Pages

January 01, 2013

  • Date:15SundayJuly 2018

    Interphase Human Chromosome Exhibits Out of Equilibrium Glassy Dynamics

    More information
    Time
    11:00 - 12:00
    Location
    Perlman Chemical Sciences Building
    LecturerProf. Dave Thirumalai
    Department of Chemistry, UT Austin
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Fingerprints of the three-dimensional organization of geno...»

    Fingerprints of the three-dimensional organization of genomes have emerged using recent advances, but genome dynamics is poorly understood. Here, we create the Chromosome Copolymer Model (CCM) by representing chromosomes as a copolymer with two epigenetic loci types corresponding to euchromatin and heterochromatin. We establish quantitatively that the chromosomes 5 and 10 topology from our model and from experiment are in good agreement. Chromatin exhibits glassy dynamics with coherent motion on micron scale. The broad distribution of the diffusion exponents, which quantitatively agrees with experiments, is suggestive of highly heterogeneous dynamics, reflected in the cell- to-cell variations in the contact maps. Chromosome organization is hierarchical, involving the formation of chromosome droplets, followed by coalescence, reminiscent of Ostwald ripening.

    Lecture
  • Date:16MondayJuly 2018

    PhD Defense Seminar - Elad Bassat

    More information
    Time
    08:30 - 08:30
    Title
    Agrin: at the heart of regeneration
    Location
    Wolfson Building for Biological Research
    LecturerElad Bassat (Prof. Eldad Tzahor Lab)
    Organizer
    Department of Molecular Cell Biology
    Contact
    Lecture
  • Date:17TuesdayJuly 2018

    Human physiological and behavioral responses to olfactory stimuli in health and disease

    More information
    Time
    12:30 - 12:30
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerLiron Rozenkrantz (PhD Thesis Defense)
    Noam Sobel Lab, Dept of Neurobiology, WIS
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about In my PhD I led three projects probing human behavioral and ...»
    In my PhD I led three projects probing human behavioral and physiological responses to olfactory stimuli in health and disease. In these projects I used every-day olfactory occurrences in order to infer on biological underpinnings of human behavior.
    In my main project I tested olfactory processing in autism, using the sniff response, a ten-minute non-verbal measure of respiratory response to odors. I found this objective measure to be profoundly altered in children with autism, and furthermore, to be highly correlated with autism severity. Using computational methods, I demonstrated 81% correct ASD classification based on differences in olfactory processing alone. These results provide proof-of-concept for a potential biomarker for autism (Rozenkrantz et al, Curr Bio, 2015).
    In a second and soon-to-be-submitted project, I investigated olfactory social communication in recurrent pregnancy loss (RPL), resting on a phenomenon in rodents in which females miscarry following exposure to bodily odors of non-stud males. I found that women with RPL display heightened social olfactory abilities, which were significantly correlated with number of miscarriages. Additionally, women with RPL showed significantly altered hormonal, physiological and neural responses to body odors of unfamiliar men. This project provides novel evidence for altered olfactory processing in human recurrent miscarriages.
    The third project is also my first foothold in placebo effect research, which I will pursue in my postdoc. Taking advantage of the non-invasive nature of olfactory stimuli, I used an odor as the placebo carrier, and tested two groups of subjects for different creativity tests. Both groups smelled the odor, but only the placebo group was told that it increases creativity (placebo manipulation). I found that following this simple manipulation, the placebo group displayed significantly enhanced creativity (Rozenkrantz et al., PLoS one, 2017).
    Taken together, these projects convey my deep interest in the interplay between human behavior and physiology.
    Lecture
  • Date:17TuesdayJuly 2018

    Link between Myosin architecture and stepping dynamics of F-Actin

    More information
    Time
    14:00 - 15:00
    Location
    Helen and Milton A. Kimmelman Building
    LecturerProf. Dave Thirumalai
    Department of Chemistry, UT Austin
    Organizer
    Department of Chemical and Structural Biology
    Contact
    Lecture
  • Date:18WednesdayJuly 2018

    Developmental Club Series 2017-2018

    More information
    Time
    10:00 - 10:00
    Title
    Lysosomal-Dependent Cell Death (LDCD) and PARP-1-Induced Cell Death (parthanatos): Distinct Steps that Inter(in)sect in a Single Pathway
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    LecturerProf. Eli Arama
    Organizer
    Department of Molecular Genetics
    Contact
    Lecture
  • Date:18WednesdayJuly 2018

