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April 27, 2017

  • Date:23TuesdayJanuary 2018

    Functions and regulation of 3D genome organisation in development and disease

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    Time
    10:00 - 11:00
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    LecturerProf. Francois Spitz
    (Epi)Genomics of Animal Development Unit Department of Developmental and Stem Cell Biology Institut Pasteur Paris (France)
    Organizer
    Azrieli Institute for Systems Biology
    Contact
    AbstractShow full text abstract about The complex hierarchy of three-dimensional patterns that cha...»
    The complex hierarchy of three-dimensional patterns that characterize the 3D folding of mammalian chromosomes appears as an important element in controlling gene expression. At the megabase scale, chromosomes are partitioned into domains that define two main compartments, corresponding to transcriptionally active and inactive regions, respectively. Each compartment domain is itself composed of distinct domains characterized by increased self-interactions called topological domains (TADs). Recent high-resolution Hi-C approaches revealed a finer-scale organisation of the genome in smaller “contact domains”, often associated with loops linking specific points. At these different scales, the spatial organisation of the genome shows tight correlation with its chromatin structure and its transcriptional activity. However, while steady progress is being made in describing the 3D folding of the genome at increased resolution, the mechanisms that determine this folding, its dynamic properties and the functional implications of these emerging features are still poorly understood.
    We use advanced genome tagging and engineering strategies, as well as targeted inactivation of factors involved in chromosomal folding to unravel the elements and mechanisms that drive the folding of large loci in specific yet dynamic conformations and their influence on gene expression. Our recent results show that the complex patterns of vertebrate HiC maps result from the superimposition of two distinct mechanisms: 1) a cohesin-independent mechanism which brings together regions of similar chromatin states 2) a cohesin-dependent folding that associate different small compartments into TADs. Within TADS, we show as well that enhancers are not acting in a homogeneous manner, but that their influence is distributed in complex patterns, partially guided by the underlying structure. I will discuss the different implications of these findings for our views of genome organisation.
    Lecture
  • Date:23TuesdayJanuary 2018

    A deep 3D view into cells using cryo-scanning transmission electron tomography

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    Time
    10:00 - 11:00
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerDr. Shron G. Wolf
    Department of Chemical Research Support- WIS
    Organizer
    Department of Biomolecular Sciences
    Contact
    AbstractShow full text abstract about CryoSTEM tomography (CSTET) is a novel combination [1-5] of ...»
    CryoSTEM tomography (CSTET) is a novel combination [1-5] of two well-established techniques: cryo-electron tomography (CET) and scanning transmission electron microscopy (STEM). Cryogenic fixation allows for the most faithful preservation of biological macromolecules, tissues and cells. By preserving the cryogenic temperature and maintaining a contamination-free environment inside the electron microscope, CET for such cryo-preserved specimens have resulted in major advances in their characterization [6]. However, due to technical constraints, sample thickness amenable to viewing by CET is limited (up to ~400 nm).
    STEM provides a possibility for relieving these limitations because contrast and signal are produced incoherently. The natural limit for sample thickness is extended three-fold for CSTET, meaning that whole vitrified mammalian cells can be imaged at ~3-4 nm resolution for regions up to ~1 μm in thickness. For spreading cells, many inter- organelle contacts and morphologies can be studied. In addition, CSTET combined with Energy Dispersive X-ray Spectroscopy (EDX) allows for on-the-spot chemical characterization of cell contents.
    References
    1. Wolf, S.G., L. Houben, and M. Elbaum, Cryo-scanning transmission electron tomography of vitrified cells. Nature Methods, 2014. 11(4): p. 423-428.
    2. Wolf, S.G., P. Rez, and M. Elbaum, Phosphorus detection in vitrified bacteria by cryo- STEM annular dark-field analysis. J Microsc, 2015. 260(2): p. 227-33.
    3. Elbaum, M., S.G. Wolf, and L. Houben, Cryo-scanning transmission electron tomography of biological cells. MRS Bulletin, 2016. 41(07): p. 542-548.
    4. Wolf, S.G., E. Shimoni, M. Elbaum, and L. Houben, STEM Tomography in Biology, in Cellular Imaging, Electron Tomography and Related Techniques, E.G. Hanssen, Editor. 2017, Springer, in press.
    5. Wolf, S.G., Y. Mutsafi, T. Dadosh, T. Ilani, Z. Lansky, B. Horowitz, S. Rubin, M. Elbaum, and D. Fass, 3D visualization of mitochondrial solid-phase calcium stores in whole cells. Elife, 2017. 6: e29929.
    6. Beck, M. and W. Baumeister, Cryo-Electron Tomography: Can it Reveal the Molecular Sociology of Cells in Atomic Detail? Trends Cell Biol, 2016. 26(11): p. 825-837.
    Lecture
  • Date:23TuesdayJanuary 2018

