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September 12, 2011
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Date:09MondayJanuary 2012Lecture
Scripture: A platform for sequencing assay analysis
More information Time 09:00 - 10:30Location Ullmann Building of Life SciencesLecturer Dr. Manuel Garber Contact Abstract Show full text abstract about Scripture is a method for transcriptome reconstruction that ...» Scripture is a method for transcriptome reconstruction that relies solely on RNA-Seq reads and an assembled genome to build a transcriptome ab initio. The statistical methods to estimate read coverage significance are also applicable to other sequencing data. Scripture also has modules for ChIP-Seq peak calling. -
Date:09MondayJanuary 2012Lecture
Surname Leakage from Whole Genome Sequencing Datasets
More information Time 10:00 - 11:30Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Dr. Yaniv Erlich
MITHomepage Contact Abstract Show full text abstract about Posting annonymous sequening results without identifiers hav...» Posting annonymous sequening results without identifiers have become a common practice in large scale sequecning projects. Here, we report a novel risk of surname leakage from whole-genome sequencing datasets. Different from previously described risks, this approach does not require physical access to DNA of the target or prvious leakage of DNA data from the target. Surname leakage relies on bioinformatic profiling of short tandem repeats (STR) on the Y-chromosome and querying massive Web 2.0 genealogical databases. We demonstrate the applicability of the technique by recovering the surname ‘Venter’ from Craig Venter’s genome sequence. We also show that short read datasets are amenable to this technique. According to a conservative estimation, surname recovery would jeopardize 10% of whole genome sequencing datasets of US individuals. Moreover, the combination of a leaked surname with age and state narrows the identity of a sequencing dataset to ≤10 US individuals in most cases. As a remedy, we developed STRANGERS, a tool to mitigate the risk for surname leakage from sequencing datasets. STRANGERS uses a statistical framework that ensures maximal datasharing of Y chrmosome variations while eliminating the risk of surname leakage. -
Date:09MondayJanuary 2012Colloquia
Life Sciences Colloquium
More information Time 11:00 - 11:00Title Deciphering Mechanisms of Size and Growth Control by Novel Forward Genetic ApproachesLocation Dolfi and Lola Ebner AuditoriumLecturer Prof.Tian Xu Contact -
Date:09MondayJanuary 2012Colloquia
Faculty of Chemistry Colloquium- Dr. Elisabetta Boaretto
More information Time 11:00 - 11:00Title RADIOCARBON DATING: CHALLENGING A 200 YEAR OLD PARADIGMLocation Gerhard M.J. Schmidt Lecture HallLecturer Prof. Elisabetta Boaretto
Kimmel Center of Archaeological Science WISOrganizer Faculty of ChemistryContact Abstract Show full text abstract about Chronology in archaeology was developed long before radiocar...» Chronology in archaeology was developed long before radiocarbon dating was possible. The time sequence was based on detectable changes in the material culture. Even 60 years after the development of radiocarbon dating, this seriation model is widely used. In the last decade a major change has taken place based on integrating field work, quality control on the datable material and improvement in radiocarbon dating analysis. This new approach has resulted in high resolution absolute chronologies that in turn raise fundamental questions about timing of events, reliability of material culture changes and diffusion of ideas, trade and so on. -
Date:09MondayJanuary 2012Lecture
"Energy Efficiency in Transportation: a Key Element of the World's Energy Future"
More information Time 13:15 - 13:15Location Gerhard M.J. Schmidt Lecture HallLecturer Dr. Fred Schlachter
Lawrence Berkeley National Laboratory, Berkeley California, USA And American Physical SocietyOrganizer Faculty of ChemistryContact -
Date:09MondayJanuary 2012Lecture
Detecting Dangerous Queries: A New Approach for Chosen Ciphertext Security
More information Time 14:30 - 14:30Location Jacob Ziskind BuildingLecturer Brent Waters
University of Texas at AustinOrganizer Faculty of Mathematics and Computer ScienceContact -
Date:09MondayJanuary 2012Lecture
Molecular Neuroscience Forum Seminar
More information Time 15:00 - 15:00Title ELAV-regulated mRNA processing in synaptic plasticityLocation Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Matthias Soller
School of Biosciences Birmingham United KingdomOrganizer Department of Biomolecular SciencesHomepage Contact -
Date:09MondayJanuary 2012Lecture
מפגשים בחזית המדע
More information Time 19:15 - 21:00Location Davidson Institute of Science EducationOrganizer Science for All UnitHomepage Contact -
Date:09MondayJanuary 2012Cultural Events
"The Desire to Dance" - Ashdod Panov Ballet Theater
More information Time 20:30 - 20:30Title Best selections from classical ballet, with a special version of "Carmen"Location Michael Sela AuditoriumContact -
Date:10TuesdayJanuary 2012Lecture
"Exploring cellular and molecular mechanisms that shape synaptic function".
