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February 02, 2015
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Date:02MondayFebruary 2015Lecture
Foundations of Computer Science Seminar
More information Time 02:30 - 04:00Title Improved NP-inapproximability for 2-variable Linear EquationsLocation Jacob Ziskind BuildingLecturer Sangxia Huang
KTH Royal Institute of TechnologyContact Abstract Show full text abstract about An instance of the E2-Lin(2) problem is a system of equation...» An instance of the E2-Lin(2) problem is a system of equations of the form "x_i x_j = b (mod 2)". Given such a system in which it is possible to satisfy all but an epsilon fraction of the equations, we would like to find an assignment that violates as few equations as possible. In this paper, we show that it is NP-hard to satisfy all but a C*epsilon fraction of the equations, for any C < 11/8 and 0 < epsilon -
Date:02MondayFebruary 2015Colloquia
"Quantum Design in Carbon Nanotubes"
More information Time 11:00 - 12:30Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Shahal Ilani
Department of Condensed Matter Physics, WISOrganizer Faculty of ChemistryContact -
Date:02MondayFebruary 2015Lecture
Neural Basis of Motion Opponency in the Fly
More information Time 13:00 - 13:00Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Alexander Borst
Dept of Systems and Computational Neurobiology Max-Planck-Institute of Neurobiology Martinsried, GermanyOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Alexander Borst aims at understanding the foundations of inf...» Alexander Borst aims at understanding the foundations of information processing at the level of small neural circuits, focusing on the visual course control system in Drosophila. Borst’s lab uses a comprehensive approach , combining electron microscopy-aided anatomical reconstructions of the circuit, physiological characterization by both imaging and whole cell patch recordings, genetic circuit manipulation in behaving flies, computational modeling and last but not least, engineering of fly-inspired robots that implement the theoretical principles and test their functionality.
Borst’s outstanding research has yielded a very precise and detailed description of the circuit at the single cell resolution as well as a thorough understanding of the computations it performs.
Several of his major scientific contributions include the discovery that the direction of visually perceived motion is calculated following the Reichardt Model (Single & Borst, Science 1998), the separation of visual information in the fly brain into ON- and OFF-channels, similar to bipolar cells in the retina of vertebrate eyes (Jösch, Schnell, Raghu, Reiff & Borst, Nature 2010) and the existence of four types of neurons in each channel, tuned to one of the four cardinal directions (right, left, up, down) that project into four separate neuronal layers based on their preferred direction (Maisak et al, Nature 2013).
https://www.neuro.mpg.de/borst
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Date:02MondayFebruary 2015Lecture
HIF-1a regulation by septin 9
More information Time 14:00 - 14:00Location Max and Lillian Candiotty BuildingLecturer Prof. Nicola Mabjeesh
Dept. of Urology, Sourasky Medical Center, Tel AvivOrganizer Department of Immunology and Regenerative BiologyContact -
Date:02MondayFebruary 2015Lecture
Chiroptical Detection of Nonchromophoric and Achiral Guests by Enantiopure Alleno-Acetylenic Helicages
More information Time 14:00 - 15:00Location Helen and Milton A. Kimmelman BuildingLecturer Dr. Ori Gidron
Laboratory of Organic Chemistry, ETH Zurich, CH-8093 Zurich, SwitzerlandOrganizer Department of Molecular Chemistry and Materials ScienceContact -
Date:02MondayFebruary 2015Lecture
Quasicrystals: Basic notions through simple models
More information Time 14:15 - 14:15Location Edna and K.B. Weissman Building of Physical SciencesLecturer Ron Lifshitz Tel-Aviv University Organizer Department of Physics of Complex SystemsContact -
Date:02MondayFebruary 2015Lecture
Molecular Neuroscience Forum Seminar -Matthew Rasband
More information Time 15:00 - 16:00Title Ankyrin and spectrin-dependent assembly of axon membrane domainsLocation Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Matthew Rasband
Molecular and Cellular Biology Department of Neuroscience Baylor College of MedicineOrganizer Department of Biomolecular SciencesHomepage Contact -
Date:02MondayFebruary 2015Cultural Events
Seregei Zakharov Concert
More information Time 19:30 - 22:30Location Michael Sela AuditoriumContact -
