Open Day 2020 - Feinberg Graduate School
Department of Structural Biology
Overview
The functions of biological systems emerge from the structures of macromolecules, their conformational dynamics, and their higher order assembly. Determination of biomolecular structures and an understanding of their conformational changes and assembly properties provide great insights into biological mechanisms. Much of the research in structural biology at the Weizmann Institute is carried out in the Faculty of Chemistry, using a diverse set of cutting-edge research tools and methods. Investigators in the Structural Biology Department rely on the primary techniques for experimental structure determination, namely X-ray crystallography, NMR, and electron microscopy, but they also employ a variety of other specialized and emerging spectroscopic methods combined with creative molecular engineering to explore macromolecular structures, energetics, and dynamics. Experimental strategies are complemented by computational and theoretical approaches. Among the specific subjects of research in the department are ribosomes, protein chaperones, viruses, extracellular matrices, and biominerals. Processes being investigated include protein aggregation in cells, conformational dynamics of enzymes, formation of skeletal tissues, cell penetration by viruses, DNA recognition by proteins, and protein folding. Efforts are also directed towards the design of potential drugs. The wide variety of research activities in the department are based on a shared appreciation for the physical and chemical foundations of biological activities.
Department of Science Teaching
Overview
The Department is composed of groups working in mathematics, physics, chemistry, computer science, earth and environmental sciences, life sciences, and science and technology for junior-high school. In all these areas there are extensive research and development projects, aimed at (1) studying science and mathematics learning and teaching and their development, (2) producing and implementing improved and up-to-date learning and teaching materials that integrate the use of modern technologies, and (3) providing professional development for teachers, all over Israel. Work is based on an underlying philosophy that considers curriculum development and implementation, teacher professional development, research and evaluation as an interrelated and continuous long-term activity. Research studies focus on cognitive, socio-cultural and affective aspects of learning, teaching and learning to teach science and mathematics, using various research methodologies: quantitative, qualitative and mixed methods.
The department operates four national centers for science teachers (physics, chemistry, biology and science and technology in junior high school) specializing in; the development of leadership among science teachers and in continuous professional development for science teachers using effective models. Another avenue promoted by the department for professional development of science teachers is carried out through the Rothschild-Weizmann Program for Excellence in Science Teaching, which provides science teachers unique opportunities to expand and update their knowledge in science and in science education. In addition, the department runs numerous Professional Learning Communities of science teachers all over Israel. Projects in the department are funded by the Israel Science Foundation (ISF), the German Israeli Foundation (GIF), the Trump Foundation and the Israeli Ministry of Education through the Amos de-Shalit Israeli Center for Science Teaching (MALAM). In addition, the department is involved in several EU projects aiming at enhancing science education both in the formal as well as in the informal level.
Department of Plant and Environmental Sciences
Overview
Plants offer the world its only renewable resource of foods, alternative energy and biotherapeutic compounds. Plants have highly sophisticated short and long-term adaptive mechanisms to the environment as a result of the simple fact that they cannot alter their location during environmental change. Basic understanding of how plants react to the environment and why they grow the way they do are central to devising a rational approach to address three important global challenges, namely to secure more and healthier food, to develop novel plant-based products associated with biotherapeutics and to produce alternative energy resources in the form of biofuels. Research activities in the Department of Plant Sciences are associated with all of the above-mentioned global challenges and range from studies on the function and regulation of isolated genes to their interactive behavior in the context of the whole plant. We have developed extensive in-house genomic, bioinformatics and transgenic infrastructure that enables us to isolate novel genes by gene trapping, knockout or map-based cloning. Cloned genes are manipulated and studied by transgenic analysis to establish their potential in the whole plant. Our research as listed below integrates methodologies of molecular biology, protein modeling, genomics, metabolomics, bioinformatics, system biology, genetics, biochemistry and physiology.
Harnessing light energy and energy transduction in the plant cell: Research is carried out on the basic biophysical phenomenon of photon absorption by chlorophyll through transduction of this energy to ATP and the regulation of energy flux by the plant redox state.
Adaptive response in the plant to the biotic and abiotic environment: Molecular mechanisms that drive the cellular response are investigated under environmental perturbation. Research is directed in understanding the elements that play a role in the recognition of pathogens and the subsequent mounting of plant defense responses as well as in the response of plants to abiotic stresses, such as salt stress.
Plant metabolism and growth: Research is centered around elucidating regulatory metabolic networks for production of essential primary and secondary metabolites as well as understanding gene expression and hormonal networks that control plant metabolism, growth, reproduction and productivity.
Plant genome organization: Molecular tools have been developed to examine the fluidity of the plant genome, as described by transposon element, and the evolution of polyploid plants.