    Students Seminar

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    Time
    11:15 - 12:30
    Location
    Wolfson Building for Biological Research
    LecturerProf. Uri Alon's lab
    Organizer
    Department of Molecular Cell Biology
    Contact
    Lecture
  • Date:23TuesdayJanuary 2018

    Photorespiration is an adaptive response of plants to oxidative stress

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    Time
    11:30 - 11:30
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerProf. Agepati S. Raghavendra
    FNA, FASc, FTWAS, JC Bose National Fellow, School of Life Sciences, Dept. of Plant Sciences, University of Hyderabad, Hyderabad, India
    Organizer
    Department of Plant and Environmental Sciences
    Contact
    Lecture
  • Date:23TuesdayJanuary 2018

    Pay attention and learn from experience!: The transcriptional representation of experience and the role of the claustrum in attention

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    Time
    12:30 - 12:30
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerDr. Ami Citri
    ELSC, The Hebrew University of Jerusalem
    Organizer
    Department of Brain Sciences
    Contact
    Lecture
  • Date:24WednesdayJanuary 2018

    Developmental Club Series 2017-2018

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    Time
    10:00 - 10:00
    Title
    How a key interface between the brain’s neuro-hormonal and vascular systems is assembled
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    LecturerProf. Gil Levkowitz
    Weizmann Institute of Science
    Organizer
    Department of Molecular Genetics
    Contact
    Lecture
  • Date:24WednesdayJanuary 2018

    Laser induced homogeneous and oriented ice nucleation probed by ultrafast X-ray pulses

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    Time
    11:00 - 12:00
    Location
    Perlman Chemical Sciences Building
    LecturerDr. Iftach Nevo
    Dept. Materials and Interfaces, WIS
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Illumination of supercooled microliter water drops on a hydr...»
    Illumination of supercooled microliter water drops on a hydrophobic glass slide with pulsed ns-laser beams induces ice nucleation. The type of the ice nucleation, heterogeneous or homogeneous is determined by the illumination configuration. When analyzing the enhancement of the X-ray diffraction peaks from frozen drops and the first appearance of diffraction peak from the growing nuclei in a liquid drop by X-ray pulse after each laser pulse, a correlation to the polarization state is seen. This points toward the mechanism where the electric field defines preferred direction for water molecules to bind via the interaction between laser-induced dipoles. Furthermore, the latter observations also reveal particle ice attachment during growth. Finally, different illumination configurations yield freezing temperatures that can be higher by about 10 °C than from non-irradiated water drops.
    Lecture
  • Date:25ThursdayJanuary 2018

    Complexity-Theoretic Foundations of Quantum Supremacy Experiments

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    Time
    11:15 - 12:30
    Location
    Edna and K.B. Weissman Building of Physical Sciences
    LecturerScott Aaronson
    UT Austin
    Organizer
    Faculty of Physics
    Contact
    AbstractShow full text abstract about In the near future, there will likely be special-purpose qua...»
    In the near future, there will likely be special-purpose quantum computers with 50 or so high-quality qubits and controllable nearest-neighbor couplings. In this talk, I'll discuss general theoretical foundations for how to use such devices to demonstrate "quantum supremacy": that is, a clear quantum speedup for *some* task, motivated by the goal of overturning the Extended Church-Turing Thesis (which says that all physical systems can be efficiently simulated by classical computers) as confidently as possible.

