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April 23, 2012
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Date:13TuesdayNovember 2012Lecture
"Modifications of source-sink relationships lead to enhanced crops tolerance to abiotic stress"
More information Time 11:15 - 11:15Location Ullmann Building of Life SciencesLecturer Dr. Zvi Peleg
Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of JerusalemOrganizer Department of Plant and Environmental SciencesContact -
Date:13TuesdayNovember 2012Lecture
Structural clues to a visual function: direction selectivity in the retina
More information Time 13:00 - 13:00Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Sebastian Seung
MITOrganizer Department of Brain SciencesContact Abstract Show full text abstract about For a mechanistic understanding of brain function, it is imp...» For a mechanistic understanding of brain function, it is important to understand the relation between patterns of activity and connectivity in neural networks. My lab is studying this relation in the retina by classifying its neurons into cell types, and mapping the connections between types. I will describe preliminary results concerning the connections of the J type of ganglion cell, and what they suggest about the mechanism of its direction selectivity. To enable our neuroscience research, we have used machine learning and social computing to build systems that analyze light and electron microscopic images through a combination of artificial and human intelligence. The most exciting recent example is EyeWire, an online community that mobilizes the public to map the retinal connectome by playing a coloring game. I will conclude by describing our beginning efforts to search for the cell assembly, a pattern of connectivity hypothesized by Hebb in 1949 as a structural basis of long-term memory.
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Date:13TuesdayNovember 2012Lecture
Lectures on "Cancer Resistance" and "Our harmonious coexistence with the Epstein-Barr-Virus"
More information Time 13:30 - 13:30Location Wolfson Building for Biological ResearchLecturer Prof. Eva Klein & Prof. Georg Klein
Department of Microbiology, Tumor and Cell Biology Karolinska Institutet, Stockholm, SwedenOrganizer Department of Systems ImmunologyContact -
Date:14WednesdayNovember 2012Lecture
Forum on Mathematical Principles in Biology
More information Time 10:00 - 11:00Title Taking a census of the total proteome of the cellLocation Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. Ron Milo Organizer Department of Molecular Cell BiologyContact -
Date:14WednesdayNovember 2012Lecture
The Use Of Mathematics In Software Development
More information Time 11:00 - 11:00Location Jacob Ziskind BuildingLecturer Prof. David Parnas
McMaster University and University of LimerickOrganizer Faculty of Mathematics and Computer ScienceContact -
Date:14WednesdayNovember 2012Lecture
Tannakian formalism over fields with operators
More information Time 11:00 - 11:00Location Jacob Ziskind BuildingLecturer Dr. Moshe Kamensky
Organizer Faculty of Mathematics and Computer ScienceContact -
Date:14WednesdayNovember 2012Lecture
A single nitrogen-vacancy defect coupled to a nanomechanical oscillator
More information Time 13:15 - 13:15Location Edna and K.B. Weissman Building of Physical SciencesLecturer Signe Seidelin
Institute NeelOrganizer Department of Condensed Matter PhysicsContact Abstract Show full text abstract about We present a novel hybrid system consisting of a single Nitr...» We present a novel hybrid system consisting of a single Nitrogen Vacancy (NV) defect hosted in a diamond nanocrystal positioned at the extremity of a SiC nanowire. The nanowire acting as a nanoresonator is probed via time resolved nanocrystal fluorescence and photon correlation measurements. By immersing the system in a strong magnetic field gradient, we obtain a clear signature of a magnetic coupling between nanoresonator and the NV electronic spin. This is a first step towards entering two new fields of physics: Single photon optomechanics and Spin based nanomechanics -
Date:14WednesdayNovember 2012Lecture
Metabolic Syndrome Research Club
More information Time 15:00 - 15:00Title Insulin Resistance and insulin sensitivity 2012Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. Jesse Roth
Professor of Medicine, Albert Einstein College of Medicine, New YorkContact -
Date:15ThursdayNovember 2012Colloquia
Universally slow
More information Time 11:15 - 12:30Location Edna and K.B. Weissman Building of Physical SciencesLecturer Prof. Ariel Amir
