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June 01, 2018

  • Date:01SundayJuly 201812ThursdayJuly 2018

    Physicists working on Cancer

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    Time
    08:00 - 08:00
    Location
    Edna and K.B. Weissman Building of Physical Sciences
    Chairperson
    Hadar Alper
    Organizer
    Faculty of Physics
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    Conference
  • Date:01SundayJuly 2018

    Microbial Interactions and Climate Reconstructions

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    Time
    11:00 - 11:00
    Location
    Sussman Family Building for Environmental Sciences
    LecturerProf. Einat Segev
    Department of Plant and Environmental Sciences Weizmann Institute of Science
    Organizer
    Department of Earth and Planetary Sciences
    Contact
    AbstractShow full text abstract about Micro-algae greatly influence present and past oceans. Recen...»
    Micro-algae greatly influence present and past oceans. Recently we have come to realize that bacteria interact with micro-algae in various ways, ranging from pathogenicity to mutualism. My research investigates physical and chemical interactions between micro-algae and bacteria across multiple scales; from the chemical crosstalk to the influence these interactions have on the marine environment.
    In my talk I will introduce Emiliania huxleyi, the most prevalent micro-alga in modern oceans. I will discuss the role of bacteria as hidden farmers that control the life cycle of algae, determining how fast algae will grow and how fast they will die. I will link laboratory findings to work conducted at sea and demonstrate the importance of these findings in the study of proxies for climate reconstructions.
    Lecture
  • Date:01SundayJuly 2018

    Molecular Genetics Departmental Seminars 2017-2018

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    Time
    13:15 - 13:15
    Title
    "Induction of DNA damage response by a small viral RNA fragment"
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    LecturerDr. Karin Broennimann
    Organizer
    Department of Molecular Genetics
    Contact
    Lecture
  • Date:02MondayJuly 2018

    Mediterranean cyclones: impact on climate and dynamics

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    Time
    11:00 - 11:00
    Location
    Sussman Family Building for Environmental Sciences
    LecturerEmmanouil Flaounas
    National Observatory of Athens
    Organizer
    Department of Earth and Planetary Sciences
    Contact
    Lecture
  • Date:03TuesdayJuly 2018

    Sensory processing across behavioral and neuromodulatory states

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    Time
    12:30 - 12:30
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerDr. Yuval Nir
    Sagol School of Neuroscience & Sackler School of Medicine Tel-Aviv University
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about "Sensory disconnection" – conditions when the same...»
    "Sensory disconnection" – conditions when the same sensory stimulus does not reliably affect behavior or subjective experience - is a defining feature of sleep, and similar processes may occur during light anesthesia or during cognitive lapses in wakefulness. What are the changes in brain activity that mediate sensory disconnection? In a series of studies in humans and rodents, we investigate how "disconnected" states affect sensory processing. The first set of studies reveals differences in neuronal responses to identical sensory stimuli across states. We find that in humans, cognitive lapses after sleep deprivation involve attenuated and delayed single-neuron responses in MTL co-occurring with local slow/theta waves. In the auditory domain, we show in both rodents and humans that responses in sleep and light anesthesia are preserved up to A1, challenging the classic "thalamic gating" notion, but robust attenuation occurs later in high-level cortical regions. In addition, sleep affects more strongly responses that require integration over long time intervals, and responses to high-frequency content. The second set of studies investigates the underlying mechanisms, testing the potential role of locus coeruleus-noradrenaline (LC-NE) neuromodulation. In rats, we test how NE signaling affects the probability to wake up from sleep in response to sounds. We establish a new approach for selective in-vivo LC optogenetics by showing effects on spiking activity, evoked sleep-wake transitions, and pupil dilation. Combined LC and auditory stimulation synergistically increases the probability of awakenings beyond independent effects of sound and laser alone, supporting a role for LC-NE activity in mediating sensory responses. We also tested the effects of NE levels on sensory perception and sensory-evoked activity (EEG, fMRI) in awake humans. Pharmacologically manipulating NE levels in double-blind placebo-controlled experiments, we found that NE modulates sensitivity and accuracy of visual perception without significant effects on decision bias (criterion). In addition, NE increased the fidelity of late EEG visual responses, and selectively modulated BOLD fMRI responses in high-order visual cortex, suggesting that NE plays an enabling causal role in visual awareness by affecting late visual processing.
    Lecture
  • Date:03TuesdayJuly 2018