    Based on joint work with Lijie Chen, https://arxiv.org/abs/1612.05903

    Colloquia
  • Date:25ThursdayJanuary 2018

    Optogenetic fMRI and the Investigation of Global Brain Circuit Mechanisms

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    Time
    14:00 - 14:00
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerJin Hyung Lee, PhD
    Associate Professor of Neurology and Neurological Sciences, Bioengineering, Neurosurgery, and Electrical Engineering (Courtesy) Stanford University
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Understanding the functional communication across brain has ...»
    Understanding the functional communication across brain has been a long sought-after goal of neuroscientists. However, due to the widespread and highly interconnected nature of brain circuits, the dynamic relationship between neuronal network elements remains elusive. With the development of optogenetic functional magnetic resonance imaging (ofMRI), it is now possible to observe whole-brain level network activity that results from modulating with millisecond- timescale resolution the activity of genetically, spatially, and topologically defined cell populations. ofMRI uniquely enables mapping global patterns of brain activity that result from the selective and precise control of neuronal populations. Advances in the molecular toolbox of optogenetics, as well as improvements in imaging technology, will bring ofMRI closer to its full potential. In particular, the integration of ultra-fast data acquisition, high SNR, and combinatorial optogenetics will enable powerful systems that can modulate and visualize brain activity in real-time. ofMRI is anticipated to play an important role in the dissection and control of network-level brain circuit function and dysfunction. In this talk, the ofMRI technology will be introduced with advanced approaches to bring it to its full potential, ending with examples of dissecting whole brain circuits associated with neurological diseases utilizing ofMRI.

    Short Bio:
    Dr. Lee received her Bachelor’s degree from Seoul National University and Masters and Doctoral degree from Stanford University, all in Electrical Engineering. She is a recipient of the 2008 NIH/NIBIB K99/R00 Pathway to Independence Award, 2010 NIH Director’s New Innovator Award, 2010 Okawa Foundation Research Grant Award, 2011 NSF CAREER Award, 2012 Alfred P. Sloan Research Fellowship, 2012 Epilepsy Therapy Project award, 2013 Alzheimer’s Association New Investigator Award, 2014 IEEE EMBS BRAIN young investigator award, and the 2017 NIH/NIMH BRAIN grant award. As an Electrical Engineer by training with Neuroscience research interest, her goal is to analyze, debug, and engineer the brain circuit through innovative technology.

    1. Hyun Joo Lee†, Andrew Weitz†, David Bernal-Casas, Ben A. Duffy, Mankin Choy, Alexxai Kravitz, Anatol Kreitzer, Jin Hyung Lee*, Activation of direct and indirect pathway medium spiny neurons drives distinct brain-wide responses, Neuron, 2016;91(2):412-424.

    2. Jia Liu†, Ben A. Duffy†, David Bernal-Casas, Zhongnan Fang, Jin Hyung Lee*, Comparison of fMRI analysis methods for heterogeneous BOLD responses in block design studies, Neuroimage, 2017;147:390-408.

