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February 05, 2018
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Date:03TuesdayJuly 2018Lecture
Sensory processing across behavioral and neuromodulatory states
More information Time 12:30 - 12:30Location Gerhard M.J. Schmidt Lecture HallLecturer Dr. Yuval Nir
Sagol School of Neuroscience & Sackler School of Medicine Tel-Aviv UniversityOrganizer Department of Brain SciencesContact Abstract Show full text abstract about "Sensory disconnection" – conditions when the same...» "Sensory disconnection" – conditions when the same sensory stimulus does not reliably affect behavior or subjective experience - is a defining feature of sleep, and similar processes may occur during light anesthesia or during cognitive lapses in wakefulness. What are the changes in brain activity that mediate sensory disconnection? In a series of studies in humans and rodents, we investigate how "disconnected" states affect sensory processing. The first set of studies reveals differences in neuronal responses to identical sensory stimuli across states. We find that in humans, cognitive lapses after sleep deprivation involve attenuated and delayed single-neuron responses in MTL co-occurring with local slow/theta waves. In the auditory domain, we show in both rodents and humans that responses in sleep and light anesthesia are preserved up to A1, challenging the classic "thalamic gating" notion, but robust attenuation occurs later in high-level cortical regions. In addition, sleep affects more strongly responses that require integration over long time intervals, and responses to high-frequency content. The second set of studies investigates the underlying mechanisms, testing the potential role of locus coeruleus-noradrenaline (LC-NE) neuromodulation. In rats, we test how NE signaling affects the probability to wake up from sleep in response to sounds. We establish a new approach for selective in-vivo LC optogenetics by showing effects on spiking activity, evoked sleep-wake transitions, and pupil dilation. Combined LC and auditory stimulation synergistically increases the probability of awakenings beyond independent effects of sound and laser alone, supporting a role for LC-NE activity in mediating sensory responses. We also tested the effects of NE levels on sensory perception and sensory-evoked activity (EEG, fMRI) in awake humans. Pharmacologically manipulating NE levels in double-blind placebo-controlled experiments, we found that NE modulates sensitivity and accuracy of visual perception without significant effects on decision bias (criterion). In addition, NE increased the fidelity of late EEG visual responses, and selectively modulated BOLD fMRI responses in high-order visual cortex, suggesting that NE plays an enabling causal role in visual awareness by affecting late visual processing. -
Date:03TuesdayJuly 2018Lecture
MODELING PROTEIN CONFORMATIONAL CHANGES WITH CROSS-LINKS AND SAXS PROFILES
More information Time 14:00 - 15:00Location Helen and Milton A. Kimmelman BuildingLecturer Dr. Dina Schneidman
Hebrew UniversityOrganizer Department of Chemical and Structural BiologyContact Abstract Show full text abstract about Proteins generally populate multiple structural states in so...» Proteins generally populate multiple structural states in solution. Transitions between these states are important for function, such as allosteric signaling and enzyme catalysis. Structures solved by X-ray crystallography provide valuable, but static, atomic resolution structural information. In contrast, cross-linking mass spectrometry (XLMS) and small angle X-ray scattering (SAXS) datasets contain information about conformational and compositional states of the system. The challenge lies in the data interpretation since the cross-links in the data often comes from multiple structural states. We have developed a novel computational method that simultaneously uncovers the set of structural states that are consistent with a given dataset (XLMS or SAXS). The input is a single atomic structure, a list of flexible residues, and an experimental dataset. The method finds multi-state models (models that specify two or more co-existing structural states) that are consistent with the data. The method was applied on multiple SAXS and XLMS datasets, including large multi-domain proteins and proteins with long disordered fragments. The applicability of the method extends to other datasets, such as 2D class averages from Electron Microscopy, and residual dipolar couplings. -
Date:04WednesdayJuly 2018Lecture
Department of Molecular Genetics seminar for thesis defense
More information Time 15:00 - 15:00Title Ovarian Stem Cell Organization of Their EnvironmentLocation Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Doreen Ben-Zvi Organizer Department of Molecular GeneticsContact -
Date:05ThursdayJuly 2018Lecture
“2C OR NOT 2C? THE ROLE OF SHORT CHAIN FATTY ACID CATABOLISM IN PSEUDOMONAS AERUGINOSA VIRULENCE AND PATHOGENICITY”
More information Time 10:00 - 11:00Title Host Pathogen Interactions ClubLocation Max and Lillian Candiotty BuildingLecturer Prof. Martin Welch