More information Time 10:00 - 10:00Location Wolfson Building for Biological ResearchLecturer Dr. Einat Peled
The university of California BerkleyOrganizer Department of Biomolecular SciencesContact -
Date:10TuesdayJanuary 2012Lecture
הרצאה ע"ש פרופ' עמוס דה שליט:
More information Time 11:00 - 13:00Title האם ניתן למחשב פיל?Location Michael Sela AuditoriumLecturer Prof. David Harel Organizer Science for All UnitContact -
Date:10TuesdayJanuary 2012Lecture
Hilbert's irreducibility theorem and Galois representations
More information Time 11:00 - 11:00Location Jacob Ziskind BuildingLecturer Lior Bary-Soroker
TAUOrganizer Faculty of Mathematics and Computer ScienceContact -
Date:10TuesdayJanuary 2012Lecture
" Understanding the Mechanism of Nitrogen Fixation using Low-Coordinate Iron Complexes"
More information Time 11:00 - 11:00Title Department of Organic Chemistry - a departmental seminarLocation Helen and Milton A. Kimmelman BuildingLecturer Prof. Patrick Holland
Department of Chemistry at University of RochesterOrganizer Department of Molecular Chemistry and Materials ScienceContact -
Date:10TuesdayJanuary 2012Lecture
Self assembling pore networks: high order curvature driven flows
More information Time 11:00 - 11:00Location Jacob Ziskind BuildingLecturer Nir Gavish
Michigan StateOrganizer Faculty of Mathematics and Computer ScienceContact -
Date:10TuesdayJanuary 2012Lecture
“Multi-dimensional mass spectrometry-based shotgun lipidomics and its applications for biological and biomedical research”
More information Time 11:15 - 11:15Location Ullmann Building of Life SciencesLecturer Prof. Xianlin Han
Diabetes and Obesity Research Center Sanford-Burnham Medical Research Institute Orlando, FL, USAOrganizer Department of Plant and Environmental SciencesContact -
Date:10TuesdayJanuary 2012Lecture
Developmental axon regeneration in the fly
More information Time 12:15 - 12:15Lecturer Shir Yaniv Organizer Department of Molecular Cell BiologyContact -
Date:10TuesdayJanuary 2012Lecture
Optogenetics in Primates: Progress and Opportunities for System Neuroscience and Neuroprosthetics
More information Time 12:30 - 12:30Location Gerhard M.J. Schmidt Lecture HallLecturer Dr. Ilka Diester
Ernst Strungmann Institute, Max Planck, FrankfurtOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Optogenetics is a versatile technology which is based on lig...» Optogenetics is a versatile technology which is based on light sensitive membrane proteins. Those membrane proteins are called opsins. They are derived from microbial organisms which use them to orient themselves towards or away from light of specific wavelengths. Surprisingly, opsins can be safely integrated into the membranes of neurons by using viral vectors or transgenetic techniques, thus making the neurons light-sensitive without causing any aversive reaction. When shining light pulses of different wavelengths on the opsin-expressing neurons, we can either elicit or inhibit an action potential depending on the introduced opsin. Channelrhodopsin-2, for example, is an excitatory opsin which causes neurons to spike under the influence of blue light while Halorhodopsin silences neurons during the presence of yellow light. Although just six years have passed since the term optogenetics was coined, the technique quickly became one of the favorite toys of system neuroscientists. It is already used worldwide in flies, fish and rodents. Now, monkeys bring new requirements to the table. Monkeys are extremely valuable animals and are typically trained for months or years. Hence, the number of experiments with each animal is limited and each experiment has to be well planned and be conducted with exceptional care. The efforts are well justified. Monkeys resemble humans in their cognitive abilities and fine motor skills more than any other standard animal model. They can learn categories, rules and associations, come to decisions, and grasp and manipulate objects in a very human like manner. The neural correlates of these abilities are encoded in areas that are similar to human brain areas. These similarities make monkeys essential for the translation of knowledge, techniques and cures from simpler animal models, such as rodents, to humans. I will discuss recent progress in optogenetics in primates and give a glimpse on putative medical applications with a focus on bidirectional neuroprosthetic devices. Neuroprosthetics is a field which aims to help people who lost control over one or more of their limbs due to a spinal cord injury, a neural disease, a stroke, or an amputation. By reading out signals directly from cortex, decoding them, and using these decoded signals to control a prosthetic device we can bypass the faulty circuits. I will describe the opportunities which optogenetics provide for writing in tactile information. This could allow the users of neural prostheses to not only control a robotic arm but also to feel what they are grasping. -
Date:10TuesdayJanuary 2012Lecture
"The search for functional elements in the Genome"
More information Time 13:30 - 13:30Location Wolfson Building for Biological ResearchLecturer Dr. Manuel Garber Organizer Department of Systems ImmunologyContact -
Date:10TuesdayJanuary 2012Lecture
"New Methods Solve the Recalcitrant Structure of Group II Chaperonin"
More information Time 14:00 - 14:00Location Helen and Milton A. Kimmelman BuildingOrganizer Department of Chemical and Structural BiologyContact -
Date:10TuesdayJanuary 2012Lecture
Gradient Flows on 3-folds with Boundary, Concavity, and Complexity
More information Time 16:00 - 16:00Location Jacob Ziskind BuildingLecturer Gabriel Katz
MITOrganizer Faculty of Mathematics and Computer ScienceContact
