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October 01, 2009
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Date:14ThursdayJune 2012Lecture
"Mass-Informatics: from Peaks to Pathways"
More information Time 14:00 - 15:00Title New technologies in high-throughput proteomics has led to the need for developing new bioinformatic tools. The field of mass-informatics will be introduced, its scope will be defined and a variety of web-based tools designed to support research in this exciting and relatively underdeveloped branch of bioinformatics will be demonstrated. Re-analysis (“second-pass science”) will be emphasized, applied particularly to cancer datasets.Location Ullmann Building of Life SciencesLecturer Manor Askenazi
Lead Bioinformatics Engineer, Blais Proteomics Center, Harvard Medical SchoolOrganizer Department of Life Sciences Core FacilitiesContact -
Date:14ThursdayJune 2012Cultural Events
The Tzemed Reim duo, together with Habrera Hativeet
More information Time 20:30 - 20:30Location Michael Sela AuditoriumContact -
Date:16SaturdayJune 2012Cultural Events
Moroccan Comedy Entertainment
More information Time 21:00 - 21:00Title "To the Nuthouse"Location Michael Sela AuditoriumContact -
Date:17SundayJune 2012Lecture
Inertial instability of oceanic submesoscale vortices: linear analysis, marginal stability criterion and laboratory experiments
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Ayah Lazar
Department of geophysics and planetary sciences Tel Aviv UniversityOrganizer Department of Earth and Planetary SciencesContact Abstract Show full text abstract about Inertial instability is a possible mechanism for vertical mi...» Inertial instability is a possible mechanism for vertical mixing in the submeso-scale ocean, which could transport nutrient rich waters from the deep and effect primary production. The stability of axisymmetric oceanic-like vortices to inertial perturbations is investigated by means of linear stability analysis, taking into account the thickness and the stratification of the thermocline, as well as the vertical eddy viscosity. Numerical analysis reveals that the instability is not sensitive to the vorticity profile if the intensity of the vortex is characterized by the vortex Rossby number (instead of the local normalized vorticity). This allows extending our analytical solutions for the Rankine vortex to a wide variety of oceanic cases, including results such as the analytic dispersion relation, and the marginal stability criterion. This criterion suits oceanic conditions better than the widely used generalized Rayleigh criterion, which is only valid for non-dissipative and non-stratified eddies. Comparison with literature oceanographic data shows that our criterion allows for cases that seem to contradict the common oceanographic hypothesis for inertial instability. For instance, intense submesoscale anticyclones may be stable even with a core region of negative absolute vorticity. We corroborate our findings with large-scale laboratory experiments, performed at the LEGI-Coriolis platform, where we also find a "signature" of the instability on the mean-flow, which could be used in future oceanographic measurements. -
Date:17SundayJune 2012Lecture
Parallel, non-convergent, interactions between separate cortical loci underlie perceptual unity: implications for a new view of object recognition
More information Time 12:30 - 12:30Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Moshe Gur
Dept of Biomedical Engineering, Technion, HaifaOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Any physical device, including computers, when comparing A t...» Any physical device, including computers, when comparing A to B, must send the information to point C. Explanations of brain processing take such a convergence for granted thus generating models relying on increasingly converging hierarchical streams. Such models, however, consistently fail to explain many perceptual phenomena. To see whether the brain, at times, can compare (integrate, process) events that take place at different loci without sending the information to a common target, I performed experiments in three modalities, somato-sensory, auditory, and visual, where 2 different loci at the primary cortex were stimulated. Subjects were able to integrate inputs in time and space affecting small separate cortical loci. The ability to correlate activity between loci was independent of cortical distance up to 2-4 cm. Given the organization of sensory cortex where localized responses in primary cortex do not interact while convergence in downstream areas results in loss of individual stimulus identity and in decreasing selectivity to elementary stimuli, those results cannot be explained by conventional convergence models. We must thus assume a non-converging mechanism whereby two (or more) activated cortical loci can be integrated without sending information via axons into another downstream integrating site. Once we allow for such a non-converging mechanism, many perceptual phenomena can be viewed differently. Object recognition and representation is such a phenomenon that, I suggest, does not result from hierarchical convergence of cells with ever-increasing feature selectivity but rather from parallel interactions between various visual and non-visual areas. If my hypothesis of the brain ability to relate activity taking place at separate loci without using convergence-by-wires is correct, it implies that the brain can use heretofore unconsidered (unknown?) parallel processing and that conventional models, including computer programs, would not be able to capture many brain processes.
