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December 01, 2014
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Date:23TuesdayJanuary 2018Lecture
A deep 3D view into cells using cryo-scanning transmission electron tomography
More information Time 10:00 - 11:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Dr. Shron G. Wolf
Department of Chemical Research Support- WISOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about CryoSTEM tomography (CSTET) is a novel combination [1-5] of ...» CryoSTEM tomography (CSTET) is a novel combination [1-5] of two well-established techniques: cryo-electron tomography (CET) and scanning transmission electron microscopy (STEM). Cryogenic fixation allows for the most faithful preservation of biological macromolecules, tissues and cells. By preserving the cryogenic temperature and maintaining a contamination-free environment inside the electron microscope, CET for such cryo-preserved specimens have resulted in major advances in their characterization [6]. However, due to technical constraints, sample thickness amenable to viewing by CET is limited (up to ~400 nm).
STEM provides a possibility for relieving these limitations because contrast and signal are produced incoherently. The natural limit for sample thickness is extended three-fold for CSTET, meaning that whole vitrified mammalian cells can be imaged at ~3-4 nm resolution for regions up to ~1 μm in thickness. For spreading cells, many inter- organelle contacts and morphologies can be studied. In addition, CSTET combined with Energy Dispersive X-ray Spectroscopy (EDX) allows for on-the-spot chemical characterization of cell contents.
References
1. Wolf, S.G., L. Houben, and M. Elbaum, Cryo-scanning transmission electron tomography of vitrified cells. Nature Methods, 2014. 11(4): p. 423-428.
2. Wolf, S.G., P. Rez, and M. Elbaum, Phosphorus detection in vitrified bacteria by cryo- STEM annular dark-field analysis. J Microsc, 2015. 260(2): p. 227-33.
3. Elbaum, M., S.G. Wolf, and L. Houben, Cryo-scanning transmission electron tomography of biological cells. MRS Bulletin, 2016. 41(07): p. 542-548.
4. Wolf, S.G., E. Shimoni, M. Elbaum, and L. Houben, STEM Tomography in Biology, in Cellular Imaging, Electron Tomography and Related Techniques, E.G. Hanssen, Editor. 2017, Springer, in press.
5. Wolf, S.G., Y. Mutsafi, T. Dadosh, T. Ilani, Z. Lansky, B. Horowitz, S. Rubin, M. Elbaum, and D. Fass, 3D visualization of mitochondrial solid-phase calcium stores in whole cells. Elife, 2017. 6: e29929.
6. Beck, M. and W. Baumeister, Cryo-Electron Tomography: Can it Reveal the Molecular Sociology of Cells in Atomic Detail? Trends Cell Biol, 2016. 26(11): p. 825-837. -
Date:23TuesdayJanuary 2018Lecture
Students Seminar
More information Time 11:15 - 12:30Location Wolfson Building for Biological ResearchLecturer Prof. Uri Alon's lab Organizer Department of Molecular Cell BiologyContact -
Date:23TuesdayJanuary 2018Lecture
Photorespiration is an adaptive response of plants to oxidative stress
More information Time 11:30 - 11:30Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Prof. Agepati S. Raghavendra
FNA, FASc, FTWAS, JC Bose National Fellow, School of Life Sciences, Dept. of Plant Sciences, University of Hyderabad, Hyderabad, IndiaOrganizer Department of Plant and Environmental SciencesContact -
Date:23TuesdayJanuary 2018Lecture
Pay attention and learn from experience!: The transcriptional representation of experience and the role of the claustrum in attention
More information Time 12:30 - 12:30Location Gerhard M.J. Schmidt Lecture HallLecturer Dr. Ami Citri
ELSC, The Hebrew University of JerusalemOrganizer Department of Brain SciencesContact -
Date:24WednesdayJanuary 2018Lecture
Developmental Club Series 2017-2018
More information Time 10:00 - 10:00Title How a key interface between the brain’s neuro-hormonal and vascular systems is assembledLocation Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. Gil Levkowitz
Weizmann Institute of ScienceOrganizer Department of Molecular GeneticsContact -
Date:24WednesdayJanuary 2018Lecture
Laser induced homogeneous and oriented ice nucleation probed by ultrafast X-ray pulses
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Dr. Iftach Nevo
Dept. Materials and Interfaces, WISOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Illumination of supercooled microliter water drops on a hydr...» Illumination of supercooled microliter water drops on a hydrophobic glass slide with pulsed ns-laser beams induces ice nucleation. The type of the ice nucleation, heterogeneous or homogeneous is determined by the illumination configuration. When analyzing the enhancement of the X-ray diffraction peaks from frozen drops and the first appearance of diffraction peak from the growing nuclei in a liquid drop by X-ray pulse after each laser pulse, a correlation to the polarization state is seen. This points toward the mechanism where the electric field defines preferred direction for water molecules to bind via the interaction between laser-induced dipoles. Furthermore, the latter observations also reveal particle ice attachment during growth. Finally, different illumination configurations yield freezing temperatures that can be higher by about 10 °C than from non-irradiated water drops. -
Date:25ThursdayJanuary 2018Colloquia
Complexity-Theoretic Foundations of Quantum Supremacy Experiments
More information Time 11:15 - 12:30Location Edna and K.B. Weissman Building of Physical SciencesLecturer Scott Aaronson
UT AustinOrganizer Faculty of PhysicsContact Abstract Show full text abstract about In the near future, there will likely be special-purpose qua...» In the near future, there will likely be special-purpose quantum computers with 50 or so high-quality qubits and controllable nearest-neighbor couplings. In this talk, I'll discuss general theoretical foundations for how to use such devices to demonstrate "quantum supremacy": that is, a clear quantum speedup for *some* task, motivated by the goal of overturning the Extended Church-Turing Thesis (which says that all physical systems can be efficiently simulated by classical computers) as confidently as possible.