    Chemical and Biological Physics Special Seminar

    More information
    Time
    13:00 - 13:00
    Title
    Studying Charge Transport in ‎Biological Systems using Single-‎Molecule Junctions
    Location
    Perlman Chemical Sciences Building
    LecturerProf. Ismael Diez Peres‎
    Department of Chemistry King's College, London
    Organizer
    Department of Chemical and Biological Physics
    Contact
    Lecture
  • Date:18WednesdayJuly 2018

    EGFR/Ceramide and lung cancer development under stress

    More information
    Time
    14:00 - 15:00
    Title
    Special Guest Seminar
    Location
    Max and Lillian Candiotty Building
    LecturerProf. Tzipi Goldkorn
    Genome Center, School of Medicine University of California at Davis
    Organizer
    Department of Immunology and Regenerative Biology
    Contact
    Lecture
  • Date:22SundayJuly 2018

    Thesis defence presentation by Gili Zilberman (Elinav Lab)

    More information
    Time
    10:30 - 11:30
    Title
    “In health and in sickness: Response to probiotics consumption in homeostatic and microbiome-perturbed adults.”
    Location
    Wolfson Building for Biological Research
    LecturerGili Zilberman
    Organizer
    Department of Systems Immunology
    Contact
    Lecture
  • Date:23MondayJuly 2018

    G-INCPM - Special Seminar - Prof. Jürgen Reichardt, Vice-Chancellor for Research and Innovation, Yachay Tech University, Ecuador - "Quo vadis, genoma? Lessons from Galactosemia, Prostate Cancer and Atherosclerosis"

    More information
    Time
    11:00 - 12:15
    Location
    Nancy and Stephen Grand Israel National Center for Personalized Medicine
    Organizer
    Department of Biomolecular Sciences
    Contact
    AbstractShow full text abstract about Juergen Reichardt will report on the genetic and biochemical...»
    Juergen Reichardt will report on the genetic and biochemical characterization of galactosemia mutations. Furthermore, he will
    describe the molecular epidemiology of prostate cancer, incl. the racial/ethnic variation of risk and the molecular and biochemical
    dissection of SNPs (single nucleotide polymorphisms), haplotypes and compound heterozygotes. These data will be related to prostate cancer prevention and the PCPT (the Prostate Cancer Prevention Trial) which enrolled 18,000 men in the US and Canada.
    Furthermore, Juergen will delve into the ongoing issues with SNP databases. Lastly, he will discuss future directions in the context of his career.
    Lecture
  • Date:23MondayJuly 2018

    Microphysics of atmospheric ice: primary and secondary ice formation mechanisms

    More information
    Time
    14:00 - 15:00
    Location
    Perlman Chemical Sciences Building
    LecturerDr. Alexei Kiselev
    Karlsruhe Institute of Technology , Institute of Meteorology and Climate Research
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Nucleation and growth of ice crystals in atmospheric clouds ...»
    Nucleation and growth of ice crystals in atmospheric clouds is an important process influencing clouds’ optical properties, precipitation, and lifetime. And yet, many aspects of ice microphysics are not completely understood. Traditionally, cloud properties are studied by aircraft measurements, or by creating artificial clouds in the expansion chambers. Quite often, however, such methods fail to reveal the underlying physical and chemical processes hidden at the microscopic level. For example, the heterogeneous freezing of supercooled cloud droplets can be enhanced by aerosol, but only one in ten thousand aerosol particles would serve as a potential ice-nucleating particle (INP). Understanding of what makes a good INP is required for the development of reliable cloud description in the climate models. Another example of an insufficiently understood process is the multiplication of ice crystals, a process that can lead to a rapid cloud glaciation without the need for high INP concentration.
    This talk will review our recent efforts on the characterization of ice nucleating properties of mineral dust on the example of feldspar, a rock-forming mineral that has been recently identified as an important component of atmospheric mineral dust aerosol. I will demonstrate how a coherent combination of several modern laboratory methods and atomistic simulations can deliver new insights into the nature of heterogeneous nucleation of ice. I will also discuss the production of secondary ice particles by freezing drizzle droplets observed with a high-speed video camera. This secondary ice production mechanisms, together with the well-known Hallett-Mossop ice splintering, has been suggested as one of the possible pathways of ice multiplication in the developed mixed-phase clouds. Finally, the atmospheric implication of the observed phenomena will be discussed.
    Lecture
  • Date:23MondayJuly 2018

