Pages
April 25, 2016
-
Date:20MondayMay 2024Colloquia
Designing nanoparticles for biological environments: from quantum sensing to gene medicine
More information Time 11:00 - 12:15Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Petr Cigler
Institute of Organic Chemistry and Biochemistry, Czech Academy of SciencesOrganizer Department of Chemical and Biological PhysicsHomepage Contact Abstract Show full text abstract about The use of nanoparticles in diagnostics, therapeutics and im...» The use of nanoparticles in diagnostics, therapeutics and imaging has revolutionized these fields with new properties not available with small molecules. Nanoparticle interface provide possibilities for polyvalent and independent attachment of different molecules serving as recognition/targeting structures, optical probes, spin probes or catalysts. However, nanoparticles operating in biological environments require precise control of multiple factors related to surface chemistry and their composition. To avoid for example aggregation, off-target interactions, and protein corona formation, appropriate interface design is essential. This talk will present general nanoparticle design strategies and specific examples including nanodiamonds and lipid nanoparticles. -
Date:20MondayMay 2024Lecture
Foundations of Computer Science Seminar
More information Time 11:15 - 12:15Title Online Edge ColoringLocation Jacob Ziskind BuildingLecturer David Wajc
TechnionOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about Vizing’s Theorem provides an algorithm that edge colors any ...» Vizing’s Theorem provides an algorithm that edge colors any graph of maximum degree Δ using Δ 1 colors, which is necessary for some graphs, and at most one higher than necessary for any graph. In online settings, the trivial greedy algorithm requires 2Δ-1 colors, and Bar-Noy, Motwani and Naor in the early 90s showed that this is best possible, at least in the low-degree regime. In contrast, they conjectured that for graphs of superlogarithmic-in-n maximum degree, much better can be done, and that even (1 o(1))Δ colors suffice online. This would make edge coloring a rare problem, for which "online is (nearly) as easy as offline". In this talk I will outline the history of this conjecture, and its recent resolution, together with extensions of a flavor resembling classic and recent results on *list* edge-coloring and “local” edge-coloring.
Talk based in part on joint works with many wonderful and colorful collaborators, including Sayan Bhattacharya, Joakim Blikstad, Ilan R. Cohen, Fabrizio Grandoni, Seffi Naor, Binghui Peng, Amin Saberi, Aravind Srinivasan, Ola Svensson and Radu Vintan.
-
Date:21TuesdayMay 2024Lecture
Molecular-level insights into light-induced reactions in biological systems from multiscale simulations
More information Time 14:00 - 15:00Location Gerhard M.J. Schmidt Lecture HallLecturer Dr. Igor Shapiro
Hebrew UniversityOrganizer Department of Chemical and Structural BiologyContact -
Date:22WednesdayMay 2024Lecture
LS Luncheon
More information Time 12:00 - 14:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Prof. Neta Regev Rudzki Contact -
Date:22WednesdayMay 2024Lecture
Spotlight on Science
More information Time 13:00 - 14:00Title Structure-function relationship as a key to deciphering neural codeLocation Gerhard M.J. Schmidt Lecture HallLecturer Dr. Alon Rubin
Dr.Organizer Science for All UnitContact -
Date:23ThursdayMay 2024Lecture
Geometric Functional Analysis and Probability Seminar
More information Time 11:00 - 12:00Title Metric functional boundaries of groupsLocation Jacob Ziskind BuildingLecturer Ariel Yadin
BGUOrganizer Department of MathematicsContact Abstract Show full text abstract about Based on works of Busemann and Gromov, Anders Karlsson has p...» Based on works of Busemann and Gromov, Anders Karlsson has proposed a theory of “metric functionals” on a general metric space, as a replacement for linear functionals when there is no linear structure. for discrete spaces, these identify with “horofunctions”. We will discuss some aspects of these objects for “well suited” metrics on discrete groups. We are mainly interested in the interaction between the geometry and the algebraic properties of the group. for example, it seems that metric functionals can be useful in studying the structure of “small” groups, and understanding the existence of (virtual) characters. I am not assuming familiarity with any of the above notions, and plan to properly define everything presented in the talk. This is based on joint works with Liran Ron-George.