    MODELING PROTEIN CONFORMATIONAL CHANGES WITH CROSS-LINKS AND SAXS PROFILES

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    Time
    14:00 - 15:00
    Location
    Helen and Milton A. Kimmelman Building
    LecturerDr. Dina Schneidman
    Hebrew University
    Organizer
    Department of Chemical and Structural Biology
    Contact
    AbstractShow full text abstract about Proteins generally populate multiple structural states in so...»
    Proteins generally populate multiple structural states in solution. Transitions between these states are important for function, such as allosteric signaling and enzyme catalysis. Structures solved by X-ray crystallography provide valuable, but static, atomic resolution structural information. In contrast, cross-linking mass spectrometry (XLMS) and small angle X-ray scattering (SAXS) datasets contain information about conformational and compositional states of the system. The challenge lies in the data interpretation since the cross-links in the data often comes from multiple structural states. We have developed a novel computational method that simultaneously uncovers the set of structural states that are consistent with a given dataset (XLMS or SAXS). The input is a single atomic structure, a list of flexible residues, and an experimental dataset. The method finds multi-state models (models that specify two or more co-existing structural states) that are consistent with the data. The method was applied on multiple SAXS and XLMS datasets, including large multi-domain proteins and proteins with long disordered fragments. The applicability of the method extends to other datasets, such as 2D class averages from Electron Microscopy, and residual dipolar couplings.
    Lecture
  • Date:04WednesdayJuly 2018

    Department of Molecular Genetics seminar for thesis defense

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    Time
    15:00 - 15:00
    Title
    Ovarian Stem Cell Organization of Their Environment
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    LecturerDoreen Ben-Zvi
    Organizer
    Department of Molecular Genetics
    Contact
    Lecture
  • Date:05ThursdayJuly 2018

    “2C OR NOT 2C? THE ROLE OF SHORT CHAIN FATTY ACID CATABOLISM IN PSEUDOMONAS AERUGINOSA VIRULENCE AND PATHOGENICITY”

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    Time
    10:00 - 11:00
    Title
    Host Pathogen Interactions Club
    Location
    Max and Lillian Candiotty Building
    LecturerProf. Martin Welch
    University of Cambridge, UK
    Organizer
    Department of Immunology and Regenerative Biology
    Contact
    Lecture
  • Date:05ThursdayJuly 2018

    Chemical and Biological Physics Special Guest Seminar

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    Time
    11:00 - 12:00
    Title
    The Distribution of Delay Times in Scattering of Ultra–Short Radiation Pulses
    Location
    Perlman Chemical Sciences Building
    LecturerProf. Uzy Smilansky
    Department of Physics of Complex Systems Weizmann Institute of Science
    Organizer
    Department of Chemical and Biological Physics
    Contact
    AbstractShow full text abstract about When an ultra-short pulse of radiation is scattered on a com...»
    When an ultra-short pulse of radiation is scattered on a complex medium, the emerging radiation pulse is broadened in time. This can be intuitively explained as due to the existence of a large number of paths of varying lengths through which the radiation can traverse the scattering medium. Recently, novel methods to produce ultra-short light pulses were introduced, and they opened a new horizon for experiments were the distribution of delay-times induced by scattering from complex targets can be measured. These developments emphasize the need for theoretical tools to aid planning of new experiments and interpret the measured results. I shall review a general approach for studying the delay-time distribution in both the classical and the quantum (wave) dynamical frameworks. In particular, I shall discuss the delay time distribution in scattering from a random medium where, due to Anderson Localization, there is no classical analogue to this genuine wave phenomenon.
    Lecture
  • Date:05ThursdayJuly 2018

    Gene Surfing and Survival of the Luckiest

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    Time
    11:15 - 12:30
    Location
    Edna and K.B. Weissman Building of Physical Sciences
    LecturerDavid R. Nelson
    Lyman Laboratory Harvard University
    Organizer
    Faculty of Physics
    Contact
    AbstractShow full text abstract about Range expansions play a crucial role in our evolutionary his...»
    Range expansions play a crucial role in our evolutionary history and also in human health. Descriptions of stochastic processes similar to Fokker-Planck equations are crucial for understanding the effects of mutations, number fluctuations and selective advantages. Mutations optimally positioned at the front of a growing population can increase their abundance by
    Colloquia
  • Date:10TuesdayJuly 2018