    3. David Bernal-Casas, Hyun Joo Lee, Andrew Weitz, Jin Hyung Lee*, Studying brain circuit function with dynamic causal modeling for optogenetic fMRI, Neuron, 2017;93:522-532.
    Lecture
  • Date:25ThursdayJanuary 2018

    The Israel Camerata Jerusalem

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    Time
    20:00 - 20:00
    Title
    Lalo, Saint-Saens and Haydn
    Location
    Michael Sela Auditorium
    Contact
    Cultural Events
  • Date:27SaturdayJanuary 2018

    Maestro ALEXANDER VASILIEV - Fashion historian

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    Time
    19:00 - 19:00
    Title
    "secrets of Fashionable House"
    Location
    Michael Sela Auditorium
    Contact
    Cultural Events
  • Date:28SundayJanuary 2018

    A Martian Origin for the Mars Trojan Asteroids

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    Time
    11:00 - 11:00
    Location
    Sussman Family Building for Environmental Sciences
    LecturerDr. David Polishook
    Department of Earth and Planetary Sciences
    Organizer
    Department of Earth and Planetary Sciences
    Contact
    Lecture
  • Date:28SundayJanuary 2018

    Personalized Nanomedicines: Principles for using nanotechnology in cancer research

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    Time
    11:00 - 12:00
    Location
    Perlman Chemical Sciences Building
    LecturerProf. Avi Schroeder
    Dept. Chemical Engineering, Technion
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Medicine is taking its first steps towards patient-specifi...»

    Medicine is taking its first steps towards patient-specific care. Nanoparticles have many potential benefits for treating cancer, including the ability to transport complex molecular cargoes including siRNA and protein, as well as targeting to specific cell populations.
    The talk will address principles for engineering drug-loaded nanoparticles that can be remotely triggered to release their payload in disease sites. The evolution of such nanoparticles into programmed nano robots, unique particles that have an internal capacity to synthesize protein drugs, and their promise for treating cancer, will be discussed.
    Our research is aimed at tailoring treatments to address each person’s individualized needs and unique disease presentation. Specifically, we developed barcoded nanoparticles that target sites of cancer where they perform a programmed therapeutic task. These systems utilize molecular-machines to improve efficacy and reduce side effects.
    Lecture
  • Date:28SundayJanuary 2018

    Molecular Genetics Departmental Seminars 2017-2018

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    Time
    13:00 - 13:00
    Title
    "Metabolic enzyme coupling of Malate Dehydrogenases is enabled by piggybacking to peroxisomes".
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    LecturerShiran Maskit
    Organizer
    Department of Molecular Genetics
    Contact
    Lecture
  • Date:28SundayJanuary 2018

    Design and characterization of light-gated proteins for the investigation of medial prefrontal cortex function

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    Time
    14:30 - 14:30
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerMathias Mahn (PhD Defense Thesis)
    Ofer Yizhar Lab, Dept of Neurobiology, WIS
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Reversible modulation of neuronal activity is a powerful app...»
    Reversible modulation of neuronal activity is a powerful approach for isolating the roles of specific neuronal populations in circuit dynamics and behavior. Optogenetics enables such experiments, through excitation and inhibition of defined cells within neural circuits. However, in contrast to optogenetic excitation, for which a limited number of optogenetic tools can serve to all but a few experimental needs, tools used for inhibition of neuronal activity still impose stringent constraints on the experimental paradigm. During the seminar I will present data showing that the optimal approach for optogenetic silencing differs between subcellular neuronal compartments, characterize current tools for axonal inhibition and introduce a set of soma-targeted naturally-occurring anion-conducting channelrhodopsins as the potential next generation of inhibitory optogenetic tools for somatodendritic silencing approaches in neuroscience.
    Lecture
  • Date:29MondayJanuary 2018