University of Cambridge, UKOrganizer Department of Immunology and Regenerative BiologyContact -
Date:05ThursdayJuly 2018Lecture
Chemical and Biological Physics Special Guest Seminar
More information Time 11:00 - 12:00Title The Distribution of Delay Times in Scattering of Ultra–Short Radiation PulsesLocation Perlman Chemical Sciences BuildingLecturer Prof. Uzy Smilansky
Department of Physics of Complex Systems Weizmann Institute of ScienceOrganizer Department of Chemical and Biological PhysicsContact Abstract Show full text abstract about When an ultra-short pulse of radiation is scattered on a com...» When an ultra-short pulse of radiation is scattered on a complex medium, the emerging radiation pulse is broadened in time. This can be intuitively explained as due to the existence of a large number of paths of varying lengths through which the radiation can traverse the scattering medium. Recently, novel methods to produce ultra-short light pulses were introduced, and they opened a new horizon for experiments were the distribution of delay-times induced by scattering from complex targets can be measured. These developments emphasize the need for theoretical tools to aid planning of new experiments and interpret the measured results. I shall review a general approach for studying the delay-time distribution in both the classical and the quantum (wave) dynamical frameworks. In particular, I shall discuss the delay time distribution in scattering from a random medium where, due to Anderson Localization, there is no classical analogue to this genuine wave phenomenon. -
Date:05ThursdayJuly 2018Colloquia
Gene Surfing and Survival of the Luckiest
More information Time 11:15 - 12:30Location Edna and K.B. Weissman Building of Physical SciencesLecturer David R. Nelson
Lyman Laboratory Harvard UniversityOrganizer Faculty of PhysicsContact Abstract Show full text abstract about Range expansions play a crucial role in our evolutionary his...» Range expansions play a crucial role in our evolutionary history and also in human health. Descriptions of stochastic processes similar to Fokker-Planck equations are crucial for understanding the effects of mutations, number fluctuations and selective advantages. Mutations optimally positioned at the front of a growing population can increase their abundance by -
Date:10TuesdayJuly 2018Lecture
Algebraic Geometry and Representation Theory Seminar
More information Time 11:15 - 12:30Title Some comments on the lowest degree appearances of representations.Location Jacob Ziskind BuildingLecturer Prof. Anthony Joseph
WISOrganizer Faculty of Mathematics and Computer ScienceContact Abstract Show full text abstract about TBA ...» TBA -
Date:11WednesdayJuly 2018Lecture
“Determination of Nanocatalyst Structure “on-the-Fly” by a Neural Network Approach”
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Prof. Anatoly Frenkel
Department of Materials Science and Chemical Engineering, Stony Brook UniversityOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Tracking the structure of heterogeneous catalysts under oper...» Tracking the structure of heterogeneous catalysts under operando conditions remains a challenge due to the paucity of experimental techniques that can provide atomic-level information for catalytic metal species. Here we report on the use of X-ray absorption spectroscopy (XANES and EXAFS) and supervised machine learning (SML) for determining the three-dimensional geometry of metal catalysts. Artificial neural network (NN) is used to unravel the hidden relationship between the XANES features and catalyst geometry. In the case of EXAFS, NN is used to obtained the radial distribution function directly from the spectra. Our approach allows one to solve the structure of a metal catalyst from its experimental XANES and EXAFS spectra. These applications are demonstrated by reconstructing the average size, shape and morphology of well-defined platinum nanoparticles1 and monitoring structural changes in bulk Fe during its structural phase transition from BCC to FCC upon heating.2 This method is applicable to the determination of nanomaterial structure in operando studies It also allows on-the-fly analysis, and is a promising approach for high-throughput and time-dependent studies.
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Date:12ThursdayJuly 2018Colloquia
Students Colloquium
More information Time 11:15 - 12:30Location Edna and K.B. Weissman Building of Physical SciencesLecturer Adam Rubin, Gadi Afek, Yehonathan Drori, Dr. Efrat Gerchkovitz
Wizmann InstituteOrganizer Faculty of PhysicsContact -
Date:12ThursdayJuly 2018Lecture
Single-molecule Visualization of Long-range Epigenetic Regulation
More information Time 14:00 - 15:00Location Max and Lillian Candiotty BuildingLecturer Prof. Yuval Ebenstein
Department of Physical Chemistry School of Chemistry Tel Aviv UniversityOrganizer Department of Immunology and Regenerative BiologyContact Abstract Show full text abstract about Epigenetic regulation by DNA methylation is well established...» Epigenetic regulation by DNA methylation is well established in the context of the classical Promoter:Coding box.
