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February 18, 2016
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Date:25ThursdayFebruary 2016Colloquia
Programmable ‘artificial cells’ on silicon: Bringing biology to the chip
More information Time 11:15 - 12:30Location Edna and K.B. Weissman Building of Physical SciencesLecturer Roy Bar Ziv
WISOrganizer Faculty of PhysicsContact Abstract Show full text abstract about The assembly of artificial cells capable of executing DNA pr...» The assembly of artificial cells capable of executing DNA programs has been an important goal for basic research and technology. We assemble 2D DNA compartments fabricated in silicon as ‘artificial cells’ capable of metabolism, programmable protein synthesis, and communication. We programmed gene expression cycles in separate compartments, as well as protein synthesis fronts propagating in a coupled 1D system of compartments. Gene expression in the DNA compartments reveals a rich, dynamic system that is controlled by geometry. The organization of matter in the compartment suggested conditions for controlled assembly of biological machines. This puts forth a man-made biological system with programmable information processing from the gene to a ‘cell’, and up to the ‘multicellular’ scale.
References:
A. Tayar, E. Karzbrun, V. Noireaux, R.H. Bar-Ziv, Propagating gene expression fronts in a one-dimensional coupled system of artificial cells. Nature Phys. 11, 1037–1041 (2015).
E. Karzbrun, A. M. Tayar, V. Noireaux, R.H. Bar-Ziv, Programmable on-chip DNA compartments as artificial cells. Science. 345, 829–832 (2014).
D. Bracha, E. Karzbrun, G. Shemer, P. A. Pincus, R.H. Bar-Ziv, Entropy-driven collective interactions in DNA brushes on a biochip. Proc. Natl. Acad. Sci. U. S. A. 110, 4534–8 (2013).
Y. Heyman, A. Buxboim, S. G. Wolf, S. S. Daube, R.H. Bar-Ziv, Cell-free protein synthesis and assembly on a biochip. Nature Nanotech. 7, 374–378 (2012).
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Date:25ThursdayFebruary 2016Lecture
LIfe Science Lecture
More information Time 15:00 - 16:30Title Prof. Guy ShakharLocation Dolfi and Lola Ebner AuditoriumLecturer Prof. Guy Shakhar
Department of ImmunologyContact -
Date:25ThursdayFebruary 2016Lecture
Morphological Control Over Pyridine Based Metal Organic Frameworks
More information Time 15:30 - 16:30Location Helen and Milton A. Kimmelman BuildingLecturer Shira Hamami Organizer Department of Molecular Chemistry and Materials ScienceContact -
Date:28SundayFebruary 201629MondayFebruary 2016Conference
The 28th meeting of the Israeli mass spectrometry society - Joint with the British society
More information Time All dayLocation The David Lopatie Conference CentreChairperson Michal SharonContact -
Date:28SundayFebruary 2016Lecture
Deciphering Jupiter's internal flow using the Juno gravity measurements and an adjoint based dynamical model
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Dr. Eli Galanti
Earth and Planetary Sciences Weizmann Institute of ScienceOrganizer Department of Earth and Planetary SciencesContact Abstract Show full text abstract about The nature of the large-scale flow below the cloud level on ...» The nature of the large-scale flow below the cloud level on Jupiter is still unknown. The observed surface wind might be confined to the upper layers, or be a manifestation of deep cylindrical flow. Moreover, it is possible that in the case where the observed wind is superficial, there exists deep flow that is completely separated from the surface. During the years 2016-17 Juno will both perform close flybys of Jupiter, obtaining a high precision gravity spectrum for the planet. This data can be used to estimate the depth of Jupiter observed cloud-level wind, and decipher a possible deep flow that is decoupled from the surface wind. In this talk I will discuss the Juno gravity experiment and the possible outcomes with regard to the flow on Jupiter.
We explore the possibility of complex wind dynamics that include both the upper-layer wind, and a deep flow that is completely detached from the flow above it. The surface flow is based on the observed cloud-level flow and is set to decay with depth. The deep flow is constructed synthetically to produce cylindrical structures with variable width and magnitude, thus allowing for a wide range of possible setups of the unknown deep flow. The combined 3D flow is then related to the density anomalies via a dynamical model and the resulting density field is then used to calculate the gravitational moments. An adjoint inverse model is constructed for the dynamical model, thus allowing backward integration of the dynamical model, from the expected observations of the gravity moments to the parameters controlling the setup of the deep and surface flows.