    Algebraic Geometry and Representation Theory Seminar

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    Time
    11:15 - 12:30
    Title
    Some comments on the lowest degree appearances of representations.
    Location
    Jacob Ziskind Building
    LecturerProf. Anthony Joseph
    WIS
    Organizer
    Faculty of Mathematics and Computer Science
    Contact
    AbstractShow full text abstract about TBA ...»
    TBA
    Lecture
  • Date:11WednesdayJuly 2018

    “Determination of Nanocatalyst Structure “on-the-Fly” by a Neural Network Approach”

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    Time
    11:00 - 12:00
    Location
    Perlman Chemical Sciences Building
    LecturerProf. Anatoly Frenkel
    Department of Materials Science and Chemical Engineering, Stony Brook University
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Tracking the structure of heterogeneous catalysts under oper...»
    Tracking the structure of heterogeneous catalysts under operando conditions remains a challenge due to the paucity of experimental techniques that can provide atomic-level information for catalytic metal species. Here we report on the use of X-ray absorption spectroscopy (XANES and EXAFS) and supervised machine learning (SML) for determining the three-dimensional geometry of metal catalysts. Artificial neural network (NN) is used to unravel the hidden relationship between the XANES features and catalyst geometry. In the case of EXAFS, NN is used to obtained the radial distribution function directly from the spectra. Our approach allows one to solve the structure of a metal catalyst from its experimental XANES and EXAFS spectra. These applications are demonstrated by reconstructing the average size, shape and morphology of well-defined platinum nanoparticles1 and monitoring structural changes in bulk Fe during its structural phase transition from BCC to FCC upon heating.2 This method is applicable to the determination of nanomaterial structure in operando studies It also allows on-the-fly analysis, and is a promising approach for high-throughput and time-dependent studies.

    Lecture
  • Date:12ThursdayJuly 2018

    Students Colloquium

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    Time
    11:15 - 12:30
    Location
    Edna and K.B. Weissman Building of Physical Sciences
    LecturerAdam Rubin, Gadi Afek, Yehonathan Drori, Dr. Efrat Gerchkovitz
    Wizmann Institute
    Organizer
    Faculty of Physics
    Contact
    Colloquia
  • Date:12ThursdayJuly 2018

    Single-molecule Visualization of Long-range Epigenetic Regulation

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    Time
    14:00 - 15:00
    Location
    Max and Lillian Candiotty Building
    LecturerProf. Yuval Ebenstein
    Department of Physical Chemistry School of Chemistry Tel Aviv University
    Organizer
    Department of Immunology and Regenerative Biology
    Contact
    AbstractShow full text abstract about Epigenetic regulation by DNA methylation is well established...»
    Epigenetic regulation by DNA methylation is well established in the context of the classical Promoter:Coding box.
    Recent genome-wide association studies (GWAS) indicate that the methylation state of distant enhancers play a critical role in gene expression. In cancer, such distant epigenetic aberrations can have significant effects on carcinogenesis. In order to uncover these long-range interactions on the single-cell level, I present an epigenome-mapping technology based on fluorescent tagging of epigenetic marks on long individual DNA molecules. Information is read as a fluorescent genetic/epigenetic barcode that provides genome-scale profiles with extremely long reads.
    I discuss our progress towards simultaneous recording of methylation and transcription information from the same molecules with the aim of discovering and characterizing epigenetic gene-regulation at a distance.
    Lecture
  • Date:15SundayJuly 2018

    Interphase Human Chromosome Exhibits Out of Equilibrium Glassy Dynamics

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    Time
    11:00 - 12:00
    Location
    Perlman Chemical Sciences Building
    LecturerProf. Dave Thirumalai
    Department of Chemistry, UT Austin
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Fingerprints of the three-dimensional organization of geno...»