Recent genome-wide association studies (GWAS) indicate that the methylation state of distant enhancers play a critical role in gene expression. In cancer, such distant epigenetic aberrations can have significant effects on carcinogenesis. In order to uncover these long-range interactions on the single-cell level, I present an epigenome-mapping technology based on fluorescent tagging of epigenetic marks on long individual DNA molecules. Information is read as a fluorescent genetic/epigenetic barcode that provides genome-scale profiles with extremely long reads.
I discuss our progress towards simultaneous recording of methylation and transcription information from the same molecules with the aim of discovering and characterizing epigenetic gene-regulation at a distance. -
Date:15SundayJuly 2018Lecture
Interphase Human Chromosome Exhibits Out of Equilibrium Glassy Dynamics
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Prof. Dave Thirumalai
Department of Chemistry, UT AustinOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Fingerprints of the three-dimensional organization of geno...»
Fingerprints of the three-dimensional organization of genomes have emerged using recent advances, but genome dynamics is poorly understood. Here, we create the Chromosome Copolymer Model (CCM) by representing chromosomes as a copolymer with two epigenetic loci types corresponding to euchromatin and heterochromatin. We establish quantitatively that the chromosomes 5 and 10 topology from our model and from experiment are in good agreement. Chromatin exhibits glassy dynamics with coherent motion on micron scale. The broad distribution of the diffusion exponents, which quantitatively agrees with experiments, is suggestive of highly heterogeneous dynamics, reflected in the cell- to-cell variations in the contact maps. Chromosome organization is hierarchical, involving the formation of chromosome droplets, followed by coalescence, reminiscent of Ostwald ripening.
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Date:16MondayJuly 2018Lecture
PhD Defense Seminar - Elad Bassat
More information Time 08:30 - 08:30Title Agrin: at the heart of regenerationLocation Wolfson Building for Biological ResearchLecturer Elad Bassat (Prof. Eldad Tzahor Lab) Organizer Department of Molecular Cell BiologyContact -
Date:17TuesdayJuly 2018Lecture
Human physiological and behavioral responses to olfactory stimuli in health and disease
More information Time 12:30 - 12:30Location Gerhard M.J. Schmidt Lecture HallLecturer Liron Rozenkrantz (PhD Thesis Defense)
Noam Sobel Lab, Dept of Neurobiology, WISOrganizer Department of Brain SciencesContact Abstract Show full text abstract about In my PhD I led three projects probing human behavioral and ...» In my PhD I led three projects probing human behavioral and physiological responses to olfactory stimuli in health and disease. In these projects I used every-day olfactory occurrences in order to infer on biological underpinnings of human behavior.
In my main project I tested olfactory processing in autism, using the sniff response, a ten-minute non-verbal measure of respiratory response to odors. I found this objective measure to be profoundly altered in children with autism, and furthermore, to be highly correlated with autism severity. Using computational methods, I demonstrated 81% correct ASD classification based on differences in olfactory processing alone. These results provide proof-of-concept for a potential biomarker for autism (Rozenkrantz et al, Curr Bio, 2015).
In a second and soon-to-be-submitted project, I investigated olfactory social communication in recurrent pregnancy loss (RPL), resting on a phenomenon in rodents in which females miscarry following exposure to bodily odors of non-stud males. I found that women with RPL display heightened social olfactory abilities, which were significantly correlated with number of miscarriages. Additionally, women with RPL showed significantly altered hormonal, physiological and neural responses to body odors of unfamiliar men. This project provides novel evidence for altered olfactory processing in human recurrent miscarriages.
The third project is also my first foothold in placebo effect research, which I will pursue in my postdoc. Taking advantage of the non-invasive nature of olfactory stimuli, I used an odor as the placebo carrier, and tested two groups of subjects for different creativity tests. Both groups smelled the odor, but only the placebo group was told that it increases creativity (placebo manipulation). I found that following this simple manipulation, the placebo group displayed significantly enhanced creativity (Rozenkrantz et al., PLoS one, 2017).
Taken together, these projects convey my deep interest in the interplay between human behavior and physiology.
