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June 01, 2018
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Date:18WednesdayJuly 2018Lecture
EGFR/Ceramide and lung cancer development under stress
More information Time 14:00 - 15:00Title Special Guest SeminarLocation Max and Lillian Candiotty BuildingLecturer Prof. Tzipi Goldkorn
Genome Center, School of Medicine University of California at DavisOrganizer Department of Immunology and Regenerative BiologyContact -
Date:22SundayJuly 2018Lecture
Thesis defence presentation by Gili Zilberman (Elinav Lab)
More information Time 10:30 - 11:30Title “In health and in sickness: Response to probiotics consumption in homeostatic and microbiome-perturbed adults.”Location Wolfson Building for Biological ResearchLecturer Gili Zilberman Organizer Department of Systems ImmunologyContact -
Date:23MondayJuly 2018Lecture
G-INCPM - Special Seminar - Prof. Jürgen Reichardt, Vice-Chancellor for Research and Innovation, Yachay Tech University, Ecuador - "Quo vadis, genoma? Lessons from Galactosemia, Prostate Cancer and Atherosclerosis"
More information Time 11:00 - 12:15Location Nancy and Stephen Grand Israel National Center for Personalized MedicineOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Juergen Reichardt will report on the genetic and biochemical...» Juergen Reichardt will report on the genetic and biochemical characterization of galactosemia mutations. Furthermore, he will
describe the molecular epidemiology of prostate cancer, incl. the racial/ethnic variation of risk and the molecular and biochemical
dissection of SNPs (single nucleotide polymorphisms), haplotypes and compound heterozygotes. These data will be related to prostate cancer prevention and the PCPT (the Prostate Cancer Prevention Trial) which enrolled 18,000 men in the US and Canada.
Furthermore, Juergen will delve into the ongoing issues with SNP databases. Lastly, he will discuss future directions in the context of his career. -
Date:23MondayJuly 2018Lecture
Microphysics of atmospheric ice: primary and secondary ice formation mechanisms
More information Time 14:00 - 15:00Location Perlman Chemical Sciences BuildingLecturer Dr. Alexei Kiselev
Karlsruhe Institute of Technology , Institute of Meteorology and Climate ResearchOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Nucleation and growth of ice crystals in atmospheric clouds ...» Nucleation and growth of ice crystals in atmospheric clouds is an important process influencing clouds’ optical properties, precipitation, and lifetime. And yet, many aspects of ice microphysics are not completely understood. Traditionally, cloud properties are studied by aircraft measurements, or by creating artificial clouds in the expansion chambers. Quite often, however, such methods fail to reveal the underlying physical and chemical processes hidden at the microscopic level. For example, the heterogeneous freezing of supercooled cloud droplets can be enhanced by aerosol, but only one in ten thousand aerosol particles would serve as a potential ice-nucleating particle (INP). Understanding of what makes a good INP is required for the development of reliable cloud description in the climate models. Another example of an insufficiently understood process is the multiplication of ice crystals, a process that can lead to a rapid cloud glaciation without the need for high INP concentration.
This talk will review our recent efforts on the characterization of ice nucleating properties of mineral dust on the example of feldspar, a rock-forming mineral that has been recently identified as an important component of atmospheric mineral dust aerosol. I will demonstrate how a coherent combination of several modern laboratory methods and atomistic simulations can deliver new insights into the nature of heterogeneous nucleation of ice. I will also discuss the production of secondary ice particles by freezing drizzle droplets observed with a high-speed video camera. This secondary ice production mechanisms, together with the well-known Hallett-Mossop ice splintering, has been suggested as one of the possible pathways of ice multiplication in the developed mixed-phase clouds. Finally, the atmospheric implication of the observed phenomena will be discussed.
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Date:23MondayJuly 2018Lecture
PhD Defense Seminar - Eran Kotler
More information Time 15:00 - 15:00Location Wolfson Building for Biological ResearchLecturer Eran Kotler Organizer Department of Molecular Cell BiologyContact -
Date:25WednesdayJuly 2018Lecture
Metamaterials: Going Beyond What Nature Gives Us
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Prof. Amy Szuchmacher Blum
Dept. of Chemistry, McGill UniversityOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Material properties generally arise from the chemical identi...» Material properties generally arise from the chemical identities of the constituents. However, as our understanding of how electromagnetic waves interact with matter has grown, it has become possible to design materials whose properties depend on structure rather than composition to produce effects not seen before in nature. These newly developed materials, known as metamaterials, will be the focus of this talk. Metamaterials describe a class of materials in which material properties arise from the interaction of electromagnetic waves with the sub-wavelength sized component structures that constitute them.
