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June 01-30, 2018
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Date:21ThursdayJune 2018Lecture
New era in cryo electron microscopy reflected in studies of a bacteriophage phage at near atomic resolution
More information Time 11:00 - 12:00Location Helen and Milton A. Kimmelman BuildingLecturer Prof. Elena Orlova
Institute of Structural and Molecular Biology, Birkbeck College, LondonOrganizer Department of Chemical and Structural BiologyContact Abstract Show full text abstract about During the last decade electron microscopy become a powerful...» During the last decade electron microscopy become a powerful tool in structural studies of large biological complexes. Cryo electron microscopy enabled us to reveal molecular dynamics of the complexes by analysis of samples in solution. This was made possible by long-standing efforts in sample preparations (cryo-EM imaging), in development of hardware, automation in data collection, methods in image analysis and, eventually, interpretation of results. Here I would like to share my experience in using these approaches in analysis of structural organisation of bacteriophages exemplified by the SPP1 phage. It is important to highlight critical steps in obtaining near-atomic resolution structures of the biocomplexes. We have obtained high resolution structures of main components of the phage such as a capsid and its nano-motor engaged into packaging of genome and its release. -
Date:21ThursdayJune 2018Colloquia
Multiple Scale Structures:From Faraday Waves to Soft Quasicrystals
More information Time 11:15 - 12:30Location Edna and K.B. Weissman Building of Physical SciencesLecturer Ron Lifshitz
Raymond and Beverly Sackler School of Physics & Astronomy Tel Aviv UniversityOrganizer Faculty of PhysicsContact Abstract Show full text abstract about For many years, quasicrystals were observed only as solid-st...» For many years, quasicrystals were observed only as solid-state metallic alloys, yet current research is actively exploring their formation in a variety of soft materials, including systems of macromolecules, nanoparticles, and colloids. Much effort is being invested in understanding the thermodynamic properties of these soft-matter quasicrystals in order to predict and possibly control the structures that form, and hopefully to shed light on the broader, yet unresolved, general questions of quasicrystal formation and stability. I shall give an explanation for the stability of certain soft-matter quasicrystals---inspired by the physics of a different phenomenon known as Faraday waves---and provide a recipe for designing pair potentials that yield so-called -
Date:21ThursdayJune 2018Lecture
What the nose tells the brain
More information Time 12:30 - 13:30Lecturer Prof. Dmitry Rinberg
Dept of Neuroscience & Physiology NYU Neuroscience InstituteOrganizer Department of Brain SciencesContact Abstract Show full text abstract about All living organisms extract chemical information from the s...» All living organisms extract chemical information from the surrounding world. We know a lot about the genetic, cellular, and anatomical organization of our sense of smell, which has similar organization from insects to mammals. However, we still do not know basic principles of odor coding, organization of the odor parameter space, and how odors are represented in the brain. In humans, odors are sensed by millions of receptor cells using ~350 types of receptor cells. Flies have 60 and mice ~1000 receptor types. An odor evokes a concentration-dependent spatial-temporal pattern of receptor cell activity. We are presented with an immensely complex combinatorial computation. And the central question of my research is to understand how these patterns are read by the brain.
In this talk I will present our recent results on testing a novel model for concentration-invariant odor coding based on temporal ranking of receptor. And then I will discuss our attempt to build a theory of odor space representation in the brain based on this model.
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Date:21ThursdayJune 2018Lecture
Pelletron meeting - by invitation only
More information Time 16:00 - 16:00Contact -
Date:24SundayJune 2018Lecture
Revisiting Atlantic-European weather regimes
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Christian M. Grams
Institute of Meteorology and Climate Research (IMK-TRO), Karlsruhe Institute of Technology (KIT), GermanyOrganizer Department of Earth and Planetary SciencesContact Abstract Show full text abstract about The large-scale midlatitude flow is dominated by Rossby wave...» The large-scale midlatitude flow is dominated by Rossby wave activity along the upper-level midlatitude wave guide and jet stream. This activity often occurs in preferred quasi-stationary, persistent, and recurrent states, so-called weather regimes (e.g. Vautard, 1990). Many of these regimes are dominated by a blocking anticyclone. In the Atlantic-European region, weather regimes explain most of the atmospheric variability on sub-seasonal time scales. From a forecasting perspective, the onset, persistence, and transition of weather regimes present a severe challenge in current numerical weather prediction models (Ferranti et al., 2015).
In this presentation Atlantic-European weather regimes are revisited in order to elucidate their linkage to the eddy-driven jet, atmospheric blocking, and the physical and dynamical processes governing their life cycles. For the latter, the focus is on air mass transport into the upper troposphere through "diabatic outflow" driven by latent heat release in ascending air streams associated with synoptic-scale weather systems (e.g. Grams and Archambault 2016). Next to dry dynamics, this process has recently been shown to be of first-order in blocking onset and maintenance (Pfahl et al. 2015). Challenges in predictability of weather regime life cycles imposed by diabatic outflow are exemplarily demonstrated for a recent forecast bust. We further briefly discuss the modulation of weather regime life cycles by climate modes on sub-seasonal time scales such as the stratosphere and Madden-Julian Oscillation.
