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February 18, 2016

  • Date:25ThursdayFebruary 2016

    Programmable ‘artificial cells’ on silicon: Bringing biology to the chip

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    Time
    11:15 - 12:30
    Location
    Edna and K.B. Weissman Building of Physical Sciences
    LecturerRoy Bar Ziv
    WIS
    Organizer
    Faculty of Physics
    Contact
    AbstractShow full text abstract about The assembly of artificial cells capable of executing DNA pr...»
    The assembly of artificial cells capable of executing DNA programs has been an important goal for basic research and technology. We assemble 2D DNA compartments fabricated in silicon as ‘artificial cells’ capable of metabolism, programmable protein synthesis, and communication. We programmed gene expression cycles in separate compartments, as well as protein synthesis fronts propagating in a coupled 1D system of compartments. Gene expression in the DNA compartments reveals a rich, dynamic system that is controlled by geometry. The organization of matter in the compartment suggested conditions for controlled assembly of biological machines. This puts forth a man-made biological system with programmable information processing from the gene to a ‘cell’, and up to the ‘multicellular’ scale.


    References:

    A. Tayar, E. Karzbrun, V. Noireaux, R.H. Bar-Ziv, Propagating gene expression fronts in a one-dimensional coupled system of artificial cells. Nature Phys. 11, 1037–1041 (2015).
    E. Karzbrun, A. M. Tayar, V. Noireaux, R.H. Bar-Ziv, Programmable on-chip DNA compartments as artificial cells. Science. 345, 829–832 (2014).
    D. Bracha, E. Karzbrun, G. Shemer, P. A. Pincus, R.H. Bar-Ziv, Entropy-driven collective interactions in DNA brushes on a biochip. Proc. Natl. Acad. Sci. U. S. A. 110, 4534–8 (2013).
    Y. Heyman, A. Buxboim, S. G. Wolf, S. S. Daube, R.H. Bar-Ziv, Cell-free protein synthesis and assembly on a biochip. Nature Nanotech. 7, 374–378 (2012).









    Colloquia
  • Date:25ThursdayFebruary 2016

    LIfe Science Lecture

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    Time
    15:00 - 16:30
    Title
    Prof. Guy Shakhar
    Location
    Dolfi and Lola Ebner Auditorium
    LecturerProf. Guy Shakhar
    Department of Immunology
    Contact
    Lecture
  • Date:25ThursdayFebruary 2016

    Morphological Control Over Pyridine Based Metal Organic Frameworks

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    Time
    15:30 - 16:30
    Location
    Helen and Milton A. Kimmelman Building
    LecturerShira Hamami
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    Lecture
  • Date:28SundayFebruary 201629MondayFebruary 2016

    The 28th meeting of the Israeli mass spectrometry society - Joint with the British society

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    Time
    All day
    Location
    The David Lopatie Conference Centre
    Chairperson
    Michal Sharon
    Contact
    Conference
  • Date:28SundayFebruary 2016

    Deciphering Jupiter's internal flow using the Juno gravity measurements and an adjoint based dynamical model

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    Time
    11:00 - 11:00
    Location
    Sussman Family Building for Environmental Sciences
    LecturerDr. Eli Galanti
    Earth and Planetary Sciences Weizmann Institute of Science
    Organizer
    Department of Earth and Planetary Sciences
    Contact
    AbstractShow full text abstract about The nature of the large-scale flow below the cloud level on ...»
    The nature of the large-scale flow below the cloud level on Jupiter is still unknown. The observed surface wind might be confined to the upper layers, or be a manifestation of deep cylindrical flow. Moreover, it is possible that in the case where the observed wind is superficial, there exists deep flow that is completely separated from the surface. During the years 2016-17 Juno will both perform close flybys of Jupiter, obtaining a high precision gravity spectrum for the planet. This data can be used to estimate the depth of Jupiter observed cloud-level wind, and decipher a possible deep flow that is decoupled from the surface wind. In this talk I will discuss the Juno gravity experiment and the possible outcomes with regard to the flow on Jupiter.