It has become clear that producing nano-based materials such as metamaterials requires breakthroughs in the ability to position materials with nanometer precision. This desire has led to a growing interest in bottom-up, self-assembling systems. Our approach is to use biomolecules as scaffolds because of the specificity and versatility they provide. The use of viruses as nanoscale scaffolds offers the promise of exquisite control for positioning, using a particle that can undergo further self-assembly into extended structures, and allowing the simultaneous creation of many identical complex submicron geometrical structures.
Here, we present tobacco mosaic virus (TMV) coat protein as a template to produce nanostructured metamaterials. We construct plasmonically coupled nanorings on a sub-30nm size scale using a disk-shaped aggregate of TMV as a template. Computational models suggest that these rings may display metamaterial behavior at optical frequencies. Ensemble spectroscopic measurements reveal intriguing optical properties. Preliminary dark field scattering data, obtained for individual surface bound ring structures, is remarkably consistent with ensemble measurements, demonstrating that the observed optical properties arise from the ring structures. Thus, we show the utility of virus templates in generating nanostructured building blocks for advanced materials.
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Date:26ThursdayJuly 2018Lecture
Neural circuits for skilled forelimb movement
More information Time 11:00 - 11:00Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Eiman Azim
Molecular Neurobiology Laboratory Salk Institute for Biological Studies, La Jolla, CAOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Movement shapes our interactions with the world, providing a...» Movement shapes our interactions with the world, providing a means to translate intent into action. Among the wide repertoire of mammalian motor behaviors, the precise coordination of limb muscles to propel arms, hands and digits through space with speed and precision represents one of the more impressive achievements of the motor system. Skilled forelimb movements emerge from interactions between feedforward command pathways that induce muscle contraction and feedback systems that report and refine movement. Two broad classes of feedback modify motor output: one that originates in the periphery, and a second that is generated within the central nervous system itself. Yet the mechanisms by which these feedback pathways influence forelimb movement remain poorly understood.
We take advantage of the genetic tractability of mice to examine the organization of motor circuits and define the ways in which these pathways enable dexterous behaviors. First, I will discuss recent studies that explore the transmission of proprioceptive and cutaneous signals from the forelimb into the spinal cord and brainstem, describing neural circuits that modulate the strength of this peripheral feedback and the implications of this sensory gain control for limb movement. Second, I will describe work exploring a diverse class of spinal interneurons that we hypothesize convey copies of forelimb motor commands as internal feedback to the cerebellum, enabling online predictions of motor outcome and reducing dependence on delayed sensory information. Through a complementary set of molecular, anatomical, electrophysiological and behavioral approaches, these findings are yielding insight into the organizational and functional logic of peripheral and internal feedback, and revealing how the circuits that convey feedback information help to orchestrate skilled behavior.
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Date:26ThursdayJuly 2018Lecture
Cancer persisters
More information Time 14:00 - 15:00Title Cancer Research ClubLocation Max and Lillian Candiotty BuildingLecturer Prof. Ravid Straussman
Dept. of Molecular Cell Biology, WISOrganizer Department of Immunology and Regenerative BiologyContact Abstract Show full text abstract about Persister cells are considered a unique, small sub-populatio...» Persister cells are considered a unique, small sub-population of cancer cells that maintain viability under anti-cancer treatments.
Persisters do not harbor classic resistance-mediating genetic mutations, and their drug-resistance phenotype is thought to be reversible.
I will describe our novel findings related to the persisters phenotype and how these findings can be exploited to rationally design novel drug combinations optimized to eliminate persisters. -
Date:01WednesdayAugust 2018Lecture
Ion irradiation in the technology of perpendicular magnetic tunnel junctions
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Prof. Nikolai A. Sobolev
Department of Physics and I3N, University of AveiroOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about The magnetic properties of ultrathin magnetic films and mult...» The magnetic properties of ultrathin magnetic films and multilayers, e.g. magnetic anisotropies and exchange coupling, strongly depend on the surface and interface structure. Chemical composition, crystallinity, grain sizes and their distribution govern the magnetic behaviour. All these structural properties can be modified by particle irradiation. Magnetic patterning without affecting the surface topography becomes feasible, which may be of interest in applications. Homogeneous ion irradiation through masks and focused ion beam and ion projection lithography can be applied for patterning. The creation of magnetic feature sizes down to a few ten nm is possible. The main areas are magnetic data storage applications, such as hard magnetic media with a large perpendicular magnetic anisotropy (PMA) or patterned media with an improved signal-to-noise ratio and magnetic sensor elements.