Date:04WednesdayFebruary 2015Conference
Engineering the Brain
More information Time 09:00 - 14:00Location The David Lopatie Conference CentreContact -
Date:04WednesdayFebruary 2015Conference
Engineering the Brain
More information Time 09:00 - 14:00Location The David Lopatie Conference CentreContact -
Date:04WednesdayFebruary 2015Lecture
Forum on Mathematical Principles in Biology
More information Time 10:00 - 11:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchOrganizer Department of Molecular Cell BiologyContact -
Date:04WednesdayFebruary 2015Lecture
Deaminases, self-inflicted mutagenesis and cancer
More information Time 10:00 - 11:00Location Ullmann Building of Life SciencesLecturer Dr. Silvo Conticello, ITT Core Research Laboratory (CRL) Firenze, Italy Organizer Department of Biomolecular SciencesContact -
Date:05ThursdayFebruary 2015Colloquia
The quantum way of sensing
More information Time 11:15 - 12:30Location Edna and K.B. Weissman Building of Physical SciencesLecturer Joerg Wrachtrup
StuttgartOrganizer Faculty of PhysicsContact Abstract Show full text abstract about The precision of measurements is ultimately limited by quant...» The precision of measurements is ultimately limited by quantum mechanics. However, achieving the quantum limit in practical measurement application like sensing proves to be a significant challenge. Traditional sensing techniques often become subject to increasing levels of environmental noise especially in integrated designs or when the sensor size approaches small length scales. However, recently developed quantum control techniques originally targeting quantum information processing and communications show strategies to control quantum states even in noisy environment. Furthermore, specifically designed quantum states can enhance sensing precision when control is obtained. The talk shall describe na-noscale sensing of electric, magnetic fields, temperature etc. utilizing spin quantum sensors. Applications in such diverse areas like solid-state physics or cellular biology shall be discussed. -
Date:05ThursdayFebruary 2015Cultural Events
The Israel Camerata Jerusalem
More information Time 20:00 - 22:30Title Nature's wondersLocation Michael Sela AuditoriumContact -
Date:06FridayFebruary 2015Cultural Events
Philosophy of Winnie The Pooh and his freinds
More information Time 11:00 - 13:00Title Dr. Haim ShapiraLocation Dolfi and Lola Ebner AuditoriumContact -
Date:08SundayFebruary 2015Lecture
Machine learning: an essential tool for bioimage analysis
More information Time 10:00 - 10:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. Fred Hamprecht
Math and Computer Science department at Heidelberg UniversityContact Abstract Show full text abstract about Machine learning: an essential tool for bioimage analysis ...» Machine learning: an essential tool for bioimage analysis
Fred Hamprecht
The enormous throughput of modern imaging systems calls for automated quantitative analysis. Machine learning allows the user to provide a training set of examples of desired input-output pairs, rather than tweak multiple obscure parameters. As such, machine learning can be a powerful user-friendly paradigm for the analysis of massive biological imagery.
In this talk, I will show how machine learning has been packaged in the open source “ilastik” program. It is used for automated analysis, or as building block of more specialized pipelines, in fields ranging from cell and systems biology to developmental biology and the neurosciences. In particular, I will show how interactive machine learning can be used to conveniently train pixel or object level classifiers. I will also demonstrate a workflow for the tracking of multiple divisible objects, and indicate how we are about to make it “trainable”. ilastik works on monochrome or multichannel images with two or three spatial dimensions plus time.
The foregoing is a teaser for a hands-on ilastik workshop in the morning of Thursday, February 19th, when users are invited to bring and experiment with their own data.
Finally, I will give some intuition for the underlying machinery, and talk about ongoing work in structured learning for tracking and segmentation. The talk is guaranteed to be free of maths and code samples.
ilastik is open source and can be downloaded from http://ilastik.org. It is joint work with Stuart Berg, Kemal Eren, Burcin Erocal, Luca Fiaschi, Carsten Haubold, Bernhard Kausler, Ullrich Koethe, Anna Kreshuk, Thorben Kroeger, Martin Schiegg, Christoph Sommer, Christoph Straehle, Buote Xu.