    We explore the possibility of complex wind dynamics that include both the upper-layer wind, and a deep flow that is completely detached from the flow above it. The surface flow is based on the observed cloud-level flow and is set to decay with depth. The deep flow is constructed synthetically to produce cylindrical structures with variable width and magnitude, thus allowing for a wide range of possible setups of the unknown deep flow. The combined 3D flow is then related to the density anomalies via a dynamical model and the resulting density field is then used to calculate the gravitational moments. An adjoint inverse model is constructed for the dynamical model, thus allowing backward integration of the dynamical model, from the expected observations of the gravity moments to the parameters controlling the setup of the deep and surface flows.

    We show that the model can be used for examination of various scenarios, including cases in which the deep flow is dominating over the surface wind. The novelty of our adjoint based inversion approach is in the ability to identify complex dynamics including deep cylindrical flows that have no manifestation in the observed cloud-level wind. Furthermore, the flexibility of the adjoint method allows for a wide range of dynamical setups, so that when new observations and physical understanding will arise, these constraints could be easily implemented and used to better decipher Jupiter flow dynamics.
    Lecture
  • Date:28SundayFebruary 2016

    Expression homeostasis during DNA replication

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    Time
    13:00 - 13:00
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    LecturerRaz Bar-Ziv
    Naama Barkai's group, Dept. of Molecular Genetics,WIS
    Organizer
    Department of Molecular Genetics
    Contact
    Lecture
  • Date:28SundayFebruary 2016

    Diffusion-consumption kinetics and localization in cytokine communication between T cells

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    Time
    13:15 - 13:15
    Location
    Edna and K.B. Weissman Building of Physical Sciences
    LecturerProf. Oleg Krichevsky
    Ben Gurion University
    Organizer
    Clore Center for Biological Physics
    Contact
    AbstractShow full text abstract about Cells of the immune system cooperate their activity by secre...»
    Cells of the immune system cooperate their activity by secreting small proteins – cytokines.
    The cytokines binding to their receptors on a receiving cell causes a chain of signaling events that determine the fate of the cell: its survival, differentiation and proliferation. We argue that the competition between cytokine diffusion and
    its consumption by a receiving cell sets a characteristic length that defines the spatial extent of cytokine communication.
    On the example of interleukin-2 cytokine we demonstrate both in vitro and in vivo that the cytokine fields can be localized to the vicinity of the secreting cell, and we find that a simple diffusion/consumption mechanism provides an adequate explanation for such localization.
    Lecture
  • Date:28SundayFebruary 2016

    Super-resolution microscopy and the 3D distribution of proteins on cellular membranes

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    Time
    15:00 - 16:00
    Location
    Camelia Botnar Building
    LecturerProf. Gilad Haran
    Department of Chemical Physics
    Organizer
    Department of Life Sciences Core Facilities
    Contact
    Lecture
  • Date:29MondayFebruary 2016

    Schmidt Lecture - "Stimuli-Responsive Smart Soft Materials"