Harvard UniversityOrganizer Faculty of PhysicsContact Abstract Show full text abstract about Glassy systems are very common in nature, from disordered el...» Glassy systems are very common in nature, from disordered electronic and magnetic systems to window glasses and crumpled paper. Among their key properties are slow relaxations to equilibrium without a typical timescale, and dependence of relaxation on the system's age. Understanding these phenomena is a long-standing problem in physics. After reviewing some of these physical systems, I will describe our approach to the problem, and show how it leads to a novel class of aging. The slow relaxations result from a broad distribution of `relaxation eigenmodes’, which relates to a particular class of random matrices. I will discuss recent results on the structure and localization properties of these modes, and their implications. -
Date:15ThursdayNovember 2012Lecture
Developing Recombinant Adeno-Associated Virus Therapies for Duchenne Muscular Dystrophy
More information Time 13:00 - 14:00Location Ullmann Building of Life SciencesLecturer Robert M. Kotin
Laboratory of Molecular Virology and Gene Therapy, NIHContact -
Date:16FridayNovember 2012Cultural Events
Meet the author Chaim Guri- Lecture
More information Time 11:00 - 13:00Title Accompanied by his daughter Yael, and the singer Maya YisraelitLocation Michael Sela AuditoriumContact -
Date:18SundayNovember 2012Lecture
Fast Parallel Matrix Multiplication
More information Time 11:00 - 11:00Location Jacob Ziskind BuildingLecturer Oded Schwartz
UC BerkeleyOrganizer Faculty of Mathematics and Computer ScienceContact -
Date:18SundayNovember 2012Lecture
Historical and future radiative forcing in the new generation of climate simulations
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Dr. Drew Shindell
NASA Goddard Institute for Space StudiesOrganizer Department of Earth and Planetary SciencesContact -
Date:18SundayNovember 2012Lecture
Modelling of electron and hole trapping at oxide grain boundaries and interfaces
More information Time 11:00 - 11:00Location Perlman Chemical Sciences BuildingLecturer Prof. Alex Shluger
Department of Condensed Matter and Materials Physics, University College of London, UKOrganizer Department of Molecular Chemistry and Materials ScienceContact -
Date:18SundayNovember 2012Lecture
Chemical Physics Lunch Club Seminar- Prof. Roi Baer, Nov 18, 2012
More information Time 12:30 - 13:30Title Orbital Energies in Density Functional ThoeryLocation Perlman Chemical Sciences BuildingLecturer Prof. Roi Baer
Fritz Haber Center for Molecular Dynamics, Institute of Chemistry, The Hebrew University of Jerusalem, ISRAELOrganizer Department of Chemical and Biological PhysicsContact Abstract Show full text abstract about In large molecular systems (from clusters to nanocrystals an...» In large molecular systems (from clusters to nanocrystals and solids) electrons strongly interact with each other and their total wave function is too difficult to understand or describe. The concept of a quasi-particle, going back to Landau, has turned out to be of huge importance. It allows us to understand and intuit about electronic structure and dynamics:
• Electron removal → creation of a positively charged “quasi-hole”.
• Electron insertion → creation of a negatively charged “quasi-electron”.
• Optical excitation → simultaneous creation of a quasi-hole and a quasi-electron. Attractive interaction between the two charges has to be taken into account (Mulliken’s rule).
However, quantitative description of quasi-particles is not an easy task; one method that can do this reasonably accu-rately is called the “GW” method. But GW is an extremely involved and numerically expensive method.
An alternative view, a completely different approach, is to map our real electronic system onto a virtual “non-interacting electron” one. Now, each electron has its own “orbital” and then:
• Electron removal → removal of an electron from an occupied orbital.
• Electron insertion → insertion of an electron into an unoccupied orbital.
• Optical excitation → transition of an electron from an occupied an unoccupied orbital.
Kohn-Sham density functional theories (KS-DFTs) provide such a mapping. Existing applications are numerically much cheaper than GW and supply, as auxiliary quantities, orbitals and orbital energies. Many researchers use these latter quantities in the manner described above. But for both practical and fundamental reasons this procedure often leads to serious errors.
In this talk I discuss the orbitals energies in KS-DFT stressing the fundamental and practical difficulties in viewing them as quasi-particle energies. I then present an approach to DFT we developed, “the optimally tuned range-separated hybrid”, which is better suited for producing orbital energies close to quasiparticle energies. I show this from both the fundamen-tal and practical points of view and I describe additional features of this approach.
