Alon
    A Coherent Feed-Forward Loop With a Sum Input Function Prolongs Flagella Expression in Escherichia Coli
    Molecular Systems Biology , 1:000020395 (2005) [PDF]
  • Shalev Itzkovitz; Uri Alon
    Subgraphs and Network Motifs in Geometric Networks
    Physical Review E , 71:000019705 (2005) [PDF]
  • Shalev Itzkovitz; R Levitt; N Kashtan; Ron Milo; M Itzkovitz; Uri Alon
    Coarse-Graining and Self-Dissimilarity of Complex Networks
    Physical Review E , 71:000019709 (2005) [PDF]
  • Yeger-Lotem, E; Sattath, S; Kashtan, N; Itzkovitz, S; Milo, R; Pinter, RY; Alon, U; Margalit, H
    Network Motifs in Integrated Cellular Networks of Transcription-Regulation and Protein-Protein Interaction
    Proceedings of the National Academy of Sciences of the United States of America , (2004)
  • Ron Milo; Shalev Itzkovitz; N Kashtan; R Levitt; S Shen-Orr; I Ayzenshtat; Michal Sheffer; Uri Alon
    Superfamilies of Evolved and Designed Networks
    Science , 303:000027275 (2004) [PDF]
  • Ron Milo; Shalev Itzkovitz; N Kashtan; R Levitt; Uri Alon
    Response to Comment on &Quot;Network Motifs: Simple Building Blocks of Complex Networks&Quot; and &Quot;Superfamilies of Evolved and Designed Networks&Quot;
    Science , 305:000027274 (2004)
  • N Kashtan; Shalev Itzkovitz; Ron Milo; Uri Alon
    Efficient Sampling Algorithm For Estimating Subgraph Concentrations and Detecting Network Motifs
    Bioinformatics , 20:000020857 (2004) [PDF]
  • Shalev Itzkovitz; Ron Milo; N Kashtan; MEJ Newman; Uri Alon
    Reply to &Quot;Comment on 'Subgraphs in Random Networks' &Quot;
    Physical Review E , 70:000019711 (2004)
  • N Kashtan; Shalev Itzkovitz; Ron Milo; Uri Alon
    Topological Generalizations of Network Motifs
    Physical Review E , 70:000020858 (2004) [PDF]
  • S Mangan; Uri Alon
    Structure and Function of the Feed-Forward Loop Network Motif
    Proceedings of the National Academy of Sciences of the United States of America , 100:000025951 (2003) [PDF]
  • S Mangan; A Zaslaver; Uri Alon
    The Coherent Feedforward Loop Serves as a Sign-Sensitive Delay Element in Transcription Networks
    Journal of Molecular Biology , 334:000025953 (2003)
  • Itzkovitz S, Milo R, Kashtan N, Ziv G, Alon U.
    Subgraphs in Random Networks.
    Phys Rev e Stat Nonlin Soft Matter Phys , (2003) [PDF]
  • SS Shen-Orr; Ron Milo; S Mangan; Uri Alon
    Network Motifs in the Transcriptional Regulation Network of Escherichia Coli
    Nature Genetics , 31:000035830 (2002) [PDF]
  • Shen-Orr, SS; Milo, R; Mangan, S; Alon, U
    Network Motifs in the Transcriptional Regulation Network of Escherichia Coli
    Nature Genetics , (2002)