    PhD Defense Seminar - Eran Kotler

    More information
    Time
    15:00 - 15:00
    Location
    Wolfson Building for Biological Research
    LecturerEran Kotler
    Organizer
    Department of Molecular Cell Biology
    Contact
    Lecture
  • Date:25WednesdayJuly 2018

    Metamaterials: Going Beyond What Nature Gives Us

    More information
    Time
    11:00 - 12:00
    Location
    Perlman Chemical Sciences Building
    LecturerProf. Amy Szuchmacher Blum
    Dept. of Chemistry, McGill University
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Material properties generally arise from the chemical identi...»
    Material properties generally arise from the chemical identities of the constituents. However, as our understanding of how electromagnetic waves interact with matter has grown, it has become possible to design materials whose properties depend on structure rather than composition to produce effects not seen before in nature. These newly developed materials, known as metamaterials, will be the focus of this talk. Metamaterials describe a class of materials in which material properties arise from the interaction of electromagnetic waves with the sub-wavelength sized component structures that constitute them.

    It has become clear that producing nano-based materials such as metamaterials requires breakthroughs in the ability to position materials with nanometer precision. This desire has led to a growing interest in bottom-up, self-assembling systems. Our approach is to use biomolecules as scaffolds because of the specificity and versatility they provide. The use of viruses as nanoscale scaffolds offers the promise of exquisite control for positioning, using a particle that can undergo further self-assembly into extended structures, and allowing the simultaneous creation of many identical complex submicron geometrical structures.

    Here, we present tobacco mosaic virus (TMV) coat protein as a template to produce nanostructured metamaterials. We construct plasmonically coupled nanorings on a sub-30nm size scale using a disk-shaped aggregate of TMV as a template. Computational models suggest that these rings may display metamaterial behavior at optical frequencies. Ensemble spectroscopic measurements reveal intriguing optical properties. Preliminary dark field scattering data, obtained for individual surface bound ring structures, is remarkably consistent with ensemble measurements, demonstrating that the observed optical properties arise from the ring structures. Thus, we show the utility of virus templates in generating nanostructured building blocks for advanced materials.
    Lecture
  • Date:26ThursdayJuly 2018

    Neural circuits for skilled forelimb movement

    More information
    Time
    11:00 - 11:00
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. Eiman Azim
    Molecular Neurobiology Laboratory Salk Institute for Biological Studies, La Jolla, CA
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Movement shapes our interactions with the world, providing a...»
    Movement shapes our interactions with the world, providing a means to translate intent into action. Among the wide repertoire of mammalian motor behaviors, the precise coordination of limb muscles to propel arms, hands and digits through space with speed and precision represents one of the more impressive achievements of the motor system. Skilled forelimb movements emerge from interactions between feedforward command pathways that induce muscle contraction and feedback systems that report and refine movement. Two broad classes of feedback modify motor output: one that originates in the periphery, and a second that is generated within the central nervous system itself. Yet the mechanisms by which these feedback pathways influence forelimb movement remain poorly understood.

    We take advantage of the genetic tractability of mice to examine the organization of motor circuits and define the ways in which these pathways enable dexterous behaviors. First, I will discuss recent studies that explore the transmission of proprioceptive and cutaneous signals from the forelimb into the spinal cord and brainstem, describing neural circuits that modulate the strength of this peripheral feedback and the implications of this sensory gain control for limb movement. Second, I will describe work exploring a diverse class of spinal interneurons that we hypothesize convey copies of forelimb motor commands as internal feedback to the cerebellum, enabling online predictions of motor outcome and reducing dependence on delayed sensory information. Through a complementary set of molecular, anatomical, electrophysiological and behavioral approaches, these findings are yielding insight into the organizational and functional logic of peripheral and internal feedback, and revealing how the circuits that convey feedback information help to orchestrate skilled behavior.


