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October 01, 2018
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Date:20ThursdayJune 2019Lecture
G-INCPM Special Guest Seminar - Dr. Vaclav Navratil, CEO & CTO, DIANA Biotechnologies, s.r.o.
More information Time 11:00 - 12:00Title "DIANA: new platform for protein detection and screening of protein ligands"Location Max and Lillian Candiotty BuildingOrganizer Department of Life Sciences Core FacilitiesContact Abstract Show full text abstract about Recently developed DIANA platform (DNA-linked Inhibitor ANti...» Recently developed DIANA platform (DNA-linked Inhibitor ANtibody Assay) is suitable for both ultrasensitive protein detection in in vitro diagnostics and for enzyme inhibitor or protein ligand screening in drug discovery. As its name suggests, we originally designed DIANA to detect enzymes and its inhibitors, but we later showed that it is well suited also for detection of receptors and its ligands, to screen for protein-protein interaction inhibitors and for detection of small molecules. DIANA overcomes the limitations of current state of the art methods, as it can detect zeptomole amounts of targets, has a linear range of up to six logs and is applicable to biological matrices.
Screening of chemical libraries is an important step in drug discovery, but it remains challenging for targets, which are difficult to express and purify, and current methods tend to produce false results. The sensitivity and selectivity of DIANA enables quantitative high-throughput screening of enzyme inhibitors, receptor ligands or inhibitors of protein-protein interactions with unpurified proteins. DIANA addresses also the remaining limitations of the current screening methods, as it allows high-throughput screening with high signal-to-noise ratio (Z’ factor > 0.9), sensitive hit discovery and ultralow rate of false positives (< 0.02%); while quantitatively determining the inhibition potency from a single well and requiring only picogram to nanogram quantities of potentially unpurified protein target (e.g. in human serum).
At DIANA Biotechnologies, a recently established spin-off from the Institute of Organic Chemistry and Biochemistry in Prague, we aim to fully exploit the potential of the platform and to become center for development of new diagnostics and drug discovery. We are building up infrastructure for screening and hit to lead conversion, including our own ~150,000 compound library, which we will screen for medicinally relevant targets, taking just one week per target. The most promising compounds will be optimized for potency, selectivity, physical properties, pharmacology profile and in vitro and in vivo efficacy, where DIANA-based high-throughput ADME pharmacology tests can also be applied.
In our talk, we will briefly summarize the assay protocol and its performance on model targets, as well as recent developments at DIANA Biotechnologies. We will discuss in more detail examples of current internal projects, mainly of the development of selectivity panels (example of inhibitors of human carbonic anhydrases) and of the first drug discovery project directed on influenza RNA polymerase and its different subunits.
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Date:20ThursdayJune 2019Lecture
Optoelectronic properties of surface-guided nanowires with controlled crystal structures and orientations
More information Time 11:00 - 12:00Location Helen and Milton A. Kimmelman BuildingLecturer Regev Ben Zvi
PHd Student, Dept. Materials and InterfacesOrganizer Department of Molecular Chemistry and Materials ScienceContact -
Date:20ThursdayJune 2019Colloquia
Physics Colloquium
More information Time 11:15 - 12:30Title Dark Matter direct detection at a crossroadsLocation Edna and K.B. Weissman Building of Physical SciencesLecturer Ranny Budnik
WISOrganizer Faculty of PhysicsContact Abstract Show full text abstract about The hunt for Dark Matter is reaching at a crossroads - after...» The hunt for Dark Matter is reaching at a crossroads - after two decades of incredible pace, where five orders of magnitude in parameter space were covered, no unambiguous signal has emerged for interaction between the alleged particles and our normal, baryonic matter. The next generation detectors, aiming at another order of magnitude sensitivity increase, are on the runway, and the question of what will be next takes interesting turns.
I will cover the evidence for the existence of Dark Matter, present the state of the art results from the XENON1T experiment, and play with some novel ideas for the next step, trying to move the lamppost to where Dark Matter may still stay hidden.