We show that the model can be used for examination of various scenarios, including cases in which the deep flow is dominating over the surface wind. The novelty of our adjoint based inversion approach is in the ability to identify complex dynamics including deep cylindrical flows that have no manifestation in the observed cloud-level wind. Furthermore, the flexibility of the adjoint method allows for a wide range of dynamical setups, so that when new observations and physical understanding will arise, these constraints could be easily implemented and used to better decipher Jupiter flow dynamics.
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Date:28SundayFebruary 2016Lecture
Expression homeostasis during DNA replication
More information Time 13:00 - 13:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Raz Bar-Ziv
Naama Barkai's group, Dept. of Molecular Genetics,WISOrganizer Department of Molecular GeneticsContact -
Date:28SundayFebruary 2016Lecture
Diffusion-consumption kinetics and localization in cytokine communication between T cells
More information Time 13:15 - 13:15Location Edna and K.B. Weissman Building of Physical SciencesLecturer Prof. Oleg Krichevsky
Ben Gurion UniversityOrganizer Clore Center for Biological PhysicsContact Abstract Show full text abstract about Cells of the immune system cooperate their activity by secre...» Cells of the immune system cooperate their activity by secreting small proteins – cytokines.
The cytokines binding to their receptors on a receiving cell causes a chain of signaling events that determine the fate of the cell: its survival, differentiation and proliferation. We argue that the competition between cytokine diffusion and
its consumption by a receiving cell sets a characteristic length that defines the spatial extent of cytokine communication.
On the example of interleukin-2 cytokine we demonstrate both in vitro and in vivo that the cytokine fields can be localized to the vicinity of the secreting cell, and we find that a simple diffusion/consumption mechanism provides an adequate explanation for such localization.
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Date:28SundayFebruary 2016Lecture
Super-resolution microscopy and the 3D distribution of proteins on cellular membranes
More information Time 15:00 - 16:00Location Camelia Botnar BuildingLecturer Prof. Gilad Haran
Department of Chemical PhysicsOrganizer Department of Life Sciences Core FacilitiesContact -
Date:29MondayFebruary 2016Colloquia
Schmidt Lecture - "Stimuli-Responsive Smart Soft Materials"
More information Time 11:00 - 12:30Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Takuzo Aida
Department of Chemistry and Biotechnology School of Engineering, The University of TokyoOrganizer Faculty of ChemistryContact Abstract Show full text abstract about Machine technology frequently puts magnetic or electrostati...» Machine technology frequently
puts magnetic or electrostatic
repulsive forces to practical use,
as in maglev trains, vehicle
suspensions or non-contact
bearings. In contrast, materials
design overwhelmingly focuses
on attractive interactions, such
as in the many advanced
polymer-based composites, where inorganic fillers interact with a polymer matrix to improve
mechanical properties. However, articular cartilage strikingly illustrates how electrostatic repulsion
can be harnessed to achieve unparalleled functional efficiency: it permits virtually frictionless
mechanical motion within joints, even under high compression. Here we describe a composite
hydrogel with anisotropic mechanical properties dominated by electrostatic repulsion between
negatively charged unilamellar titanate nanosheets embedded within it. Crucial to the behaviour of this
hydrogel is the serendipitous discovery of cofacial nanosheet alignment in aqueous colloidal
dispersions subjected to a strong magnetic field, which maximizes electrostatic repulsion6 and thereby
induces a quasi-crystalline structural ordering over macroscopic length scales and with uniformly
large face-to-face nanosheet separation. We fix this transiently induced structural order by
transforming the dispersion into a hydrogel using light-triggered in situ vinyl polymerization. The
resultant hydrogel, containing charged inorganic structures that align cofacially in a magnetic flux,
deforms easily under shear forces applied parallel to the embedded nanosheets yet resists compressive
forces applied orthogonally. We anticipate that the concept of embedding anisotropic repulsive
electrostatics within a composite material, inspired by articular cartilage, will open up new
possibilities for developing soft materials with unusual functions. -
Date:29MondayFebruary 2016Lecture
The landscape of DNA methylation in cancer; therapeutic and diagnostic implications
More information Time 14:00 - 14:00Title Cancer Research Club SeminarLocation Raoul and Graziella de Picciotto Building for Scientific and Technical SupportLecturer Dr. Moshe Szyf Organizer Department of Immunology and Regenerative BiologyContact -
Date:29MondayFebruary 2016Lecture
Resilience of Multidimensional Complex Systems
More information Time 14:15 - 14:15Location Dannie N. Heineman LaboratoryLecturer Baruch Barzel
Bar-Ilan UniversityOrganizer Department of Physics of Complex SystemsContact Abstract Show full text abstract about Resilience is a system's ability to cope with change, o...» Resilience is a system's ability to cope with change, or to bounce back after stress. The loss of resilience in a natural system occurs when the stress exceeds a certain threshold, beyond which the system loses its ability to bounce back and retain proper functionality. For instance, when the loss of trees in a forest (deforestation) crosses a tipping point and the forest turns barren, or when the load on the electrical power grid becomes too high and a massive power failure emerges. The challenge is that most complex systems are multidimensional, disordered and described by nonlinear dynamics - characteristics that firmly avoid analytical treatment. We address this challenge by showing how to map a complex system into an effective one dimensional equation, exposing the universal patterns of resilience exhibited by diverse systems, from ecological to technological networks. Along the way we will understand why systems lose resilience all of a sudden, learn how to predict such resilience loss and show how to fortify a system to become more resilient.