Department of Physics of Complex Systems
Overview
The Department of Physics of Complex Systems has research programs in fundamental and applied physics. Research in optics and atomic physics includes nonlinear optics, ultra fast optics and high harmonic generation, quantum optics, slow light, descrete optics, nano optics and nonlinear microscopy, laser cooling and trapping of atoms and ions, studies of Bose Einstein condensation, precision spectroscopy and quantum information processing. Theoretical and experimental research in soft condensed matter is concentrated on equilibrium and non-equilibrium statistical physics, clustering of data, bioinformatics and systems biology, electrokinetics of ions and charged particles in low dielectric liquids, colloids, soft materials and complex fluids. Experimental and theoretical hydrodynamics concentrates on turbulence, spatio-temporal chaos, turbulent Rayleigh-Benard convection, liquids at interfaces, droplet impact, sedimentation and dynamics of single micro-objects, such as polymers, vesicles, capsules and hydrodynamics of their solutions. Turbulence theory is developed in general and in applications to cloud physics. Classical and quantum chaos, statistics of nodal lines in quantum systems and turbulence are studied theoretically. Mathematical and computational methods for archaeological research are developed. Theoretical physical biology deals with modeling living information systems, their molecular components and the way they evolve. Experimental bio-physics deals with bio-molecules, neural cultures, neurophysics, physics of the brain, physics of bio-systems and decision making in ant colonies.
Department of Particle Physics and Astrophysics
Overview
The Department of Particle Physics and Astrophysics is engaged in both experimental and theoretical research, in various directions. These include elementary particle physics, field theory, string theory, theoretical astrophysics, observational astrophysics, particle astrophysics, relativistic heavy ion physics, molecular physics, nuclear physics, plasma physics, and radiation detection physics.
Department of Organic Chemistry
Overview
The areas of research in the Department of Organic Chemistry include synthetic and mechanistic organic and organometallic chemistry, novel reactions for organic synthesis, bond activation by metal complexes, polymeric reagents and catalysis. Bioorganic chemistry includes the studies of plant antiviral agents, the molecular mechanism of action of rhodopsin, artificial ion carriers and molecular sensors. Biological chemistry includes studies on structure,function, and mode of action of biologically active peptides and proteins; thermophilic enzymes; enzymes involved in DNA repair, DNA and RNA processing; studies of ordered, compact states of nucleic acids; and biomedical applications of EPR and NMR. Computational chemistry deals with the prediction of molecular properties by first principles (ab initio) and semiempirical quantum mechanical calculations..
Department of Neurobiology
Overview
Research in Neuroscience in the Department of Neurobiology encompasses a wide variety of subjects, in areas including cellular and molecular biology, neuroanatomy, functional magnetic resonance imaging (fMRI), physiology, pharmacology, psychophysics, and computational sciences.
Basically, the research of the various groups of the Department covers, among others, the following topics:
- Analysis of the molecular and cellular basis of neuronal and synaptic function.
- Imaging of neuronal activity underlying higher brain functions.
- Tracing and characterization of neuronal communication profiles.
- Characterization of the CNS response to trauma and lesion; developing molecular and cellular therapeutic agents.
- Determination of the underlying processes and mechanisms of vision, perception, learning, and memory in behaving rodents and primates.
- Computer modeling of brain function.
At the Neurobiology Department, the structure, function, development, and plasticity of the nervous system are studied at various levels of analysis, using different types of cell and experimental animal models. The groups studying neuronal function at the molecular and cellular levels use in vitro systems ranging from non-neuronal and neuronal cell lines to primary neuronal and glial cells of cerebellar, hippocampal and cortical origin. In many cases, the cells studied are transfected with genes of interest. These cell systems allow the study of the roles of various components of the nervous system, including cell surface membrane components, specific enzymes, neurotransmitters, neuromodulators, growth factors, neuroreceptors, lipid components, ionic channels and cytoskeletal constituents. Algorithms for the synaptic plasticity between neurons, and the role of dendritic ion channels in synaptic input and information processing, are also being studied. Injury models of nerve lesion and oxidative stress paradigms are applied to examine the principles of CNS regeneration, rescue from ischemia and stroke, and apoptotic cell death and senescence.
The groups studying the CNS at the system level are striving to understand the complex neuronal mechanisms underlying learning, memory, and sensory processing (vision, taste, smell), and to determine the relationship between brain and mind. Using track tracing methods, the rules governing the interconnections in the visual cortex are being unraveled. Behavioral studies focus on principles of learning and consolidation, cortical information processing, learning disabilities, and addiction. Functional brain imaging of the human visual cortex is being studied by various techniques, including fMRI. Psychophysical approaches are being used to define processes involved in image segmentation, learning and memory skill acquisition, motor control, and language. Nearly 20 groups of researchers carry out both independent studies and collaborative research with colleagues from within the Department and outside it.
Department of Molecular Genetics
Overview
The molecular basis of genetics and related biological processes are under investigation in our Department. The investigators approach these processes from the most reduced and reconstructed systems up to more systemic and computational analysis. Different organisms are employed including virus, yeast, Drosophila, mouse and human. These animal models and cell culture systems are used to study the mechanisms of;
a. Basic processes in gene expression, such as transcription, translation and protein degradation.
b. Cellular responses to various stimuli, such as cytokines, growth factors and exposure to DNA-damage.
c. Regulation of cell growth, senescence, differentiation and death.
d. Development; Mechanistic view of zygote to embryo transition and development of various organs, such as brain, muscles, bones and pancreas.
e. Genetic and acquired diseases such as cancer and virus infection. Embryonic stem cell biology, early development and advance human disease modeling.
f. Study of pluripotent stem cell biology and epigenetic reprogramming.
g. Computational and system biology. The function/evolution of genes and their diversification.