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Date:17SundayJune 2012Lecture
When cells are inactive in DNA synthesis, viruses R2
More information Time 13:00 - 13:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Inna Ricardo-Lax
Yosef Shaul's group, Dept. of Molecular GeneticsOrganizer Department of Molecular GeneticsContact -
Date:17SundayJune 2012Cultural Events
The Andalusian Ensemble
More information Time 20:30 - 20:30Title "From Andalusia with Love"Location Michael Sela AuditoriumContact -
Date:18MondayJune 2012Lecture
A Landscape of Driver Mutations in Melanoma
More information Time 10:00 - 11:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Eran Hodis
Garraway Lab Broad InstituteHomepage Contact Abstract Show full text abstract about Despite recent insights into melanoma genetics, systematic s...» Despite recent insights into melanoma genetics, systematic surveys for driver mutations are challenged by an abundance of passenger mutations caused by carcinogenic ultraviolet (UV) light exposure. We developed a permutation-based framework to address this challenge, employing mutation data from intronic sequences to control for passenger mutational load on a per-gene basis. Analysis of large-scale melanoma exome data by this approach discovered 6 novel melanoma genes, 3 of which harbored recurrent and potentially targetable mutations. Integration with chromosomal copy number data contextualized the landscape of driver mutations we defined and provided new oncogenic insights in BRAF- and NRAS-driven melanoma and a subset without known NRAS/BRAF mutations. The landscape also clarified a mutational basis for RB and p53 pathway deregulation in this malignancy. Finally, the spectrum of driver mutations provides unequivocal genomic evidence for a direct mutagenic role of UV in melanoma pathogenesis.
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Date:18MondayJune 2012Lecture
Brauer-Grothendieck groups and Brauer-Manin sets
More information Time 11:00 - 11:00Location Jacob Ziskind BuildingLecturer Yuri Zarhin
Pennsylvania State UniversityOrganizer Faculty of Mathematics and Computer ScienceContact -
Date:18MondayJune 2012Lecture
Feedbacks linking growth and proliferation in human cancer cells: application of Ergodic Rate Analysis
More information Time 13:30 - 13:30Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Dr. Ran Kafri
Systems Biology Dept., Harvard Medical School, Boston MAOrganizer Department of Molecular GeneticsContact -
Date:18MondayJune 2012Lecture
The role of membrane tension in cell motility
More information Time 14:00 - 15:30Location The David Lopatie Hall of Graduate StudiesLecturer Prof. Kinneret Keren
Physics Department, TechnionOrganizer Department of Chemical and Biological PhysicsContact -
Date:18MondayJune 2012Lecture
Gradual Small-Bias Sample Spaces
More information Time 14:30 - 14:30Location Jacob Ziskind BuildingLecturer Gil Cohen
Organizer Faculty of Mathematics and Computer ScienceContact -
Date:18MondayJune 2012Cultural Events
"The Pride of Rehovot"
More information Time 20:30 - 20:30Title Rehovot Classic OrchestraLocation Michael Sela AuditoriumContact -
Date:19TuesdayJune 2012Lecture
NK-mediated immune surveillance
More information Time All dayLocation Wolfson Building for Biological ResearchLecturer Adi Sagiv Organizer Department of Molecular Cell BiologyContact -
Date:19TuesdayJune 2012Lecture
From mass spectrometry to cell biology: Identifying the adhesion related Arp2/3-Vinculin complex.