The PMA is very common at magnetic metal/oxide interfaces. It is thought to be a result of electronic hybridization between the oxygen and the magnetic transition metal orbit across the interface. Interest in this phenomenon appeared in 2010 when it was demonstrated that the PMA at magnetic transition metal/oxide interfaces could be used to build out-of-plane magnetized magnetic tunnel junctions (MTJ) for spin-transfer-torque magnetic random access memory (STT-MRAM) cells. In these systems, the PMA at the CoFeB/MgO interface can be used to simultaneously obtain good memory retention, thanks to the large PMA amplitude, and a low write current, thanks to a relatively weak Gilbert damping.
I’ll give a short overview over the irradiation experiments aiming at a modification of magnetic and magnetoresistive properties of different layered magnetic structures. Then I’ll describe in detail our recent experiments on ion irradiation of double-MgO free layers designed for application in perpendicular MTJ. The samples comprised a MgO / FeCoB / X / FeCoB / MgO layer stack, where X stands for an ultrathin (0.2 nm) Ta or W spacer. In particular, we have induced easy-cone states, with different cone angles, in thin (tFeCoB = 2.6 nm) free layers with a W spacer, initially exhibiting a uniaxial anisotropy. This easy cone only exists if K1 > 0, K2 < 0 and – K2 > 2K1, with K1 and K2 being the first- and second-order anisotropy constants. Easy-cone anisotropy may help reduce the stochasticity of the spin transfer torque switching. Importantly, no increase in the Gilbert damping after irradiation has been observed.
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Date:01WednesdayAugust 2018Lecture
Semiempirical Quantum Chemical Methods: Developments and Validation
More information Time 14:00 - 15:00Location Perlman Chemical Sciences BuildingLecturer Dr. Pavlo O. Dral
Max Planck Institute for Coal Research, Mülheim an der RuhrOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Semiempirical quantum chemical (SQC) methods are indispensa...» Semiempirical quantum chemical (SQC) methods are indispensable for performing many computational chemistry studies. They are often used for exploring large systems and carrying out large number of computations within reasonable amount of time.
My research is focused on the development of SQC methods based on the neglect of diatomic differential overlap (NDDO) integral approximation. In my presentation, I will first talk about our implementation of semiempirical unrestricted natural orbital–configuration interaction (UNO–CI) methods. They allow for black-box selection of active space orbitals, while being thousand times faster than common TD DFT techniques and often are as accurate or even better than TD DFT, which makes them useful for example in studies of organic photovoltaics materials. I will also show that semiempirical methods are useful for understanding unique electronic properties of carbon peopods used as ambipolar transistors and predicting reactivity of radicals via calculating unrestricted local electron affinities and ionization potentials.
Then I will talk about orthogonalization-corrected methods (OMx).We benchmarked these methods against huge collection of accurate reference data to identify their strengths and weaknesses for groundand excited-state properties, and specifically for noncovalent interactions, to compare with traditional MNDO-based methods and to identify the direction of future developments. Among the reference data, the W4-11 benchmark set proved to be very useful for both validation and development of new orthogonalization- and dispersion-corrected methods (ODMx). The ODMx methods have been carefully designed to be generally better than OMx methods for both ground- and excited-state properties and are as good as OMx for noncovalent interactions.[10] The new methods have also more consistent formalism for calculating heats of formation.
Finally, I will talk about how machine learning can be used to improve the accuracy of semiempirical methods.