    Fingerprints of the three-dimensional organization of genomes have emerged using recent advances, but genome dynamics is poorly understood. Here, we create the Chromosome Copolymer Model (CCM) by representing chromosomes as a copolymer with two epigenetic loci types corresponding to euchromatin and heterochromatin. We establish quantitatively that the chromosomes 5 and 10 topology from our model and from experiment are in good agreement. Chromatin exhibits glassy dynamics with coherent motion on micron scale. The broad distribution of the diffusion exponents, which quantitatively agrees with experiments, is suggestive of highly heterogeneous dynamics, reflected in the cell- to-cell variations in the contact maps. Chromosome organization is hierarchical, involving the formation of chromosome droplets, followed by coalescence, reminiscent of Ostwald ripening.

    Lecture
  • Date:16MondayJuly 2018

    PhD Defense Seminar - Elad Bassat

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    Time
    08:30 - 08:30
    Title
    Agrin: at the heart of regeneration
    Location
    Wolfson Building for Biological Research
    LecturerElad Bassat (Prof. Eldad Tzahor Lab)
    Organizer
    Department of Molecular Cell Biology
    Contact
    Lecture
  • Date:17TuesdayJuly 2018

    Human physiological and behavioral responses to olfactory stimuli in health and disease

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    Time
    12:30 - 12:30
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerLiron Rozenkrantz (PhD Thesis Defense)
    Noam Sobel Lab, Dept of Neurobiology, WIS
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about In my PhD I led three projects probing human behavioral and ...»
    In my PhD I led three projects probing human behavioral and physiological responses to olfactory stimuli in health and disease. In these projects I used every-day olfactory occurrences in order to infer on biological underpinnings of human behavior.
    In my main project I tested olfactory processing in autism, using the sniff response, a ten-minute non-verbal measure of respiratory response to odors. I found this objective measure to be profoundly altered in children with autism, and furthermore, to be highly correlated with autism severity. Using computational methods, I demonstrated 81% correct ASD classification based on differences in olfactory processing alone. These results provide proof-of-concept for a potential biomarker for autism (Rozenkrantz et al, Curr Bio, 2015).
    In a second and soon-to-be-submitted project, I investigated olfactory social communication in recurrent pregnancy loss (RPL), resting on a phenomenon in rodents in which females miscarry following exposure to bodily odors of non-stud males. I found that women with RPL display heightened social olfactory abilities, which were significantly correlated with number of miscarriages. Additionally, women with RPL showed significantly altered hormonal, physiological and neural responses to body odors of unfamiliar men. This project provides novel evidence for altered olfactory processing in human recurrent miscarriages.
    The third project is also my first foothold in placebo effect research, which I will pursue in my postdoc. Taking advantage of the non-invasive nature of olfactory stimuli, I used an odor as the placebo carrier, and tested two groups of subjects for different creativity tests. Both groups smelled the odor, but only the placebo group was told that it increases creativity (placebo manipulation). I found that following this simple manipulation, the placebo group displayed significantly enhanced creativity (Rozenkrantz et al., PLoS one, 2017).
    Taken together, these projects convey my deep interest in the interplay between human behavior and physiology.
    Lecture
  • Date:17TuesdayJuly 2018

    Link between Myosin architecture and stepping dynamics of F-Actin

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    Time
    14:00 - 15:00
    Location
    Helen and Milton A. Kimmelman Building
    LecturerProf. Dave Thirumalai
    Department of Chemistry, UT Austin
    Organizer
    Department of Chemical and Structural Biology
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    Lecture
  • Date:18WednesdayJuly 2018

    Developmental Club Series 2017-2018

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    Time
    10:00 - 10:00
    Title
    Lysosomal-Dependent Cell Death (LDCD) and PARP-1-Induced Cell Death (parthanatos): Distinct Steps that Inter(in)sect in a Single Pathway
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    LecturerProf. Eli Arama
    Organizer
    Department of Molecular Genetics
    Contact
    Lecture
  • Date:18WednesdayJuly 2018

    Chemical and Biological Physics Special Seminar

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    Time
    13:00 - 13:00
    Title
    Studying Charge Transport in ‎Biological Systems using Single-‎Molecule Junctions
    Location
    Perlman Chemical Sciences Building
    LecturerProf. Ismael Diez Peres‎
    Department of Chemistry King's College, London
    Organizer
    Department of Chemical and Biological Physics
    Contact
    Lecture

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