    Lecture
  • Date:26ThursdayJuly 2018

    Cancer persisters

    More information
    Time
    14:00 - 15:00
    Title
    Cancer Research Club
    Location
    Max and Lillian Candiotty Building
    LecturerProf. Ravid Straussman
    Dept. of Molecular Cell Biology, WIS
    Organizer
    Department of Immunology and Regenerative Biology
    Contact
    AbstractShow full text abstract about Persister cells are considered a unique, small sub-populatio...»
    Persister cells are considered a unique, small sub-population of cancer cells that maintain viability under anti-cancer treatments.
    Persisters do not harbor classic resistance-mediating genetic mutations, and their drug-resistance phenotype is thought to be reversible.
    I will describe our novel findings related to the persisters phenotype and how these findings can be exploited to rationally design novel drug combinations optimized to eliminate persisters.
    Lecture
  • Date:01WednesdayAugust 2018

    Ion irradiation in the technology of perpendicular magnetic tunnel junctions

    More information
    Time
    11:00 - 12:00
    Location
    Perlman Chemical Sciences Building
    LecturerProf. Nikolai A. Sobolev
    Department of Physics and I3N, University of Aveiro
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about The magnetic properties of ultrathin magnetic films and mult...»
    The magnetic properties of ultrathin magnetic films and multilayers, e.g. magnetic anisotropies and exchange coupling, strongly depend on the surface and interface structure. Chemical composition, crystallinity, grain sizes and their distribution govern the magnetic behaviour. All these structural properties can be modified by particle irradiation. Magnetic patterning without affecting the surface topography becomes feasible, which may be of interest in applications. Homogeneous ion irradiation through masks and focused ion beam and ion projection lithography can be applied for patterning. The creation of magnetic feature sizes down to a few ten nm is possible. The main areas are magnetic data storage applications, such as hard magnetic media with a large perpendicular magnetic anisotropy (PMA) or patterned media with an improved signal-to-noise ratio and magnetic sensor elements.
    The PMA is very common at magnetic metal/oxide interfaces. It is thought to be a result of electronic hybridization between the oxygen and the magnetic transition metal orbit across the interface. Interest in this phenomenon appeared in 2010 when it was demonstrated that the PMA at magnetic transition metal/oxide interfaces could be used to build out-of-plane magnetized magnetic tunnel junctions (MTJ) for spin-transfer-torque magnetic random access memory (STT-MRAM) cells. In these systems, the PMA at the CoFeB/MgO interface can be used to simultaneously obtain good memory retention, thanks to the large PMA amplitude, and a low write current, thanks to a relatively weak Gilbert damping.
    I’ll give a short overview over the irradiation experiments aiming at a modification of magnetic and magnetoresistive properties of different layered magnetic structures. Then I’ll describe in detail our recent experiments on ion irradiation of double-MgO free layers designed for application in perpendicular MTJ. The samples comprised a MgO / FeCoB / X / FeCoB / MgO layer stack, where X stands for an ultrathin (0.2 nm) Ta or W spacer. In particular, we have induced easy-cone states, with different cone angles, in thin (tFeCoB = 2.6 nm) free layers with a W spacer, initially exhibiting a uniaxial anisotropy. This easy cone only exists if K1 > 0, K2 < 0 and – K2 > 2K1, with K1 and K2 being the first- and second-order anisotropy constants. Easy-cone anisotropy may help reduce the stochasticity of the spin transfer torque switching. Importantly, no increase in the Gilbert damping after irradiation has been observed.
    Lecture
  • Date:01WednesdayAugust 2018

    Semiempirical Quantum Chemical Methods: Developments and Validation

    More information
    Time
    14:00 - 15:00
    Location
    Perlman Chemical Sciences Building
    LecturerDr. Pavlo O. Dral
    Max Planck Institute for Coal Research, Mülheim an der Ruhr
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Semiempirical quantum chemical (SQC) methods are indispensa...»
    Semiempirical quantum chemical (SQC) methods are indispensable for performing many computational chemistry studies. They are often used for exploring large systems and carrying out large number of computations within reasonable amount of time.
    My research is focused on the development of SQC methods based on the neglect of diatomic differential overlap (NDDO) integral approximation. In my presentation, I will first talk about our implementation of semiempirical unrestricted natural orbital–configuration interaction (UNO–CI) methods. They allow for black-box selection of active space orbitals, while being thousand times faster than common TD DFT techniques and often are as accurate or even better than TD DFT, which makes them useful for example in studies of organic photovoltaics materials. I will also show that semiempirical methods are useful for understanding unique electronic properties of carbon peopods used as ambipolar transistors and predicting reactivity of radicals via calculating unrestricted local electron affinities and ionization potentials.
    Then I will talk about orthogonalization-corrected methods (OMx).We benchmarked these methods against huge collection of accurate reference data to identify their strengths and weaknesses for groundand excited-state properties, and specifically for noncovalent interactions, to compare with traditional MNDO-based methods and to identify the direction of future developments. Among the reference data, the W4-11 benchmark set proved to be very useful for both validation and development of new orthogonalization- and dispersion-corrected methods (ODMx). The ODMx methods have been carefully designed to be generally better than OMx methods for both ground- and excited-state properties and are as good as OMx for noncovalent interactions.[10] The new methods have also more consistent formalism for calculating heats of formation.
    Finally, I will talk about how machine learning can be used to improve the accuracy of semiempirical methods.