-
Date:23ThursdayMay 2024Colloquia
Physics Colloquium
More information Time 11:15 - 12:30Title Quantum Dot Physics Using Atomic Defects in Ultrathin Tunnel BarriersLocation Edna and K.B. Weissman Building of Physical SciencesLecturer Prof. Hadar Steinberg
Hebrew UniversityOrganizer Department of Condensed Matter PhysicsContact Abstract Show full text abstract about Quantum dots (QDs) are conducting regions which can localize...» Quantum dots (QDs) are conducting regions which can localize few charge carriers, and where the energy spectrum is dominated by Coulomb repulsion. QDs can be as large as few hundreds of nanometers, or as small as a single molecule, their sizes depending on their physical realization – whether in two-dimensional materials, nanowires, molecular systems.
In my talk I will describe our work on a new type of an atomically-sized QD, realized in defects residing in ultrathin two-dimensional insulators. These defect-dots are found in layered materials such as hexagonal Boron Nitride (hBN), which we study by their assembly into stacked devices. By using graphene electrodes, we are able to electronically couple to the QD, while allowing the QD energy to be externally tuned exploiting the penetration of electric field through graphene.
A consequence of the structure of our devices is that the defect QDs are placed at atomic distance to the conductors on both sides. I will show how the presence of such energy-tunable, atomically sized QDs at nanometer proximity to other conducting systems opens new opportunities for sensitive measurements, including use of QDs as highly sensitive spectrometers [1], or as single electron transistors, unique in their sensitivity to local electric fields at the nanometer scale [2]. I will discuss our future prospects of using defect QDs as quantum sensors.
References
1. Devidas, T.R., I. Keren, and H. Steinberg, Spectroscopy of NbSe2 Using Energy-Tunable Defect-Embedded Quantum Dots. Nano Letters, 2021. 21(16): p. 6931-6937.
2. Keren, I., et al., Quantum-dot assisted spectroscopy of degeneracy-lifted Landau levels in graphene. Nature Communications, 2020. 11(1): p. 3408.
-
Date:23ThursdayMay 2024Lecture
Vision and AI
More information Time 12:15 - 13:15Title 3D Motion Synthesis and ControlLocation Jacob Ziskind BuildingLecturer Sigal Raab
TAUOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about Human motion is a fundamental attribute, underlying human ac...» Human motion is a fundamental attribute, underlying human actions, gestures, and behavior. Research of human motion has a wide range of applications, from medical simulations, through security, to entertainment. While the domain of deep learning for RGB image analysis has received huge attention, the domain of motion manipulation using DNNs, and more recently diffusion models, is in its infancy, and holds many scientific opportunities yet to be discovered.
Moreover, motion is challenging due to its irregular structure, diverse angles, and the expense and complexity of obtaining high-quality data. My research focuses on generative tasks such as motion synthesis and motion editing using deep neural networks. In the upcoming talk, I will discuss the building blocks used for motion synthesis and elaborate on various works that utilize diffusion models for synthesis and editing tasks. Each work addresses different aspects of the motion domain and involves various controls and tasks.
-
Date:23ThursdayMay 2024Lecture
A guest lecture by Prof. Sarab Abu-Rabia Queder
More information Time 13:00 - 14:15Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Sarab Abu-Rabia Queder Contact -
Date:23ThursdayMay 2024Academic Events
Scientific Council Meeting
More information Time 14:00 - 14:00Location The David Lopatie Conference CentreContact -
Date:26SundayMay 2024Lecture
The Clore Center for Biological Physics
More information Time 13:15 - 14:30Title Phages vs bacteria warfare: co-evolution and intelligence gatheringLocation Koffler Accelerator of the Canada Center of Nuclear PhysicsLecturer Prof. Yigal Meir
Ben-Gurion UniversityOrganizer Clore Center for Biological PhysicsContact Abstract Show full text abstract about The warfare between bacteria and phages - viruses that infec...» The warfare between bacteria and phages - viruses that infect bacteria - has been raging for billions of years. During this time both sides have evolved various attack and defense systems. In this talk I will describe 3 related projects: 1. Is there an optimal number of such defense or anti-defense systems? 2. How can different phages which prey on the same bacteria co-exist, in contradiction with the expected competitive exclusion? 3. Some phages have developed the ability to garner environmental information, enabling them to make more "intelligent" decisions. How much is such intelligence worth, in terms of other resources?