Based on joint work with Lijie Chen, https://arxiv.org/abs/1612.05903
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Date:25ThursdayJanuary 2018Lecture
Optogenetic fMRI and the Investigation of Global Brain Circuit Mechanisms
More information Time 14:00 - 14:00Location Gerhard M.J. Schmidt Lecture HallLecturer Jin Hyung Lee, PhD
Associate Professor of Neurology and Neurological Sciences, Bioengineering, Neurosurgery, and Electrical Engineering (Courtesy) Stanford UniversityOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Understanding the functional communication across brain has ...» Understanding the functional communication across brain has been a long sought-after goal of neuroscientists. However, due to the widespread and highly interconnected nature of brain circuits, the dynamic relationship between neuronal network elements remains elusive. With the development of optogenetic functional magnetic resonance imaging (ofMRI), it is now possible to observe whole-brain level network activity that results from modulating with millisecond- timescale resolution the activity of genetically, spatially, and topologically defined cell populations. ofMRI uniquely enables mapping global patterns of brain activity that result from the selective and precise control of neuronal populations. Advances in the molecular toolbox of optogenetics, as well as improvements in imaging technology, will bring ofMRI closer to its full potential. In particular, the integration of ultra-fast data acquisition, high SNR, and combinatorial optogenetics will enable powerful systems that can modulate and visualize brain activity in real-time. ofMRI is anticipated to play an important role in the dissection and control of network-level brain circuit function and dysfunction. In this talk, the ofMRI technology will be introduced with advanced approaches to bring it to its full potential, ending with examples of dissecting whole brain circuits associated with neurological diseases utilizing ofMRI.
Short Bio:
Dr. Lee received her Bachelor’s degree from Seoul National University and Masters and Doctoral degree from Stanford University, all in Electrical Engineering. She is a recipient of the 2008 NIH/NIBIB K99/R00 Pathway to Independence Award, 2010 NIH Director’s New Innovator Award, 2010 Okawa Foundation Research Grant Award, 2011 NSF CAREER Award, 2012 Alfred P. Sloan Research Fellowship, 2012 Epilepsy Therapy Project award, 2013 Alzheimer’s Association New Investigator Award, 2014 IEEE EMBS BRAIN young investigator award, and the 2017 NIH/NIMH BRAIN grant award. As an Electrical Engineer by training with Neuroscience research interest, her goal is to analyze, debug, and engineer the brain circuit through innovative technology.
1. Hyun Joo Lee†, Andrew Weitz†, David Bernal-Casas, Ben A. Duffy, Mankin Choy, Alexxai Kravitz, Anatol Kreitzer, Jin Hyung Lee*, Activation of direct and indirect pathway medium spiny neurons drives distinct brain-wide responses, Neuron, 2016;91(2):412-424.
2. Jia Liu†, Ben A. Duffy†, David Bernal-Casas, Zhongnan Fang, Jin Hyung Lee*, Comparison of fMRI analysis methods for heterogeneous BOLD responses in block design studies, Neuroimage, 2017;147:390-408.
3. David Bernal-Casas, Hyun Joo Lee, Andrew Weitz, Jin Hyung Lee*, Studying brain circuit function with dynamic causal modeling for optogenetic fMRI, Neuron, 2017;93:522-532.