    Ultimate Dark Matter detector

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    Time
    10:00 - 10:00
    Location
    Edna and K.B. Weissman Building of Physical Sciences
    LecturerAndrzej K. Drukier
    OKC, University of Stockholm
    Organizer
    Department of Particle Physics and Astrophysics
    Contact
    AbstractShow full text abstract about We disclose an implementation of RT-bolometers which compris...»
    We disclose an implementation of RT-bolometers which comprise high chemical-energy materials, e.g. explosive or catalase, H2O2}-system, that can be operated at temperature between 4oC and room temperature (RT). Energy deposited by the incident weakly interacting particle to the nuclei can trigger a local release of chemical energy;. The energy release in such a `nano-explosion’ indicates that a coherent scattering event has taken place and allows for the localization of this event;
    For DM detection {catalase, H2O2}-system is preferred, and there are many catalases, which have maximum activity at temperatures from about 10oC to about 90oC. This permits to optimize enzymatic reactions and influences the read-out design. {catalase, H2O2}-system works because the range of recoiling nuclei is so short that most of the energy is transferred in a single “voxel” called “vertex”, leading to a large local temperature increase.
    When neutrino or WIMPs scatter on nuclei, the majority of the recoil nucleus energy is transferred to the lattice, which leads to the creation of ballistic phonons which rapidly thermalize, i.e. increase the temperature in vertex. For 5 GeV/c2 < MDM < 15 GeV/c2 the energy of the recoiling nuclei is 0.5-2.0 keV and all this energy is deposited within a few nm. Thus, the dE/dx = O(0.1 keV/nm) is deposited in the vertex. The energy deposition is much smaller in the case of single charged, relativistic particles and corresponds to dE/dx < 1 eV/nm for single charged particles. These permits background rejection.
    We developed a very efficient read-out for such detectors. The expected detector cost is low, ca. $50,000 per ton. The deployment will be deep underwater, say at Marina Trench at depth of 11 km. Optionally, such a detector can be used as a “spaghetti detector” and placed in very deep bore-holes down to 20 km water equivalent.
    Similar detectors can be used for Emission Geo-Neutrino Tomography aka Neutrino Geology.
    Lecture
  • Date:29MondayJanuary 2018

    Organization of temporal gene expression: from promoter cycles to circadian clocks

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    Time
    13:30 - 13:30
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    LecturerDr. Felix Naef
    The Institute of Bioengineering School of Life Sciences Ecole Polytechnique Federale de Lausanne (EPFL)
    Organizer
    Department of Molecular Cell Biology
    Contact
    Lecture
  • Date:30TuesdayJanuary 2018

    A special symposium in honor of Prof. Ruhama Even

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    Time
    08:00 - 08:00
    Location
    The David Lopatie Conference Centre
    Chairperson
    Ronnie Karsenty
    Conference
  • Date:30TuesdayJanuary 2018

    Noncoding RNA in Health and Disease

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    Time
    10:00 - 11:00
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    LecturerProf. Nikolaus Rajewsky
    Scientific Director, Berlin Institute for Medical Systems Biology, Max Delbrück Center, Berlin
    Organizer
    Azrieli Institute for Systems Biology
    Contact
    Lecture
  • Date:30TuesdayJanuary 2018

    Uncovering the mechanisms underlying individuality

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    Time
    10:00 - 11:00
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerDr. Shay Stern
    The Rockefeller University, NY
    Organizer
    Department of Biomolecular Sciences
    Contact
    AbstractShow full text abstract about Individuals within the same population may show stereotyped ...»
    Individuals within the same population may show stereotyped behaviors, but also unique behaviors that distinguish them from each other, a property called individuality. While individuality in behavior is widespread across species, including humans, the underlying mechanisms that generate individual-to-individual behavioral variation remain largely unknown. In my talk, I will present a newly developed imaging system for studying long-term individuality in C. elegans by monitoring the behavior of multiple individual animals across development, from egg hatching to adulthood, spanning a full generation time. I will show that while C. elegans animals have reproducible patterns of long-term behaviors, individuals within isogenic populations show consistent behavioral biases that persist across development and distinguish them from one another. I will further describe the conserved signaling pathways I uncovered that function to regulate long-term behavior, as well as to increase or decrease the degree of individuality across the population. These studies open a new window for dissecting mechanisms that generate and shape behavioral individuality across developmental timescales.​
    Lecture

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