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Date:01WednesdayAugust 2018Lecture
The role of TrpC2 channel in mediating social behavior of male mice within a group
More information Time 14:00 - 14:00Location Nella and Leon Benoziyo Building for Brain ResearchLecturer Yefim Pen (PhD Thesis Defense)
Tali Kimchi Lab, Dept of Neurobiology, WISOrganizer Department of Brain SciencesContact -
Date:12SundayAugust 2018Lecture
Regulation of the blood-cerebrospinal fluid barrier as a gateway for leukocyte trafficking in physiology and pathology
More information Time 15:00 - 15:00Location Nella and Leon Benoziyo Building for Brain ResearchLecturer Alexander Kertser (PhD Thesis Defense)
Michal Schwartz Lab, Dept of Neurobiology, WISOrganizer Department of Brain SciencesContact -
Date:13MondayAugust 2018Lecture
Catecholamines in the hippocampal formation
More information Time 10:00 - 11:15Location Gerhard M.J. Schmidt Lecture HallLecturer Sima Verbitsky (PhD Thesis Defense)
Menahem Segal Lab, Dept of Neurobiology, WISOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Monoaminergic (noradrenergic, dopaminergic and serotonergic)...» Monoaminergic (noradrenergic, dopaminergic and serotonergic) modulation of hippocampal activity is assumed to play a major role in neuronal plasticity, learning and memory. Understanding the locus of action of these neuromodulators at the cellular level will expand our knowledge of their nature and allow us to identify issues related to their dysfunction. In the present work I study the effects of norepinephrine (NE) and dopamine (DA) on spontaneous and evoked activity in patch-clamped neurons of hippocampal slices. Both DA and NE induced a significant decrease in the amplitude of the evoked PSCs recorded from CA1 pyramidal neurons in response to stimulation of the Schaffer collaterals, accompanied by a small decrease in the cell input resistance, and a small hyperpolarization. While decreasing the evoked PSCs, NE promoted an overall increase in spontaneous synaptic activity. Pharmacological assessment of these results indicated an α1 adrenergic receptor involvement in both the decrease of the amplitude of evoked PSCs as well as the increase in spontaneous activity. Surprisingly, the effect of NE on evoked PSCs was partially antagonized by D1 dopaminergic receptor antagonist SCH23390, which suggests that NE activates dopamine receptors. The effect of DA on evoked PSCs was blocked by α1 adrenergic receptor antagonist prazosin, which suggests that DA, in turn, is activating adrenergic receptors.
Noradrenergic system is highly affected by stress; in particular, the differences between NE effects in dorsal and ventral hippocampus (DH and VH, respectively) have been shown to change in stressed animals.
In this work I used two types of stress protocols – Prenatal Stress (PS) and Acute Stress (AS) – to study the effect of stress on monoamine responses in slices of DH and VH. In non-stressed rats, NE effect on the evoked PSCs is larger in DH than in VH. PS and AS rats increased NE effect in VH, thus abolishing the difference between DH and VH. Pharmacological data suggests that these differences result from differential efficiencies of α1 and D1 receptors between DH and VH of both control and PS rats. Acute stress reversed the difference between PS and control rats; in the AS slices the PSC reduction was significantly different between DH and VH of PS rats, and not in control rats.
I conclude that stress increases the NE modulation in VH, but not in DH, thus increasing the role of emotional processing associated with the VH.
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Date:21TuesdayAugust 2018Lecture
Clinical Research-Trials and Tribulations, Peril and Promise
More information Time 14:00 - 15:00Title Special Guest Roundtable SeminarLocation Max and Lillian Candiotty BuildingLecturer Prof. Adrian Langleben
Director, Medical Oncology, Royal Victoria Hospital, McGill University. McGill University Department of Medical Oncology, Montreal, CanadaOrganizer Department of Immunology and Regenerative BiologyContact -
Date:27MondayAugust 2018Lecture
In situ structural studies of the cell cytoskeleton by cryo-electron tomography
More information Time 14:00 - 15:00Title Special Guest SeminarLocation Max and Lillian Candiotty BuildingLecturer Prof. Ohad Medalia
Department of Biochemistry University of Zurich, SwitzerlandOrganizer Department of Immunology and Regenerative BiologyContact Abstract Show full text abstract about Recent advances in cryo-electron microscopy revolutionized t...» Recent advances in cryo-electron microscopy revolutionized the possibilities and capabilities of structural analysis. This presents an exciting opportunity to explore the architecture of macromolecular-complexes which could not be crystallized, but also opens a window into in situ structural determination. Here, I will discuss the excitement in resolving macromolecular structures at atomic resolution and report on advances and challenges in studying molecular assemblies in individual cells and multicellular organisms at ~1nm of resolution. A special focus will be given to the functional organization of the cell’s cytoskeleton, i.e., the actin cytoskeleton, intermediate filaments and nuclear lamins. Our study indicates that in situ structural biology, at high-resolution, shed light on structural assemblies that can only be studied in their native environment, i.e. the cell. -