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Date:25ThursdayJanuary 2018Cultural Events
The Israel Camerata Jerusalem
More information Time 20:00 - 20:00Title Lalo, Saint-Saens and HaydnLocation Michael Sela AuditoriumContact -
Date:27SaturdayJanuary 2018Cultural Events
Maestro ALEXANDER VASILIEV - Fashion historian
More information Time 19:00 - 19:00Title "secrets of Fashionable House"Location Michael Sela AuditoriumContact -
Date:28SundayJanuary 2018Lecture
A Martian Origin for the Mars Trojan Asteroids
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Dr. David Polishook
Department of Earth and Planetary SciencesOrganizer Department of Earth and Planetary SciencesContact -
Date:28SundayJanuary 2018Lecture
Personalized Nanomedicines: Principles for using nanotechnology in cancer research
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Prof. Avi Schroeder
Dept. Chemical Engineering, TechnionOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Medicine is taking its first steps towards patient-specifi...»
Medicine is taking its first steps towards patient-specific care. Nanoparticles have many potential benefits for treating cancer, including the ability to transport complex molecular cargoes including siRNA and protein, as well as targeting to specific cell populations.
The talk will address principles for engineering drug-loaded nanoparticles that can be remotely triggered to release their payload in disease sites. The evolution of such nanoparticles into programmed nano robots, unique particles that have an internal capacity to synthesize protein drugs, and their promise for treating cancer, will be discussed.
Our research is aimed at tailoring treatments to address each person’s individualized needs and unique disease presentation. Specifically, we developed barcoded nanoparticles that target sites of cancer where they perform a programmed therapeutic task. These systems utilize molecular-machines to improve efficacy and reduce side effects.
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Date:28SundayJanuary 2018Lecture
Molecular Genetics Departmental Seminars 2017-2018
More information Time 13:00 - 13:00Title "Metabolic enzyme coupling of Malate Dehydrogenases is enabled by piggybacking to peroxisomes".Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Shiran Maskit Organizer Department of Molecular GeneticsContact -
Date:28SundayJanuary 2018Lecture
Design and characterization of light-gated proteins for the investigation of medial prefrontal cortex function
More information Time 14:30 - 14:30Location Gerhard M.J. Schmidt Lecture HallLecturer Mathias Mahn (PhD Defense Thesis)
Ofer Yizhar Lab, Dept of Neurobiology, WISOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Reversible modulation of neuronal activity is a powerful app...» Reversible modulation of neuronal activity is a powerful approach for isolating the roles of specific neuronal populations in circuit dynamics and behavior. Optogenetics enables such experiments, through excitation and inhibition of defined cells within neural circuits. However, in contrast to optogenetic excitation, for which a limited number of optogenetic tools can serve to all but a few experimental needs, tools used for inhibition of neuronal activity still impose stringent constraints on the experimental paradigm. During the seminar I will present data showing that the optimal approach for optogenetic silencing differs between subcellular neuronal compartments, characterize current tools for axonal inhibition and introduce a set of soma-targeted naturally-occurring anion-conducting channelrhodopsins as the potential next generation of inhibitory optogenetic tools for somatodendritic silencing approaches in neuroscience. -
Date:29MondayJanuary 2018Lecture
Ultimate Dark Matter detector
More information Time 10:00 - 10:00Location Edna and K.B. Weissman Building of Physical SciencesLecturer Andrzej K. Drukier
OKC, University of StockholmOrganizer Department of Particle Physics and AstrophysicsContact Abstract Show full text abstract about We disclose an implementation of RT-bolometers which compris...» We disclose an implementation of RT-bolometers which comprise high chemical-energy materials, e.g. explosive or catalase, H2O2}-system, that can be operated at temperature between 4oC and room temperature (RT). Energy deposited by the incident weakly interacting particle to the nuclei can trigger a local release of chemical energy;. The energy release in such a `nano-explosion’ indicates that a coherent scattering event has taken place and allows for the localization of this event;
For DM detection {catalase, H2O2}-system is preferred, and there are many catalases, which have maximum activity at temperatures from about 10oC to about 90oC. This permits to optimize enzymatic reactions and influences the read-out design. {catalase, H2O2}-system works because the range of recoiling nuclei is so short that most of the energy is transferred in a single “voxel” called “vertex”, leading to a large local temperature increase.
When neutrino or WIMPs scatter on nuclei, the majority of the recoil nucleus energy is transferred to the lattice, which leads to the creation of ballistic phonons which rapidly thermalize, i.e. increase the temperature in vertex. For 5 GeV/c2 < MDM < 15 GeV/c2 the energy of the recoiling nuclei is 0.5-2.0 keV and all this energy is deposited within a few nm. Thus, the dE/dx = O(0.1 keV/nm) is deposited in the vertex. The energy deposition is much smaller in the case of single charged, relativistic particles and corresponds to dE/dx < 1 eV/nm for single charged particles. These permits background rejection.