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    Time
    11:00 - 12:30
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. Takuzo Aida
    Department of Chemistry and Biotechnology School of Engineering, The University of Tokyo
    Organizer
    Faculty of Chemistry
    Contact
    AbstractShow full text abstract about Machine technology frequently puts magnetic or electrostati...»
    Machine technology frequently
    puts magnetic or electrostatic
    repulsive forces to practical use,
    as in maglev trains, vehicle
    suspensions or non-contact
    bearings. In contrast, materials
    design overwhelmingly focuses
    on attractive interactions, such
    as in the many advanced
    polymer-based composites, where inorganic fillers interact with a polymer matrix to improve
    mechanical properties. However, articular cartilage strikingly illustrates how electrostatic repulsion
    can be harnessed to achieve unparalleled functional efficiency: it permits virtually frictionless
    mechanical motion within joints, even under high compression. Here we describe a composite
    hydrogel with anisotropic mechanical properties dominated by electrostatic repulsion between
    negatively charged unilamellar titanate nanosheets embedded within it. Crucial to the behaviour of this
    hydrogel is the serendipitous discovery of cofacial nanosheet alignment in aqueous colloidal
    dispersions subjected to a strong magnetic field, which maximizes electrostatic repulsion6 and thereby
    induces a quasi-crystalline structural ordering over macroscopic length scales and with uniformly
    large face-to-face nanosheet separation. We fix this transiently induced structural order by
    transforming the dispersion into a hydrogel using light-triggered in situ vinyl polymerization. The
    resultant hydrogel, containing charged inorganic structures that align cofacially in a magnetic flux,
    deforms easily under shear forces applied parallel to the embedded nanosheets yet resists compressive
    forces applied orthogonally. We anticipate that the concept of embedding anisotropic repulsive
    electrostatics within a composite material, inspired by articular cartilage, will open up new
    possibilities for developing soft materials with unusual functions.
    Colloquia
  • Date:29MondayFebruary 2016

    The landscape of DNA methylation in cancer; therapeutic and diagnostic implications

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    Time
    14:00 - 14:00
    Title
    Cancer Research Club Seminar
    Location
    Raoul and Graziella de Picciotto Building for Scientific and Technical Support
    LecturerDr. Moshe Szyf
    Organizer
    Department of Immunology and Regenerative Biology
    Contact
    Lecture
  • Date:29MondayFebruary 2016

    Resilience of Multidimensional Complex Systems

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    Time
    14:15 - 14:15
    Location
    Dannie N. Heineman Laboratory
    LecturerBaruch Barzel
    Bar-Ilan University
    Organizer
    Department of Physics of Complex Systems
    Contact
    AbstractShow full text abstract about Resilience is a system's ability to cope with change, o...»
    Resilience is a system's ability to cope with change, or to bounce back after stress. The loss of resilience in a natural system occurs when the stress exceeds a certain threshold, beyond which the system loses its ability to bounce back and retain proper functionality. For instance, when the loss of trees in a forest (deforestation) crosses a tipping point and the forest turns barren, or when the load on the electrical power grid becomes too high and a massive power failure emerges. The challenge is that most complex systems are multidimensional, disordered and described by nonlinear dynamics - characteristics that firmly avoid analytical treatment. We address this challenge by showing how to map a complex system into an effective one dimensional equation, exposing the universal patterns of resilience exhibited by diverse systems, from ecological to technological networks. Along the way we will understand why systems lose resilience all of a sudden, learn how to predict such resilience loss and show how to fortify a system to become more resilient.


    J. Gao, B. Barzel, A-L Barabasi, Nature 530, 307 (2016).

    Lecture
  • Date:01TuesdayMarch 2016

    A brief history of DNA repair Tribute to the 2015 Chemistry Nobel Prize laureates

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    Time
    10:00 - 11:00
    Location
    Wolfson Building for Biological Research
    LecturerProf. Zvi Livneh
    Dept. of Biomolecular Sciences-WIS
    Organizer
    Department of Biomolecular Sciences
    Contact
    AbstractShow full text abstract about DNA damage is continuously formed at a staggering rate of ab...»
    DNA damage is continuously formed at a staggering rate of about 50,000 lesions/genome/day, which may cause severe malfunction during DNA replication and transcription. Therefore, life as we know it depends on DNA repair mechanisms, and germ-line mutations in DNA repair genes cause a broad spectrum of human disease including cancer, immunological deficiencies and neurodegenerative diseases. The 2015 Nobel Prize in Chemistry was awarded to Thomas Lindahl, Paul Modrich and Aziz Sancar, who made fundamental contributions to deciphering molecular mechanisms of DNA repair. A brief history of DNA repair will be presented, highlighting the contributions of the Nobel Prize laureates.
    Lecture
  • Date:01TuesdayMarch 2016

    “Recent LHC results”

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    Time
    11:00 - 11:00
    Location
    Edna and K.B. Weissman Building of Physical Sciences
    LecturerMaria Spiropulu
    Caletech
    Organizer
    Department of Particle Physics and Astrophysics
    Contact
    Lecture
  • Date:01TuesdayMarch 2016

    Methionine, a master metabolite in plant seeds?!

