Network Motifs

  • Madar, D; Dekel, E; Bren, A; Alon, U
    Negative Auto-Regulation Increases the Input Dynamic-Range of the Arabinose System of Escherichia Coli
    Bmc Systems Biology , 5:111 (2011) [PDF] [SOM]
  • Shoval, O; Alon, U
    Snapshot: Network Motifs
    Cell , (2010)
  • Rahat, O; Alon, U; Levy, Y; Schreiber, G
    Understanding Hydrogen-Bond Patterns in Proteins Using Network Motifs
    Bioinformatics , (2009)
  • Kaplan, S; Bren, A; Dekel, E; Alon, U
    The Incoherent Feed-Forward Loop Can Generate Non-Monotonic Input Functions For Genes
    Molecular Systems Biology , (2008) [PDF]
  • Kaplan, S; Bren, A; Zaslaver, A; Dekel, E; Alon, U
    Diverse Two-Dimensional Input Functions Control Bacterial Sugar Genes
    Molecular Cell , (2008) [PDF]
  • Alon, U
    Network Motifs: theory and Experimental Approaches
    Nature Reviews Genetics , (2007) [PDF]
  • Rosenfeld, N; Young, JW; Alon, U; Swain, PS; Elowitz, MB
    Accurate Prediction of Gene Feedback Circuit Behavior From Component Properties
    Molecular Systems Biology , (2007)
  • Frankenstein, Z; Alon, U; Cohen, IR
    The Immune-Body Cytokine Network Defines a Social Architecture of Cell Interactions
    Biology Direct , (2006) [PDF]
  • Itzkovitz, S; Milo, R; Kashtan, N; Levitt, R; Lahav, A; Alon, U
    Recurring Harmonic Walks and Network Motifs in Western Music
    Advances in Complex Systems , (2006) [PDF]
  • Mangan, S; Itzkovitz, S; Zaslaver, A; Alon, U
    The Incoherent Feed-Forward Loop Accelerates the Response-Time of the Gal System of Escherichia Coli
    Journal of Molecular Biology , (2006) [PDF]
  • Itzkovitz, S; Alon, U
    Subgraphs and Network Motifs in Geometric Networks
    Physical Review E , (2005) [PDF]
  • Itzkovitz, S; Levitt, R; Kashtan, N; Milo, R; Itzkovitz, M; Alon, U
    Coarse-Graining and Self-Dissimilarity of Complex Networks
    Physical Review E , (2005) [PDF]
  • Kalir, S; Mangan, S; Alon, U
    A Coherent Feed-Forward Loop With a Sum Input Function Prolongs Flagella Expression in Escherichia Coli
    Molecular Systems Biology , (2005) [PDF]
  • Yeger-Lotem, E; Sattath, S; Kashtan, N; Itzkovitz, S; Milo, R; Pinter, RY; Alon, U; Margalit, H
    Network Motifs in Integrated Cellular Networks of Transcription-Regulation and Protein-Protein Interaction
    Proceedings of the National Academy of Sciences of the United States of America , (2004)
  • Itzkovitz, S; Milo, R; Kashtan, N; Newman, MEJ; Alon, U
    Reply to &Quot;Comment on 'Subgraphs in Random Networks' &Quot;
    Physical Review E , (2004)
  • Kashtan, N; Itzkovitz, S; Milo, R; Alon, U
    Efficient Sampling Algorithm For Estimating Subgraph Concentrations and Detecting Network Motifs
    Bioinformatics , (2004) [PDF]
  • Kashtan, N; Itzkovitz, S; Milo, R; Alon, U
    Topological Generalizations of Network Motifs
    Physical Review E , (2004) [PDF]
  • Milo, R; Itzkovitz, S; Kashtan, N; Levitt, R; Alon, U
    Response to Comment on &Quot;Network Motifs: Simple Building Blocks of Complex Networks&Quot; and &Quot;Superfamilies of Evolved and Designed Networks&Quot;
    Science , (2004)
  • Milo, R; Itzkovitz, S; Kashtan, N; Levitt, R; Shen-Orr, S; Ayzenshtat, I; Sheffer, M; Alon, U
    Superfamilies of Evolved and Designed Networks
    Science , (2004) [PDF]
  • Mangan, S; Alon, U
    Structure and Function of the Feed-Forward Loop Network Motif
    Proceedings of the National Academy of Sciences of the United States of America , (2003) [PDF]
  • Mangan, S; Zaslaver, A; Alon, U
    The Coherent Feedforward Loop Serves as a Sign-Sensitive Delay Element in Transcription Networks
    Journal of Molecular Biology , (2003)
  • Itzkovitz S, Milo R, Kashtan N, Ziv G, Alon U.
    Subgraphs in Random Networks.
    Phys Rev e Stat Nonlin Soft Matter Phys , (2003) [PDF]
  • Milo, R; Shen-Orr, S; Itzkovitz, S; Kashtan, N; Chklovskii, D; Alon, U
    Network Motifs: Simple Building Blocks of Complex Networks
    Science , (2002) [PDF]
  • Shen-Orr, SS; Milo, R; Mangan, S; Alon, U
    Network Motifs in the Transcriptional Regulation Network of Escherichia Coli
    Nature Genetics , (2002)
  • Shen-Orr Shai S, Milo Ron, Mangan Shmoolik, Alon Uri
    Network Motifs in the Transcriptional Regulation Network of Escherichia Coli.
    Nature Genetics , (2002) [PDF]