We developed a very efficient read-out for such detectors. The expected detector cost is low, ca. $50,000 per ton. The deployment will be deep underwater, say at Marina Trench at depth of 11 km. Optionally, such a detector can be used as a “spaghetti detector” and placed in very deep bore-holes down to 20 km water equivalent.
Similar detectors can be used for Emission Geo-Neutrino Tomography aka Neutrino Geology. -
Date:29MondayJanuary 2018Lecture
Organization of temporal gene expression: from promoter cycles to circadian clocks
More information Time 13:30 - 13:30Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Dr. Felix Naef
The Institute of Bioengineering School of Life Sciences Ecole Polytechnique Federale de Lausanne (EPFL)Organizer Department of Molecular Cell BiologyContact -
Date:30TuesdayJanuary 2018Conference
A special symposium in honor of Prof. Ruhama Even
More information Time 08:00 - 08:00Location The David Lopatie Conference CentreChairperson Ronnie Karsenty -
Date:30TuesdayJanuary 2018Lecture
Noncoding RNA in Health and Disease
More information Time 10:00 - 11:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. Nikolaus Rajewsky
Scientific Director, Berlin Institute for Medical Systems Biology, Max Delbrück Center, BerlinOrganizer Azrieli Institute for Systems BiologyContact -
Date:30TuesdayJanuary 2018Lecture
Uncovering the mechanisms underlying individuality
More information Time 10:00 - 11:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Dr. Shay Stern
The Rockefeller University, NYOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Individuals within the same population may show stereotyped ...» Individuals within the same population may show stereotyped behaviors, but also unique behaviors that distinguish them from each other, a property called individuality. While individuality in behavior is widespread across species, including humans, the underlying mechanisms that generate individual-to-individual behavioral variation remain largely unknown. In my talk, I will present a newly developed imaging system for studying long-term individuality in C. elegans by monitoring the behavior of multiple individual animals across development, from egg hatching to adulthood, spanning a full generation time. I will show that while C. elegans animals have reproducible patterns of long-term behaviors, individuals within isogenic populations show consistent behavioral biases that persist across development and distinguish them from one another. I will further describe the conserved signaling pathways I uncovered that function to regulate long-term behavior, as well as to increase or decrease the degree of individuality across the population. These studies open a new window for dissecting mechanisms that generate and shape behavioral individuality across developmental timescales.
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Date:30TuesdayJanuary 2018Lecture
Joint Structural Biological and Magnetic Resonance Seminar
More information Time 14:30 - 14:30Title Solid-State NMR Studies of the Structure and Dynamics of an Influenza Membrane Protein for Proton Transport and Membrane ScissionLocation Gerhard M.J. Schmidt Lecture HallLecturer Prof. Mei Hong
Massachusetts Institute of TechnologyOrganizer Department of Chemical and Biological PhysicsContact Abstract Show full text abstract about Membrane proteins carry out a myriad of biological functions...» Membrane proteins carry out a myriad of biological functions such as ion conduction, substrate transport, and signaling. Solid-state NMR spectroscopy allows us to obtain exquisite atomic-level information of the structures and structural changes that underlie these functions. In this talk, I will present our investigations of the structure and dynamics of a multifunctional influenza virus membrane protein, matrix protein 2 (M2), which conducts protons and causes membrane scission. 13C, 15N, and 1H chemical shifts provided detailed information about pH-dependent conformational changes and equilibria between the open and closed states of the proton channel. Motionally averaged NMR spectra revealed microsecond-timescale dynamics of the proton-selective histidine and the gating tryptophan of the channel, while 2D exchange NMR spectra revealed millisecond-timescale dynamics of the entire tetrameric complex. Hydrogen bonding between water and the proton-selective histidine and proton exchange dynamics have been directly observed in 15N NMR spectra, giving insight into the atomic processes of proton transfer through the hydrated channel. In the second function, the M2 protein interacts with membrane cholesterol to cause scission of the emerging virus particle from the host cell in the final step of virus budding. By measuring 13C-19F distances between cholesterol and the protein, we determined the first cholesterol-binding site structure of a membrane protein in lipid bilayers. The structure gave unexpected insight into how M2 is attracted to the neck of the budding virus to cause membrane scission. Such intermolecular binding studies are crucially enabled by long-range distance constraints. We are exploring 19F-19F dipolar coupling measurements that probe distances up to 2 nm, to determine protein structures and protein-ligand interactions.