More information Time 10:00 - 10:00Title Department of Biological Chemistry - WISLocation Wolfson Building for Biological ResearchLecturer Dror Chorev Organizer Department of Biomolecular SciencesContact -
Date:19TuesdayJune 2012Lecture
Using Network Algorithms to Integrate "Omic" Data and Reveal Disease Mechanisms
More information Time 10:00 - 10:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Ernest Fraenkel
Massachusetts Institute of TechnologyOrganizer Department of Physics of Complex SystemsContact Abstract Show full text abstract about Proteomic technologies, next-generation sequencing and RNAi ...» Proteomic technologies, next-generation sequencing and RNAi screens are providing increasingly detailed descriptions of the molecular changes that occur in diseases. However, it is difficult to assemble these data into a coherent picture that could lead to new therapeutic insights for several reasons. Despite their power, each of these methods still only captures a small fraction of the cellular response. Moreover, when different assays are applied to the same problem, they often provide apparently conflicting answers. We have developed powerful new approaches to integrate these data to identify small, functionally coherent networks that underlie cellular behavior. I will show that these methods suggest novel therapeutic strategies for the brain tumor glioblastoma multiforme. -
Date:19TuesdayJune 2012Lecture
"Studying endoderm development by a proteomics method of fractionating heterogeneous populations"
More information Time 10:30 - 11:00Location Wolfson Building for Biological ResearchLecturer Revital Sharivkin
Department of Biological Chemistry - WISOrganizer Department of Biomolecular SciencesContact -
Date:19TuesdayJune 2012Lecture
MECHANICS AT THE NANO SCALE
More information Time 10:30 - 12:00Location Neve ShalomLecturer RON LIFSHITZ
RAYMOND AND BEVERLY SACKLER SCHOOL OF PHYSICS AND ASTRONOMY TEL AVIV UNIVERSITYOrganizer Department of Particle Physics and AstrophysicsContact Abstract Show full text abstract about Vigorous research in nanoscience and nanotechnology is expec...» Vigorous research in nanoscience and nanotechnology is expected to lead to exciting new applications, but considering that the first person to envision science at the nano scale was one of the greatest theoretical physicists of the last century, one should wonder whether we can expect to see any new physics emerging from this activity as well. I will attempt to answer this question by reviewing some exciting developments in the field of nanomechanics, emphasizing my particular interests, ranging from classical nonlinear dynamics, through mesoscopic physics of phonons, to the ultimate limit of QEM (quantum electromechanics). -
Date:19TuesdayJune 2012Lecture
Asymmetric Grow-Up Equations and their Non-Compact Global Attractors
More information Time 11:00 - 11:00Location Jacob Ziskind BuildingLecturer Nitsan Ben Gal
Organizer Faculty of Mathematics and Computer ScienceContact -
Date:19TuesdayJune 2012Lecture
"Selenocysteine as a tool to study protein chemistry"
More information Time 11:00 - 11:00Title Organic Chemistry - Departmental SeminarLocation Helen and Milton A. Kimmelman BuildingLecturer Dr. Norman Metanis
Laboratory of Organic Chemistry, ETH Zürich, SwitzerlandOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Abstract. Selenocysteine is the 21st encoded amino acid, ...» Abstract.
Selenocysteine is the 21st encoded amino acid, found in several selenoproteins, most of which are redox selenoenzymes. Its resemblance to cysteine enabled its use for protein chemical synthesis and mechanistic studies. As they belong to the same group of elements in the periodic table, sulfur and selenium share many features including similar size, electronegativity and major oxidation states. However they differ in other properties, for example, selenium compounds are easier to oxidize and show greater electrophilic character. The selenium atom is also more polarizable than sulfur, so selenols are softer nucleophiles than thiols. Because selenols are substantially more acidic (ΔpKa ~3), selenocysteine is ionized at physiological pH, further enhancing its reactivity relative to cysteine. These properties make selenocysteine a valuable building block for constructing peptides and proteins with novel properties and as a tool for protein synthesis and folding studies. For example, native chemical ligation at selenocysteine followed by selective deselenization will enable chemical synthesis of proteins without protecting groups on cysteine residues. Additionally, targeted insertion of a non-native diselenide cross-link into a cysteine-rich protein can be exploited to direct the early stages of oxidative folding so as to avoid accumulation of unproductive intermediates that limit folding efficiency. This novel strategy could facilitate the production of many difficult-to-fold peptides and proteins. Results from