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    Time
    11:15 - 11:15
    Location
    Ullmann Building of Life Sciences
    LecturerDr. Hagai Cohen
    Prof. Asaph Aharoni’s Lab., Dept. of Plant & Environmental Sciences
    Organizer
    Department of Plant and Environmental Sciences
    Contact
    Lecture
  • Date:01TuesdayMarch 2016

    High Energy Density Materials at Sandia: Investigations in Planetary Science

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    Time
    11:15 - 11:15
    Location
    Edna and K.B. Weissman Building of Physical Sciences
    LecturerDawn Flicker
    Pulsed Power Sciences Center, Sandia National Laboratories
    Organizer
    Department of Particle Physics and Astrophysics
    Contact
    AbstractShow full text abstract about The structure and evolution of planets is determined by mate...»
    The structure and evolution of planets is determined by material behavior at high pressure. Such high pressures can only be achieved at High Energy Density (HED) facilities like Sandia’s Z machine and high-power laser facilities. Z stores 22MJ of energy that is released in pulses of up to 25MA peak current with 200-1000ns rise times. The large currents generate strong magnetic fields that can be used to create high pressures in dynamic material experiments. This capability enables evaluation of material equation-of-state and other properties in extreme conditions. I will present three examples using experimental results from the Z machine to answer long-standing questions in planetary science. First, solar system evolution models have been unable to consistently account for observations of Jupiter and Saturn. Recent Z observations of a first-order liquid-liquid insulator to metal transition in hydrogen may shed light on this discrepancy. Second, measurements of iron vaporization may address troubling differences between models of the Earth’s moon forming event and observations of the Earth and moon’s compositions. Finally, precise measurements of high-pressure water were used to validate DFT models which in turn informed planetary structure models suggesting an explanation of the multi-polar magnetic fields of Neptune and Uranus.
    The Z Fundamental Science Program (ZFSP), which enables the academic community to take advantage of the facility enabling much of this work, will be described.
    Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-AC04-94AL85000.
    Lecture
  • Date:01TuesdayMarch 2016

    Sex differences in neuropsychological disorders: Why should we care?

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    Time
    12:30 - 12:30
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. Anat Biegon
    Director, Center on Gender, Hormones and Health Stony Brook University School of Medicine, NY
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Gender differences affect the prevalence, presentation, trea...»
    Gender differences affect the prevalence, presentation, treatment response and outcome of many neuropsychiatric disorders; including Alzheimer's disease, multiple sclerosis, depression and anxiety. However, despite a female majority among sufferers of these disorders, women were historically excluded from clinical trials; and the overwhelming majority preclinical studies on disease mechanisms and new drug development are conducted exclusively on males. Consequently, women are 50% more likely than men to experience adverse drug reactions, and between 1997 and 2001, 80% of the drugs removed from the market were specifically implicated in adverse side effects or deaths of female patients.
    Drawing on examples from diverse neuropathologies, the talk will describe the current status and the future potential of research and education on gender based medicine; aiming to level the field and gain insight into the influence of sex an gonadal hormones on CNS physiology and pathology.
    Lecture
  • Date:01TuesdayMarch 2016

    Probing the atomic Higgs force and beyond

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    Time
    13:15 - 13:15
    Location
    Edna and K.B. Weissman Building of Physical Sciences
    LecturerProf. Roee Ozeri, Prof. Gilad Perez
    Weizmann Institute
    Organizer
    Department of Particle Physics and Astrophysics
    Contact
    Lecture
  • Date:02WednesdayMarch 2016