Within time limits, I present some triumphs of the method, which succeeds where conventional DFT often fails bitterly. These include: the chemical bond between symmetric bi-radicals, ionization of water clusters, oxidation of aluminum clusters, charge-transfer excitations in molecules and molecular electronics.
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Date:18SundayNovember 2012Lecture
LDL Receptor as an entry route for VSV
More information Time 13:00 - 13:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Danit Finkelstein-Beker
Menachem Rubinstein's group, Dept. of Molecular GeneticsOrganizer Department of Molecular GeneticsContact -
Date:19MondayNovember 201221WednesdayNovember 2012Conference
Nanocomposites of inorganic
More information Time All dayContact -
Date:19MondayNovember 2012Lecture
Targeted Exome Capture and Paired-End Massively Parallel Sequencing Reveals New Mutations for Human Hereditary Deafness in the Middle East
More information Time 10:00 - 11:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Dr. Moien Kanaan
Department of Biological Sciences, Bethlehem University, BethlehemHomepage Contact Abstract Show full text abstract about Identification of genes responsible for medically important ...» Identification of genes responsible for medically important traits is a major challenge in human genetics. While classic techniques such as linkage analysis and Sanger sequencing have led to the discovery of over 100 genes for hearing loss, it appears that many more genes remain to be discovered. Exome capture and massively parallel sequencing can be exploited to address this challenge for hereditary deafness. A targeted capture pool was used for identifying mutations in all known human genes and human orthologs of mouse genes responsible for hearing loss. The Agilent SureSelect Target Enrichment system was used to capture the genomic regions harboring 284 genes including a total of 118 human protein-coding genes, three human microRNAs and the human orthologues of 163 genes associated with the inner ear or deafness in the mouse. The final capture design targeting 4,475 exons from the 284 genes was 1.86 Mb. The multiplexed libraries representing 96 Palestinian patients were analyzed with paired-end sequencing at a read length of 2x101 bp, using the Illumina HiSeq 2000. The median base coverage was 113-641X, with minimal coverage of 84% at 10 reads per base and 73% at 30 reads. SNP, indel and CNV analysis was performed. Coordination with homozygosity mapping in consanguineous families optimized bioinformatics analysis.Novel mutations in previously known human deafness genes were discovered. Protein structure predictions were made to provide insight into how the mutations lead to hearing loss. This strategy allows for improved diagnostics, facilitating discovery of the causative mutation in an economically and temporally-feasible manner and establishing an etiologically based genetic counseling and hearing loss management. -
Date:19MondayNovember 2012Lecture
A glass transition in population genetics: Emergence of clones in populations
More information Time 14:15 - 14:15Location Edna and K.B. Weissman Building of Physical SciencesLecturer Marija Vucelja
Courant Institute of Mathematics, NYUOrganizer Department of Physics of Complex SystemsContact Abstract Show full text abstract about Recombination reshuffles genetic material, while selection a...» Recombination reshuffles genetic material, while selection amplifies the fittest genotypes. If recombination is more rapid than selection, a population consists of a diverse mixture of many genotypes, as is observed in many populations. In the opposite regime selection can amplify individual genotypes into large clones. The occurrence of this "clonal condensation" depends, in addition to the ratio of recombination and selection rates, on the heritability of fitness (expected number of offspring). Clonal condensation is an important phenomenon, present in many populations, that has not been captured by traditional population genetics measures (linkage disequilibrium). I hope to convince you that our work provides a qualitative explanation of clonal condensation. In my talk I will point out the similarity between clonal condensation and the freezing transition in the Random Energy Model of spin glasses. Guided by this analogy I will derive one of the key quantities of interest: the probability that two individuals are genetically identical. This quantity is the analog of the spin-glass order parameter and it is also closely related to rate of coalescence in population genetics: two individuals that are part of the same clone have a recent common ancestor. Next I will analyze the phase space spanned by time, heritability and the ratio of recombination and selection rates. I will conclude with a summary of our present understanding of the clonal condensation phenomena and describe future directions. -
Date:19MondayNovember 2012Lecture
Predecessor Queries on Dynamic Subsets of an Ordered List, with Applications
More information Time 14:30 - 14:30Location Jacob Ziskind BuildingLecturer Tsvi Kopelowitz
Organizer Faculty of Mathematics and Computer ScienceContact