    Lecture
  • Date:01WednesdayAugust 2018

    The role of TrpC2 channel in mediating social behavior of male mice within a group

    More information
    Time
    14:00 - 14:00
    Location
    Nella and Leon Benoziyo Building for Brain Research
    LecturerYefim Pen (PhD Thesis Defense)
    Tali Kimchi Lab, Dept of Neurobiology, WIS
    Organizer
    Department of Brain Sciences
    Contact
    Lecture
  • Date:12SundayAugust 2018

    Regulation of the blood-cerebrospinal fluid barrier as a gateway for leukocyte trafficking in physiology and pathology

    More information
    Time
    15:00 - 15:00
    Location
    Nella and Leon Benoziyo Building for Brain Research
    LecturerAlexander Kertser (PhD Thesis Defense)
    Michal Schwartz Lab, Dept of Neurobiology, WIS
    Organizer
    Department of Brain Sciences
    Contact
    Lecture
  • Date:13MondayAugust 2018

    Catecholamines in the hippocampal formation

    More information
    Time
    10:00 - 11:15
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerSima Verbitsky (PhD Thesis Defense)
    Menahem Segal Lab, Dept of Neurobiology, WIS
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Monoaminergic (noradrenergic, dopaminergic and serotonergic)...»
    Monoaminergic (noradrenergic, dopaminergic and serotonergic) modulation of hippocampal activity is assumed to play a major role in neuronal plasticity, learning and memory. Understanding the locus of action of these neuromodulators at the cellular level will expand our knowledge of their nature and allow us to identify issues related to their dysfunction. In the present work I study the effects of norepinephrine (NE) and dopamine (DA) on spontaneous and evoked activity in patch-clamped neurons of hippocampal slices. Both DA and NE induced a significant decrease in the amplitude of the evoked PSCs recorded from CA1 pyramidal neurons in response to stimulation of the Schaffer collaterals, accompanied by a small decrease in the cell input resistance, and a small hyperpolarization. While decreasing the evoked PSCs, NE promoted an overall increase in spontaneous synaptic activity. Pharmacological assessment of these results indicated an α1 adrenergic receptor involvement in both the decrease of the amplitude of evoked PSCs as well as the increase in spontaneous activity. Surprisingly, the effect of NE on evoked PSCs was partially antagonized by D1 dopaminergic receptor antagonist SCH23390, which suggests that NE activates dopamine receptors. The effect of DA on evoked PSCs was blocked by α1 adrenergic receptor antagonist prazosin, which suggests that DA, in turn, is activating adrenergic receptors.
    Noradrenergic system is highly affected by stress; in particular, the differences between NE effects in dorsal and ventral hippocampus (DH and VH, respectively) have been shown to change in stressed animals.
    In this work I used two types of stress protocols – Prenatal Stress (PS) and Acute Stress (AS) – to study the effect of stress on monoamine responses in slices of DH and VH. In non-stressed rats, NE effect on the evoked PSCs is larger in DH than in VH. PS and AS rats increased NE effect in VH, thus abolishing the difference between DH and VH. Pharmacological data suggests that these differences result from differential efficiencies of α1 and D1 receptors between DH and VH of both control and PS rats. Acute stress reversed the difference between PS and control rats; in the AS slices the PSC reduction was significantly different between DH and VH of PS rats, and not in control rats.
    I conclude that stress increases the NE modulation in VH, but not in DH, thus increasing the role of emotional processing associated with the VH.
    Lecture
  • Date:21TuesdayAugust 2018

    Clinical Research-Trials and Tribulations, Peril and Promise

    More information
    Time
    14:00 - 15:00
    Title
    Special Guest Roundtable Seminar
    Location
    Max and Lillian Candiotty Building
    LecturerProf. Adrian Langleben
    Director, Medical Oncology, Royal Victoria Hospital, McGill University. McGill University Department of Medical Oncology, Montreal, Canada
    Organizer
    Department of Immunology and Regenerative Biology
    Contact
    Lecture

Pages