Finally, the role of weather regimes in extreme weather and the relevance of the weather regime paradigm for socio-economic activities are demonstrated.
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Date:24SundayJune 2018Lecture
MCB Special Guest Seminar
More information Time 12:00 - 12:00Title “How to Enhance Sex”Location Wolfson Building for Biological ResearchLecturer Dr. Nitzan Gonen
The Francis Crick Institute, London, UKOrganizer Department of Molecular Cell BiologyContact -
Date:24SundayJune 2018Lecture
Molecular Genetics Departmental Seminars 2017-2018
More information Time 13:00 - 13:00Title “Modeling Autism: Maternal Immune Activation Alters the Development of the Embryonic Brain”Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Lihi Ben-Reuven Organizer Department of Molecular GeneticsContact -
Date:26TuesdayJune 2018Lecture
The first protein: short, simple and functional
More information Time 10:00 - 10:30Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Dr. Dragana Despotovic
Dept. of Biomolecular Sciences-WISOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Researchers hypothesized that the first protein domains aros...» Researchers hypothesized that the first protein domains arose by joining and swapping short lengths of proteins called peptides that had emerged before there were living cells on earth – a time that is often called the “RNA world”. However, the properties of the first proteins remain poorly understood, in part because of the difficulty in studying events that happened billions of years ago.
Combining bioinformatics, structural biology and experimental approaches we developed a model system for the first proteins in order to understand the functional and structural transitions that drive protein emergence and evolution.
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Date:26TuesdayJune 2018Lecture
"Relationship between Phosphatidylcholine synthesis and Autophagy".
More information Time 10:30 - 11:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Alexandra (Sasha) Polyansky
Dept. of Biomolecular Sciences-WISOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Autophagy is a cellular catabolic pathway in eukaryotes, res...» Autophagy is a cellular catabolic pathway in eukaryotes, responsible for the degradation of organelles and large protein aggregates in the vacuole/lysosome of the cell. It’s induced under various stress conditions, such as amino acid starvation, hypoxia, and oxidative stress. The process starts with the formation of phagophore, a cup shaped vesicle, creating a unique double membrane structure termed the autophagosome. Phospholipids play key roles from phagophore nucleation to autophagosome maturation. While the roles of phosphatidylethanolamine (PE) and phosphatidylinositol 3-phosphate (PI3P) are well-established, structural and regulatory implications of other phospholipids remain obscure. Here we explore the role of phosphatidylcholine (PC) in autophagy in the yeast system. The primary biosynthetic pathway of PC in this organism is the conversion of PE to PC by Cho2 and Opi3. We found that PC synthesis is important for autophagy, as the delivery of substrates to the vacuole was impaired in Δopi3 and ∆cho2 cells.
We show for the first time, using quantitative lipidomics, that de novo synthesis of PC during starvation, by a secondary choline-dependent pathway, restores autophagy in Δopi3 cells.
Our findings therefore offer new implications of phospholipid metabolism in autophagy.
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Date:26TuesdayJune 2018Lecture
The role of latent heating for atmospheric blocking: climatology and dynamics
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Daniel Steinfeld
ETH Zürich, SwitzerlandOrganizer Department of Earth and Planetary SciencesContact Abstract Show full text abstract about Moist processes, and in particular the release of latent hea...» Moist processes, and in particular the release of latent heat in ascending airstreams, can modify the mid-latitude flow and contribute to the formation of prolonged circulation anomalies such as atmospheric blocking. Blocking represents a challenge to numerical weather and climate forecasting, because it may lead to high impact weather in a situation of increased forecast uncertainty. The causal link between latent heating and blocking is still not well understood. In this study, we explore the effect of latent heating in ascending airstreams on the characteristics of atmospheric blocking using a combination of climatological analysis and modelling approaches. The results of this study illustrate how the physics within ascending airstreams play a crucial role in the formation of blocking anticyclones and in the upper-level wave dynamics in general. -
Date:26TuesdayJune 2018Lecture
Students Seminar
More information Time 11:15 - 12:30Location Wolfson Building for Biological ResearchLecturer Dr. Ravid Straussman's lab Organizer Department of Molecular Cell BiologyContact -
Date:26TuesdayJune 2018Lecture
FOOD EVOLUTION - FEAST ON FACTS
More information Time 11:30 - 12:30Title Screening of this documentary filmLocation Nella and Leon Benoziyo Building for Biological SciencesLecturer Narrated by NEIL DeGRASSE TYSON Organizer Department of Plant and Environmental SciencesHomepage Contact Abstract Show full text abstract about FOOD EVOLUTION is set amidst a brutally polarized debate mar...» FOOD EVOLUTION is set amidst a brutally polarized debate marked by fear, distrust and confusion: the controversy surrounding GMOs and food. -
Date:26TuesdayJune 2018Lecture
Neural networks mapping actions to their sensory consequences
More information Time 12:30 - 12:30Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Roy Mukamel