FOR THE LATEST UPDATES AND CONTENT ON SOFT MATTER AND BIOLOGICAL PHYSICS AT THE WEIZMANN, VISIT OUR WEBSITE: https://www.biosoftweizmann.com/
-
Date:27MondayMay 2024Lecture
Towards quantitative biology of developmental abnormalities
More information Time 13:00 - 14:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. Stanislav Shvartsman
Dept of Molecular Biology Princeton UniversityContact Abstract Show full text abstract about Developmental disorders are severely understudied, in spite ...» Developmental disorders are severely understudied, in spite of their alarmingly high incidence, with 1 in 6 U.S. children having one or more disabilities or developmental delays. The main challenge is the design of statistically powered studies that can disentangle numerous genetic and environmental factors. We have been working towards addressing this challenge for the developmental abnormalities associated with the germline mutations within the ERK cascade. Focusing on mutations that affect MEK, a kinase that activates ERK, we demonstrated how studies of human mutations in Drosophila can answer the long-standing questions in the field. Specifically, we established how pathogenic mutations affect an isolated MEK protein, demonstrated how they disrupt the normal process of MEK activation in the cell, and quantified their effects on ERK signaling in embryos. More recently, our work shed light on the origins of phenotypic variability in the ERK-associated developmental disorders, demonstrating that they can be of purely stochastic origin. Given the generality of our approach, it should be applicable to other developmental abnormalities associated with genetically deregulated cell signaling. -
Date:28TuesdayMay 2024Lecture
Specificity and promiscuity of JAK recruitment regulates pleiotropy of cytokine-receptor signaling
More information Time 09:15 - 10:15Location Nella and Leon Benoziyo Building for Biological SciencesOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Promiscuous binding of Janus kinases (JAKs) to class I/II cy...» Promiscuous binding of Janus kinases (JAKs) to class I/II cytokine receptors has been
reported, yet its role in signaling is unclear. To systematically explore JAK pairing in type
I interferon (IFN-I) signaling, we generated an artificial IFN-I receptor (AIR) by replacing
the extracellular domains of IFNAR1 and IFNAR2 with anti-mEGFP and mCherry
nanobodies. The heterodimeric AIR restored near-native IFN-I activity, while the
homomeric variant of IFNAR2 (AIR-dR2) initiated much weaker signaling despite
harboring docking sites for STAT proteins. To further investigate the roles of JAKs on the
receptors, knockout (KO) JAK1, JAK2, TYK2, and JAK2/TYK2 were generated. JAK1
KO led to a complete loss of IFN-I signaling, partially restored by TYK2 overexpression.
TYK2 KO cells retained partial activity, which was elevated by JAK1 overexpression,
suggesting both JAKs partially substitute each other.
Conversely, JAK2 KO only moderately impacted the biological activity of IFN-Is, even in
JAK2/TYK2 KO cells. Live cell micropatterning confirmed promiscuous binding of JAK1,
JAK2, and TYK2 to IFNAR1 and IFNAR2. Moreover, the identities of recruitment of
different JAKs on the ICDs were related to their respective concentrations in the cell, which
varies between cell lines. Yet, the efficiency of JAK cross-phosphorylation and
downstream signaling also depend on their identity. Promiscuity of JAK binding was also
observed for IFNL1, IL-10-Rbβ, TPOR, and GHR but not for EPOR, accompanied by
different downstream signaling activities. The competitive binding of JAKs to cytokine
receptors and the highly diverse absolute and relative JAK expression levels in different
cell types can account for cell type-dependent signaling pleiotropy observed for cytokine
receptors.