J. Gao, B. Barzel, A-L Barabasi, Nature 530, 307 (2016).
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Date:01TuesdayMarch 2016Lecture
A brief history of DNA repair Tribute to the 2015 Chemistry Nobel Prize laureates
More information Time 10:00 - 11:00Location Wolfson Building for Biological ResearchLecturer Prof. Zvi Livneh
Dept. of Biomolecular Sciences-WISOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about DNA damage is continuously formed at a staggering rate of ab...» DNA damage is continuously formed at a staggering rate of about 50,000 lesions/genome/day, which may cause severe malfunction during DNA replication and transcription. Therefore, life as we know it depends on DNA repair mechanisms, and germ-line mutations in DNA repair genes cause a broad spectrum of human disease including cancer, immunological deficiencies and neurodegenerative diseases. The 2015 Nobel Prize in Chemistry was awarded to Thomas Lindahl, Paul Modrich and Aziz Sancar, who made fundamental contributions to deciphering molecular mechanisms of DNA repair. A brief history of DNA repair will be presented, highlighting the contributions of the Nobel Prize laureates. -
Date:01TuesdayMarch 2016Lecture
“Recent LHC results”
More information Time 11:00 - 11:00Location Edna and K.B. Weissman Building of Physical SciencesLecturer Maria Spiropulu
CaletechOrganizer Department of Particle Physics and AstrophysicsContact -
Date:01TuesdayMarch 2016Lecture
Methionine, a master metabolite in plant seeds?!
More information Time 11:15 - 11:15Location Ullmann Building of Life SciencesLecturer Dr. Hagai Cohen
Prof. Asaph Aharoni’s Lab., Dept. of Plant & Environmental SciencesOrganizer Department of Plant and Environmental SciencesContact -
Date:01TuesdayMarch 2016Lecture
High Energy Density Materials at Sandia: Investigations in Planetary Science
More information Time 11:15 - 11:15Location Edna and K.B. Weissman Building of Physical SciencesLecturer Dawn Flicker
Pulsed Power Sciences Center, Sandia National LaboratoriesOrganizer Department of Particle Physics and AstrophysicsContact Abstract Show full text abstract about The structure and evolution of planets is determined by mate...» The structure and evolution of planets is determined by material behavior at high pressure. Such high pressures can only be achieved at High Energy Density (HED) facilities like Sandia’s Z machine and high-power laser facilities. Z stores 22MJ of energy that is released in pulses of up to 25MA peak current with 200-1000ns rise times. The large currents generate strong magnetic fields that can be used to create high pressures in dynamic material experiments. This capability enables evaluation of material equation-of-state and other properties in extreme conditions. I will present three examples using experimental results from the Z machine to answer long-standing questions in planetary science. First, solar system evolution models have been unable to consistently account for observations of Jupiter and Saturn. Recent Z observations of a first-order liquid-liquid insulator to metal transition in hydrogen may shed light on this discrepancy. Second, measurements of iron vaporization may address troubling differences between models of the Earth’s moon forming event and observations of the Earth and moon’s compositions. Finally, precise measurements of high-pressure water were used to validate DFT models which in turn informed planetary structure models suggesting an explanation of the multi-polar magnetic fields of Neptune and Uranus.
The Z Fundamental Science Program (ZFSP), which enables the academic community to take advantage of the facility enabling much of this work, will be described.
Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-AC04-94AL85000.
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Date:01TuesdayMarch 2016Lecture
Sex differences in neuropsychological disorders: Why should we care?