Date:28TuesdayAugust 201830ThursdayAugust 2018Conference
WHELMI
More information Time 08:00 - 08:00Location Edna and K.B. Weissman Building of Physical SciencesChairperson Perla Zalcberg -
Date:28TuesdayAugust 2018Lecture
Thesis defence presentation by Avital Barak (Prof. Idit Shachar's lab)
More information Time 10:30 - 10:30Title Unveiling key players in the CLL-microenvironment interplay.Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Avital Barak Organizer Department of Systems ImmunologyContact -
Date:29WednesdayAugust 2018Lecture
Learning probabilistic representations in randomly connected neural circuits
More information Time 10:30 - 10:30Location Gerhard M.J. Schmidt Lecture HallLecturer Ori Maoz (PhD Thesis Defense)
Elad Schneidman Lab, Dept of Neurobiology, WISOrganizer Department of Brain SciencesContact Abstract Show full text abstract about The brain represents and reasons probabilistically about com...» The brain represents and reasons probabilistically about complex stimuli and motor actions using a noisy, spike-based neural code. A key building block for such neural computations, as well as the basis for supervised and unsupervised learning, is the ability to estimate the surprise or likelihood of incoming high-dimensional neural activity patterns. Despite progress in statistical modeling of neural responses and deep learning, current approaches either do not scale to large neural populations or cannot be implemented using biologically realistic mechanisms. Inspired by the sparse and random connectivity of real neuronal circuits, we present a new model for neural codes that accurately estimates the likelihood of individual spiking patterns from the joint activities of actual populations of cortical neurons. The model has a straightforward, scalable, efficiently learnable, and realistic neural implementation as either a randomly connected neural circuit or as single neuron with a random dendritic tree. In the corresponding implementation, a neuron can take advantage of random connectivity leading to it in order to autonomously learn the respond with the surprise of its input patterns based on the previous observed patterns. Importantly, it can be achieved using a local learning rule that utilizes noise intrinsic to neural circuits. Slower, structural changes in random connectivity, consistent with rewiring and pruning processes occurring on developmental time scales, can further improve the efficiency and sparseness of the resulting neural representations. Our results merge insights from neuroanatomy, machine learning, and theoretical neuroscience to suggest random sparse connectivity as a key design principle for neuronal computation. -
Date:30ThursdayAugust 2018Lecture
PhD Defense Seminar- “The non-cell-autonomous function of p53 in the liver ״
More information Time 10:00 - 10:00Location Wolfson Building for Biological ResearchLecturer Meital Charni (Prof. Varda Rotter's lab) Organizer Department of Molecular Cell BiologyContact -
Date:30ThursdayAugust 2018Lecture
Dynamics of social representations in the prefrontal cortex and their alterations in mouse models of autism
More information Time 12:30 - 12:30Location Gerhard M.J. Schmidt Lecture HallLecturer Dana Rubi Levy (PhD Thesis Defense)
Ofer Yizhar Lab, Dept of Neurobiology, WISOrganizer Department of Brain SciencesContact Abstract Show full text abstract about The prefrontal cortex (PFC) plays an important role in regul...» The prefrontal cortex (PFC) plays an important role in regulating social functions in mammals, and impairments in this region have been linked with social dysfunction in psychiatric disorders. Yet little is known of how the PFC encodes social information and of how social representations may be altered in such disorders. Here, we show that neurons in the medial PFC (mPFC) of freely behaving mice preferentially respond to socially-relevant sensory cues. Population activity patterns in the mPFC differed considerably between social and nonsocial stimuli and underwent experience-dependent refinement. In Cntnap2 knockout mice, a genetic model of autism, both the categorization of sensory stimuli and the refinement of social representations were impaired. Noise levels in spontaneous population activity were higher in Cntnap2 mice, and correlated strongly with the degree to which social representations were disrupted. Our findings elucidate the encoding of social sensory cues in the mPFC, and provide an important link between altered prefrontal dynamics and autism-associated social dysfunction.