-
Date:28TuesdayMay 2024Lecture
Vasosdynamics of cortical arterioles and what it informs us about neuronal activity
More information Time 12:30 - 13:15Location Gerhard M.J. Schmidt Lecture HallOrganizer Department of Brain SciencesContact -
Date:28TuesdayMay 2024Lecture
Student Seminar
More information Time 12:30 - 13:30Location Max and Lillian Candiotty BuildingOrganizer Department of Immunology and Regenerative BiologyContact -
Date:28TuesdayMay 2024Lecture
How to Enhance Sex Determination?
More information Time 14:00 - 15:00Location Gerhard M.J. Schmidt Lecture HallLecturer Dr. Nitzan Gonen
The Mina and Everard Goodman Faculty of Life Sciences Institute of Nanotechnology and Advanced Materials, Bar-Ilan UniversityOrganizer Department of Chemical and Structural BiologyContact -
Date:29WednesdayMay 2024Lecture
Phd Defense Seminar- Hagar Fox
More information Time 09:30 - 09:30Title Unravelling key genes involved in carbohydrate regulation and dynamics in trees, and the link to tree performance under drought stressLocation Nella and Leon Benoziyo Building for Biological SciencesOrganizer Department of Plant and Environmental SciencesContact -
Date:29WednesdayMay 2024Lecture
Machine Learning and Statistics Seminar
More information Time 11:15 - 12:15Title First-Order Methods for Sparse OptimizationLocation Jacob Ziskind BuildingLecturer Nadav Hallak
TechnionOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about Sparse solutions play a crucial role in various fields due t...» Sparse solutions play a crucial role in various fields due to their compact representation, interpretability, robustness, and better generalization. This talk focuses on first-order methods for composite problems with an explicit sparsity expression, and the connection between the optimality conditions they achieve. I will show that the proximal-gradient operation can be implemented efficiently for classes of composite problems in spite of the sparsity element, and will present component-wise methods that achieve better solutions compared to the proximal-gradient. Finally, a conditional gradient based method that balances between the advantages and disadvantages of the proximal-gradient and the component-wise methods will be presented.
-
Date:29WednesdayMay 2024Lecture
Measuring conformational equilibria in allosteric proteins with time-resolved tmFRET
More information Time 14:00 - 15:00Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Sharona Gordon
Professor of Physiology & Biophysics, University of Washington School of MedicineOrganizer Department of Chemical and Structural BiologyContact -
Date:30ThursdayMay 2024Lecture
Vision and AI
More information Time 12:15 - 13:15Title Editing methods for Text-to-Image ModelsLocation Jacob Ziskind BuildingLecturer Hadas Orgad
TechnionOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about Text-to-image generative diffusion models are trained on hug...» Text-to-image generative diffusion models are trained on huge amounts of web-scraped image-caption pairs. As a result, these models encode real-world information and correlations, such as the identity of the President of the United States, or the color of the sky. While this knowledge can be useful, and allows easy and efficient generation of beautiful images from simple prompts, it may also be outdated, reflect assumptions and biases (e.g., doctors are always white male), or violate copyrights (as was demonstrated in recent lawsuits for models imitating artistic styles). However, model providers and creators currently have no efficient means to update models without either retraining them---which is costly in computation and time, and might also require data curation---or requiring explicit prompt engineering from the end user. In this talk, we will discuss three of our recent papers, which aim to offer a fast and practical way to control model behavior post-training. We modify a small, targeted part of the model that is responsible for encoding a certain part in the computation process of the deep network. This is done without training, by editing the model weights using a closed-form solution. The different papers target different parts of the model, as well as various types of information encoded in it: implicit assumptions, factual associations, artistic style, social biases, and harmful content. We will also discuss some of the interpretability aspects and insights that can be gained from these editing methods. Overall, the methods presented in the talk offer a fast and practical means for safe deployment of text-to-image models.