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Date:20ThursdayJune 2019Lecture
Late Middle Paleolithic site of Farah II: environmental and cultural contexts at the brinks of transition to the Upper Paleolithic in the southern Levant
More information Time 13:00 - 14:00Location Helen and Martin Kimmel Center for Archaeological ScienceLecturer Dr. Mae Goder, Dr. Lior Regev
Department of Bible, Archaeology and Ancient Near Eastern Studies, Ben-Gurion UniversityOrganizer Academic Educational ResearchContact -
Date:20ThursdayJune 2019Lecture
Charge scaling as a "free lunch" approach to electronic polarization in modelling aqueous electrolytes
More information Time 15:00 - 16:00Location Perlman Chemical Sciences BuildingLecturer Prof. Pavel Jungwirth
Institute of Chemistry, Academy of Sciences, PragueOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about In order to make modelling of aqueous electrolytes more accu...» In order to make modelling of aqueous electrolytes more accurate, we explore the recently suggested approach for effectively accounting for electronic polarization effects using ionic charge rescaling. Based on this approach we develop a new and accurate parametrization of ions. Comparison to neutron scattering and ab initio molecular dynamics simulations demonstrates that the charge scaling approach allows for an accurate description of concentrated aqueous salt solutions including divalent ions. The present approach should thus find broad use in efficient and accurate modelling of polyvalent ions in aqueous environments, such as those encountered in biological and technological applications. -
Date:23SundayJune 2019Lecture
Cell Penetration and Membrane Fusion: Two Sides of the Same Coin
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Prof. Pavel Jungwirth
Institute of Chemistry, Academy of Sciences, PragueOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Cell penetrating peptides have a unique potential for target...» Cell penetrating peptides have a unique potential for targeted drug delivery. While ATP-driven endocytosis is known to play a major role in their internalization, there has been also ample evidence for the importance of passive translocation for which the direct mechanism, where the peptide is thought to directly pass through the membrane via a temporary pore, has been widely advocated. In this talk, I will question this view and demonstrate that arginine-rich cell penetrating peptides can instead enter vesicles and cells by inducing multilamellarity and fusion, analogously to the action of calcium ions.
Allolio C., Magarkar A., Jurkiewiczf P., Baxová K., Javanainen M., Mason P.E., Sachl R., Cebecauer M., Hof M., Horinek D., Heinz V., Rachel R., Zieglerg C.M., Schrofel A., Jungwirth P.: Arginine-rich cell-penetrating peptides induce membrane multilamellarity and subsequently enter via formation of a fusion pore. Proceedings of the National Academy of Sciences USA 115 (2018) 11923.
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Date:23SundayJune 2019Lecture
A Forward Model for the Architecture of Inner Planetary Systems
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Eric Ford
Department of Astronomy and Astrophysics Penn StateOrganizer Department of Earth and Planetary SciencesContact -
Date:23SundayJune 2019Lecture
Strongly interacting phonons at finite temperature
More information Time 14:00 - 15:00Location Perlman Chemical Sciences BuildingLecturer Dr. Olle Hellman
Fritz Haber InstituteOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Thermal motions of atoms is an ever-present phenomenon in al...» Thermal motions of atoms is an ever-present phenomenon in all of solid state physics. Phonons, quanta of heat, is the quasiparticule used to describe thermal motion in solids. Under normal conditions phonons are the dominant mechanism that govern transport and the largest contribution to entropy. I want to understand how phonons evolve in time, temperature, and how they behave when they interact strongly with each other or other quasiparticles.
The inherent disorder in thermal motions makes theoretical predictions challenging. I will present methodological developments in finite temperature first principles simulations, specifically targeting strongly anharmonic systems. The method employs model Hamiltonians that explicitly depend on temperature. I will present applications pertaining to thermal conductivity, inelastic neutron spectra and phase stabilities, reproducing non-trivial temperature dependencies.