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Date:17TuesdayJuly 2018Lecture
Link between Myosin architecture and stepping dynamics of F-Actin
More information Time 14:00 - 15:00Location Helen and Milton A. Kimmelman BuildingLecturer Prof. Dave Thirumalai
Department of Chemistry, UT AustinOrganizer Department of Chemical and Structural BiologyContact -
Date:18WednesdayJuly 2018Lecture
Developmental Club Series 2017-2018
More information Time 10:00 - 10:00Title Lysosomal-Dependent Cell Death (LDCD) and PARP-1-Induced Cell Death (parthanatos): Distinct Steps that Inter(in)sect in a Single PathwayLocation Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. Eli Arama Organizer Department of Molecular GeneticsContact -
Date:18WednesdayJuly 2018Lecture
Chemical and Biological Physics Special Seminar
More information Time 13:00 - 13:00Title Studying Charge Transport in Biological Systems using Single-Molecule JunctionsLocation Perlman Chemical Sciences BuildingLecturer Prof. Ismael Diez Peres
Department of Chemistry King's College, LondonOrganizer Department of Chemical and Biological PhysicsContact -
Date:18WednesdayJuly 2018Lecture
EGFR/Ceramide and lung cancer development under stress
More information Time 14:00 - 15:00Title Special Guest SeminarLocation Max and Lillian Candiotty BuildingLecturer Prof. Tzipi Goldkorn
Genome Center, School of Medicine University of California at DavisOrganizer Department of Immunology and Regenerative BiologyContact -
Date:22SundayJuly 2018Lecture
Thesis defence presentation by Gili Zilberman (Elinav Lab)
More information Time 10:30 - 11:30Title “In health and in sickness: Response to probiotics consumption in homeostatic and microbiome-perturbed adults.”Location Wolfson Building for Biological ResearchLecturer Gili Zilberman Organizer Department of Systems ImmunologyContact -
Date:23MondayJuly 2018Lecture
G-INCPM - Special Seminar - Prof. Jürgen Reichardt, Vice-Chancellor for Research and Innovation, Yachay Tech University, Ecuador - "Quo vadis, genoma? Lessons from Galactosemia, Prostate Cancer and Atherosclerosis"
More information Time 11:00 - 12:15Location Nancy and Stephen Grand Israel National Center for Personalized MedicineOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Juergen Reichardt will report on the genetic and biochemical...» Juergen Reichardt will report on the genetic and biochemical characterization of galactosemia mutations. Furthermore, he will
describe the molecular epidemiology of prostate cancer, incl. the racial/ethnic variation of risk and the molecular and biochemical
dissection of SNPs (single nucleotide polymorphisms), haplotypes and compound heterozygotes. These data will be related to prostate cancer prevention and the PCPT (the Prostate Cancer Prevention Trial) which enrolled 18,000 men in the US and Canada.
Furthermore, Juergen will delve into the ongoing issues with SNP databases. Lastly, he will discuss future directions in the context of his career. -
Date:23MondayJuly 2018Lecture
Microphysics of atmospheric ice: primary and secondary ice formation mechanisms
More information Time 14:00 - 15:00Location Perlman Chemical Sciences BuildingLecturer Dr. Alexei Kiselev
Karlsruhe Institute of Technology , Institute of Meteorology and Climate ResearchOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Nucleation and growth of ice crystals in atmospheric clouds ...» Nucleation and growth of ice crystals in atmospheric clouds is an important process influencing clouds’ optical properties, precipitation, and lifetime. And yet, many aspects of ice microphysics are not completely understood. Traditionally, cloud properties are studied by aircraft measurements, or by creating artificial clouds in the expansion chambers. Quite often, however, such methods fail to reveal the underlying physical and chemical processes hidden at the microscopic level. For example, the heterogeneous freezing of supercooled cloud droplets can be enhanced by aerosol, but only one in ten thousand aerosol particles would serve as a potential ice-nucleating particle (INP). Understanding of what makes a good INP is required for the development of reliable cloud description in the climate models. Another example of an insufficiently understood process is the multiplication of ice crystals, a process that can lead to a rapid cloud glaciation without the need for high INP concentration.
This talk will review our recent efforts on the characterization of ice nucleating properties of mineral dust on the example of feldspar, a rock-forming mineral that has been recently identified as an important component of atmospheric mineral dust aerosol. I will demonstrate how a coherent combination of several modern laboratory methods and atomistic simulations can deliver new insights into the nature of heterogeneous nucleation of ice. I will also discuss the production of secondary ice particles by freezing drizzle droplets observed with a high-speed video camera. This secondary ice production mechanisms, together with the well-known Hallett-Mossop ice splintering, has been suggested as one of the possible pathways of ice multiplication in the developed mixed-phase clouds. Finally, the atmospheric implication of the observed phenomena will be discussed.