School of Psychological Sciences and Sagol School of Neuroscience Tel-Aviv UniversityOrganizer Department of Brain SciencesContact Abstract Show full text abstract about A specific motor action can lead to different sensory conseq...» A specific motor action can lead to different sensory consequences, and a particular sensory consequence can be achieved by different motor actions. This non-unique mapping between actions and sensory consequences is context dependent and requires learning in order to optimize behavior. During my talk, I will describe behavioral and neuroimaging studies in humans, in which we examined how actions modulate perception and how perception can lead to motor skill learning even in the absence of voluntary movement. Manipulating the link between actions and their sensory consequences by using virtual reality, we explore various training techniques to facilitate learning in healthy subjects and rehabilitation in patients with hemiparesis due to neurological origin. -
Date:26TuesdayJune 2018Lecture
Structural view of the disordered multi-tasker WIP and its interaction network in human T cells
More information Time 14:00 - 15:00Location Helen and Milton A. Kimmelman BuildingLecturer Prof. Jordan Chill
Dept. of Chemistry, BIUOrganizer Department of Chemical and Structural BiologyContact Abstract Show full text abstract about WASP-Interacting Protein (WIP) is a multifunctional key part...» WASP-Interacting Protein (WIP) is a multifunctional key participant in mediating actin-related cytoskeletal changes in human T cells. WIP is also an intrinsically disordered protein (IDP), lacking any significant secondary or tertiary structure across its 503 residues, and thus defies the ordinarily reliable structure-function paradigm. Our research focuses on how interactions between this ‘hub’ multi-tasker and its various structured binding partners delicately control T cell destiny, in particular the role played by disorder-to-order transitions. Three such critical protein-protein contacts involve the WIP N-terminal domain (with actin), a proline-rich central segment (with cortactin) and the C-terminal domain (with Wiskott-Aldrich syndrome protein, WASP). The first two are of intermediate binding energy (KD ~ 50-3000 nM) and transiently modulate WIP interactions with the actin polymerization machinery. In contrast, the latter forms a tight complex with WASP and inhibits both its activity and eventual degradation in a phosphorylation-dependent manner, explaining why the hereditary Wiskott-Aldrich syndrome immunodeficiency results from WASP mutants unable to bind WIP.
As an IDP, WIP ‘structure’ is essentially an ensemble of multiple conformations contributing to function, and this complexity gives solution NMR – armed with new IDP-optimized methodologies – unrivaled insight into how IDPs exert their biological influence. We established that transient structure in free WIPN and WIPC echoes their bound conformations, uncovering novel binding epitopes in the process. We also observed subtle ensemble shifts induced by environmental factors, such as temperature, denaturant or crowding agents, revealing the biophysics governing WIP behavior in the cellular environment. We further investigated the largest conformational change, experienced by WIPC upon binding to WASP, by determining the contribution of various WIP epitopes to complex affinity, and eventually the structure of the WIP-WASP complex. Finally, we offer an unexpected structural explanation for phosphorylation-induced dissociation of this complex that may explain how this phospho-switch controls WASP degradation. Taken together our results provide a comprehensive map of WIP structure and dynamics and how these affect its interaction with T cell binding partners, and highlight the great impact of high-resolution NMR studies upon the field of biologically active unstructured proteins.
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Date:27WednesdayJune 201828ThursdayJune 2018Conference
Frontiers in Laser Sciences
More information Time 08:00 - 08:00Location The David Lopatie Conference CentreChairperson Victor Armand MalkaHomepage -
Date:27WednesdayJune 2018Lecture
Hyperion Mass Cytometry Imaging System
More information Time 09:00 - 11:00Location Max and Lillian Candiotty BuildingLecturer Dr. Roberto Spada
Field Application Specialist, Proteomics. Fluidigm Inc.Organizer Department of Life Sciences Core FacilitiesContact -
Date:28ThursdayJune 2018Colloquia
The Information Theory of Deep Neural Networks: The statistical physics perspective
More information Time 11:15 - 12:30Location Edna and K.B. Weissman Building of Physical SciencesLecturer Naftali Tishby
Hebrew University of JerusalemOrganizer Faculty of PhysicsContact Abstract Show full text abstract about The surprising success of learning with deep neural networks...» The surprising success of learning with deep neural networks poses two fundamental challenges: understanding why these networks work so well and what this success tells us about the nature of intelligence and our biological brain. Our recent Information Theory of Deep Learning shows that large deep networks achieve the optimal tradeoff between training size and accuracy, and that this optimality is achieved through the noise in the learning process.
In this talk, I will focus on the statistical physics aspects of our theory and the interaction between the stochastic dynamics of the training algorithm (Stochastic Gradient Descent) and the phase structure of the Information Bottleneck problem. Specifically, I will describe the connections between the phase transition and the final location and representation of the hidden layers, and the role of these phase transitions in determining the weights of the network.
Based partly on joint works with Ravid Shwartz-Ziv, Noga Zaslavsky, and Shlomi Agmon.