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Date:24MondayJune 2019Conference
test only
More information Time 08:00 - 09:00Location Jacob Ziskind BuildingChairperson testHomepage -
Date:24MondayJune 2019Conference
test only
More information Time 08:00 - 10:00Location Jacob Ziskind BuildingChairperson testHomepage -
Date:24MondayJune 2019Conference
Methods and Problems in BioImaging Workshop
More information Time 08:00 - 18:00Location The David Lopatie Conference CentreChairperson Ofra Golani -
Date:24MondayJune 2019Conference
Methods and Problems in BioImaging Workshop
More information Time 08:00 - 18:00Location The David Lopatie Conference CentreChairperson Ofra Golani -
Date:24MondayJune 2019Lecture
Virus Structure: How Structural Biology Can Inform Function and Therapy
More information Time 11:00 - 12:30Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. David Stuart
MRC Professor of Structural Biology, Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford,Organizer Department of Chemical and Structural BiologyContact -
Date:24MondayJune 2019Lecture
Chemical and Biological Physics Dept Seminar
More information Time 11:00 - 12:00Title Addressing the protocol dependence of glass plasticity and yieldingLocation Perlman Chemical Sciences BuildingLecturer Corrado Rainone, Amiram Debesh
Institute of Physics, University of AmsterdamOrganizer Department of Chemical and Biological PhysicsContact -
Date:24MondayJune 2019Lecture
IMM Guest seminar- Prof. Ofer Mandelboim will lecture on "TIGIT and its cellular and bacterial ligands: novel checkpoints for cancer immune therapy."
More information Time 13:00 - 14:00Location Wolfson Building for Biological ResearchLecturer Prof. Ofer Mandelboim
Lautenberg Center for Immunology and cancer research, the Hebrew University Hadassha Medical School, Jerusalem, Israel.Organizer Department of Systems ImmunologyContact -
Date:25TuesdayJune 201927ThursdayJune 2019Conference
The epitranscriptome - 2nd symposium on RNA modifications
More information Time 08:00 - 08:00Location The David Lopatie Conference CentreChairperson Schraga SchwartzHomepage -
Date:25TuesdayJune 2019Lecture
Principles of endocrine circuits in human physiology
More information Time 09:00 - 10:00Title Stem Cells, Regeneration and Aging seminarLocation Max and Lillian Candiotty BuildingLecturer Prof. Uri Alon Organizer Department of Immunology and Regenerative BiologyContact -
Date:25TuesdayJune 2019Lecture
Interactions and function of a protein during its own translation
More information Time 10:00 - 10:15Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Lulu Winer
Members - Dept. of Biomolecular Sciences-WISOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about The conserved signal recognition particle (SRP) system is es...» The conserved signal recognition particle (SRP) system is essential for the biogenesis of integral membrane proteins (IMPs). The E. coli membrane associated SRP-receptor FtsY is a key player in the SRP system, although very little is known about its targeting and association with the membrane. Previous work done in our lab showed that FtsY targeting to the membrane is of a co-translational nature; during its translation, a specific domain emerges out of the ribosome and serves as the signal for membrane localization. This domain was characterized both functionally and structurally, but the manner by which this entire ribosome-nascent chain complex targets the membrane remains mostly unclear. In order to shed light on this mechanism, we have developed a co-translational and in-vivo site-specific crosslinking system. Using ribosome stalling-sequence and amber suppression, we are trying to identify direct co-translational protein-protein interactions involved in the membrane docking event of FtsY. -
Date:25TuesdayJune 2019Lecture
To be announced
More information Time 10:15 - 10:30Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Yael Bar-On
Department of Biomolecular Sciences-WISOrganizer Department of Biomolecular SciencesContact -
Date:25TuesdayJune 2019Lecture
To be announced
More information Time 10:30 - 11:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Dr. Anat Bahat
Department of Biomolecular Sciences-WISOrganizer Department of Biomolecular SciencesContact