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Date:08SundayFebruary 2015Lecture
Host-virus interactions at sea, and the implications on the life cycle of a bloom-forming marine microalgae
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Miguel Frada
Department of Plant and Environmental Sciences Weizmann Institute of ScienceOrganizer Department of Earth and Planetary SciencesContact Abstract Show full text abstract about The sunlit surface layer of the world’s oceans is ...» The sunlit surface layer of the world’s oceans is a critical biome for the functioning of the Earth system. It constitutes the habitat to a tremendous diversity of viral, bacterial and unicellular eukaryotic groups (autotrophic and heterotrophic) whose intricate populations structure and trophic interactions drive nearly half of the global primary productivity and is central in regulation of elemental cycles and climate homeostasis. In a decade where genomic tolls are enabling a robust assessment of the marine microbial biodiversity our understanding of the mechanisms underlying trophic interactions and the complexity of organisms’ life cycles is still fragmentary. Here, I present two studies that I have been developing over the last years. In a first study, we showed using both field observation and laboratorial experiments that copepods, abundant migrating crustaceans that graze on phytoplankton, as well as other zooplankton can accumulate and act as viral-vectors mediating the transmission of viruses infecting Emiliania huxleyi, a bloom-forming marine microalgae that plays an important role in the carbon cycle. We propose that such zooplankton-driven mechanism can boost host-virus contact rates and potentially accelerate the demise of large-scale phytoplankton blooms in the oceans. In a second study, we explore the mechanisms by which viral infections impact the life cycle of E. huxleyi. In earlier studies we demonstrated that the haploid phase of E. huxleyi is unrecognizable and therefore resistant to viruses that specifically kill the diploid phase, and that exposure of diploid cell to virus induces transition to a phenotypically-like haploid phase. We proposed that such escape strategy via life phase switch, the ‘‘Cheshire Cat’’ escape strategy, enables diploid blooming cells to evade viral attack. Recent morphological and genetic characterization of cells exposed to viruses starts now to shed light on the mechanisms underlying life phase transition dynamics, opening new perspectives of future research. -
Date:08SundayFebruary 2015Lecture
A systems biology approach to understanding how plants survive extreme water loss
More information Time 11:15 - 11:15Location Ullmann Building of Life SciencesLecturer Prof. Jill M. Farrant
Research Chair, Molecular Physiology of Plant Desiccation Tolerance, Molecular and Cell Biology Dept., University of Cape Town, South AfricaOrganizer Department of Plant and Environmental SciencesContact -
Date:08SundayFebruary 2015Lecture
Acceleration and Heating of the Solar Wind Plasma
More information Time 11:15 - 12:30Location Edna and K.B. Weissman Building of Physical SciencesLecturer Leon Ofman
Catholic University of America, Washington, DC; NASA Goddard Space Flight Center, Greenbelt, MD, and Visiting Associate Professor, Tel Aviv UniversityOrganizer Department of Particle Physics and AstrophysicsContact Abstract Show full text abstract about The solar wind is a stream of hot (T~106K) magnetized plasma...» The solar wind is a stream of hot (T~106K) magnetized plasma emerging from the Sun and expand into the interplanetary space at high speed of several hundred km/s. However, the exact plasma acceleration and heating mechanisms are not fully understood. The solar wind is classified in two types according to their coasting velocity: slow and fast. The slow solar wind reaches ~400 km/s is highly variable and dense compared to the fast wind streams, and is associated with coronal streamers. The fast wind is associated with coronal holes - regions of low-density plasma, and it is the dominant form of the solar wind during periods of solar minimum activity reaching asymptotic speed ~1000 km/s. The solar wind was observed by space probes from 0.29 AU and beyond, and was studied using remote-sensing spectroscopic observations at its sources in the corona. The magnetic and velocity fluctuations in the solar wind exhibit turbulent power spectrum that agrees with Kolmogorov turbulence scaling, and steeper spectrum in the kinetic resonant dissipation range. The fast solar wind ion temperature is often anisotropic with Tperp>Tparallel. Observations show that the slow and fast wind differ in heavy ion composition, and that heavy ion temperatures and speed, are often hotter than protons and electrons. The acceleration and heating of the solar wind was modeled in the past with single-fluid MHD equations. However, multi-fluid and kinetic modeling are required to account for the plasma properties, and study the heating processes of the solar wind heavy ions. I will present an overview of solar wind plasma observations, and show the results of solar wind plasma models using MHD, multi-fluid, and kinetic hybrid approaches that include heavy ions such as O5+, Mg9+, and He++. I will show results of synthetic UV observations that use the results of the models facilitating the interpretation of spectroscopic data. I will discuss the impact of the modeling on our current understanding of the solar wind plasma acceleration and heating and its sources in the solar corona. -
Date:08SundayFebruary 2015Lecture
A viral oncogene flips a tumor suppressor pathway to become oncogenic
More information Time 13:00 - 13:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Matan Shanzer
Yosef Shaul's group, Dept. of Molecular GeneticsContact