    Pelletron Series - by invitation

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    Time
    All day
    Contact
    Lecture
  • Date:02WednesdayMarch 2016

    G-INCPM-Special Seminar - Irit Paz, Ph.D, GLocal Sales Manager, Takara Bio Europe SAS - SMARTer® Solutions for Next-Gen Sequencing

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    Time
    10:00 - 11:30
    Location
    Nancy and Stephen Grand Israel National Center for Personalized Medicine
    LecturerIrit Paz, Ph.D
    GLocal Sales Manager, Takara Bio Europe SAS
    Organizer
    Department of Biomolecular Sciences
    Contact
    AbstractShow full text abstract about Next-generation sequencing (NGS) has increased our understan...»
    Next-generation sequencing (NGS) has increased our understanding of biological phenomena and human disease by enabling highly sensitive transcriptome analysis across a large dynamic range of RNA expression levels. As exciting new applications for NGS emerge, Clontech continues to develop powerful new tools for life science research by improving and building upon its core technologies. A common feature of Clontech® NGS kits is SMART® technology, which harnesses the template-switching activity of customized reverse transcriptases to enable researchers to analyze their most challenging samples, such as ultra-low input or single-cell RNA, noncoding RNA, and RNA from degraded samples. In particular, single-cell RNA-seq is one of the fastest-growing applications of NGS, and the SMARTer Ultra® Low mRNA-seq family of products, featuring a highly sensitive, dT-primed mechanism, has become the gold standard for this type of analysis. The newest generations of ultra-low input/single-cell mRNA-seq and picogram-input total RNA-seq kits have brought increased sensitivity to SMART technology by improving upon the SMART-Seq® method and incorporating locked nucleic acid (LNA) technology. Expanding applications for SMART technology have led to a ligation-free method for generating ChIP (chromatin immunoprecipitation) sequencing libraries. This seminar will take you on a tour of these new technologies and highlight ongoing research on a variety of NGS applications, including single-cell RNA-seq.

    Lecture
  • Date:02WednesdayMarch 2016

    Creating, Controlling, and Diagnosing High Energy Density Matter with the National Ignition Facility

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    Time
    11:00 - 12:00
    Location
    Edna and K.B. Weissman Building of Physical Sciences
    LecturerMark Herrmann
    National Ignition Facility Director, Lawrence Livermore National Laboratory
    Organizer
    Faculty of Physics
    Contact
    AbstractShow full text abstract about The National Ignition Facility (NIF), at Lawrence Livermore ...»
    The National Ignition Facility (NIF), at Lawrence Livermore National Laboratory, is the world’s most energetic laser and it has been in routine operation since 2009. NIF consists of 192 beams that can deliver over 1.8 MJ of ultraviolet energy in a few nanoseconds. These beams deliver >400 TW of power to targets much smaller than a cm3. The deposition of this energy in a small volume creates extreme radiation environments and large pressures in materials. These very large pressures and radiation environments can be used to create matter at high energy densities (usually defined by an energy density exceeding about 0.1 MJ/cm3 or pres-sures greater than 106 times atmospheric pressure). NIF is used to perform state of the art ex-periments in the field of high energy density science, enabling us to address many fundamen-tal questions on the behavior of matter at high pressures. Particular areas of focus include the study of materials that make up planetary interiors and exploring astrophysics related phe-nomena in the laboratory. A primary goal of the NIF is to obtain thermonuclear fusion ignition in the laboratory by using x-rays to compress fusion fuel to extreme conditions. In this talk, I will provide an overview of the National Ignition Facility and some of the amazing technology that enables it. I will discuss recent progress in high energy density science and inertial con-finement fusion, and talk about the challenges and opportunities for future research.
    Colloquia

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