More information Time 12:30 - 12:30Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Anat Biegon
Director, Center on Gender, Hormones and Health Stony Brook University School of Medicine, NYOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Gender differences affect the prevalence, presentation, trea...» Gender differences affect the prevalence, presentation, treatment response and outcome of many neuropsychiatric disorders; including Alzheimer's disease, multiple sclerosis, depression and anxiety. However, despite a female majority among sufferers of these disorders, women were historically excluded from clinical trials; and the overwhelming majority preclinical studies on disease mechanisms and new drug development are conducted exclusively on males. Consequently, women are 50% more likely than men to experience adverse drug reactions, and between 1997 and 2001, 80% of the drugs removed from the market were specifically implicated in adverse side effects or deaths of female patients.
Drawing on examples from diverse neuropathologies, the talk will describe the current status and the future potential of research and education on gender based medicine; aiming to level the field and gain insight into the influence of sex an gonadal hormones on CNS physiology and pathology.
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Date:01TuesdayMarch 2016Lecture
Probing the atomic Higgs force and beyond
More information Time 13:15 - 13:15Location Edna and K.B. Weissman Building of Physical SciencesLecturer Prof. Roee Ozeri, Prof. Gilad Perez
Weizmann InstituteOrganizer Department of Particle Physics and AstrophysicsContact -
Date:02WednesdayMarch 2016Lecture
Pelletron Series - by invitation
More information Time All dayContact -
Date:02WednesdayMarch 2016Lecture
G-INCPM-Special Seminar - Irit Paz, Ph.D, GLocal Sales Manager, Takara Bio Europe SAS - SMARTer® Solutions for Next-Gen Sequencing
More information Time 10:00 - 11:30Location Nancy and Stephen Grand Israel National Center for Personalized MedicineLecturer Irit Paz, Ph.D
GLocal Sales Manager, Takara Bio Europe SASOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Next-generation sequencing (NGS) has increased our understan...» Next-generation sequencing (NGS) has increased our understanding of biological phenomena and human disease by enabling highly sensitive transcriptome analysis across a large dynamic range of RNA expression levels. As exciting new applications for NGS emerge, Clontech continues to develop powerful new tools for life science research by improving and building upon its core technologies. A common feature of Clontech® NGS kits is SMART® technology, which harnesses the template-switching activity of customized reverse transcriptases to enable researchers to analyze their most challenging samples, such as ultra-low input or single-cell RNA, noncoding RNA, and RNA from degraded samples. In particular, single-cell RNA-seq is one of the fastest-growing applications of NGS, and the SMARTer Ultra® Low mRNA-seq family of products, featuring a highly sensitive, dT-primed mechanism, has become the gold standard for this type of analysis. The newest generations of ultra-low input/single-cell mRNA-seq and picogram-input total RNA-seq kits have brought increased sensitivity to SMART technology by improving upon the SMART-Seq® method and incorporating locked nucleic acid (LNA) technology. Expanding applications for SMART technology have led to a ligation-free method for generating ChIP (chromatin immunoprecipitation) sequencing libraries. This seminar will take you on a tour of these new technologies and highlight ongoing research on a variety of NGS applications, including single-cell RNA-seq.
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Date:02WednesdayMarch 2016Colloquia
Creating, Controlling, and Diagnosing High Energy Density Matter with the National Ignition Facility
More information Time 11:00 - 12:00Location Edna and K.B. Weissman Building of Physical SciencesLecturer Mark Herrmann
National Ignition Facility Director, Lawrence Livermore National LaboratoryOrganizer Faculty of PhysicsContact Abstract Show full text abstract about The National Ignition Facility (NIF), at Lawrence Livermore ...» The National Ignition Facility (NIF), at Lawrence Livermore National Laboratory, is the world’s most energetic laser and it has been in routine operation since 2009. NIF consists of 192 beams that can deliver over 1.8 MJ of ultraviolet energy in a few nanoseconds. These beams deliver >400 TW of power to targets much smaller than a cm3. The deposition of this energy in a small volume creates extreme radiation environments and large pressures in materials. These very large pressures and radiation environments can be used to create matter at high energy densities (usually defined by an energy density exceeding about 0.1 MJ/cm3 or pres-sures greater than 106 times atmospheric pressure). NIF is used to perform state of the art ex-periments in the field of high energy density science, enabling us to address many fundamen-tal questions on the behavior of matter at high pressures. Particular areas of focus include the study of materials that make up planetary interiors and exploring astrophysics related phe-nomena in the laboratory. A primary goal of the NIF is to obtain thermonuclear fusion ignition in the laboratory by using x-rays to compress fusion fuel to extreme conditions. In this talk, I will provide an overview of the National Ignition Facility and some of the amazing technology that enables it. I will discuss recent progress in high energy density science and inertial con-finement fusion, and talk about the challenges and opportunities for future research.
