all

Uri Alon

Google Scholar Profile of Uri Alon

(3000)

Google Scholar Profile
Wang S., Li K., Pickholz E., Dobie R., Matchett K. P., Henderson N. C., Carrico C., Driver I., Borch Jensen M., Chen L., Petitjean M., Bhattacharya D., Fiel M. I., Liu X., Kisseleva T., Alon U., Adler M., Medzhitov R. & Friedman S. L.

An Autocrine Signaling Circuit in Hepatic Stellate Cells Underlies Advanced Fibrosis in Nonalcoholic Steatohepatitis

Science Translational Medicine , 15:eadd3949 (2023)
Bar A., Karin O., Mayo A., Ben-Zvi D. & Alon U.

Rules For Body Fat Interventions Based on an Operating Point Mechanism

Iscience , 26:106047 (2023)
Milo T., Kohanim Y. K., Toledano Y. & Alon U.

Autoimmune Thyroid Diseases as a Cost of Physiological Autoimmune Surveillance

Trends in Immunology , (2023)
Zilkha N., Chuartzman S. G., Sofer Y., Pen Y., Cum M., Mayo A., Alon U. & Kimchi T.

Sex-Dependent Control of Pheromones on Social Organization Within Groups of Wild House Mice

Current Biology , (2023)
Landsberger T., Amit I. & Alon U.

Geroprotective Interventions Converge on Gene Expression Programs of Reduced Inflammation and Restored Fatty Acid Metabolism

Geroscience , (2023)
Mayer S., Milo T., Isaacson A., Halperin C., Miyara S., Stein Y., Lior C., Pevsner-Fischer M., Tzahor E., Mayo A., Alon U. & Scherz-Shouval R.

The Tumor Microenvironment Shows a Hierarchy of Cell-Cell Interactions Dominated by Fibroblasts

Nature Communications , 14:5810 (2023)
Lebel Y., Milo T., Bar A., Mayo A. & Alon U.

Excitable Dynamics of Flares and Relapses in Autoimmune Diseases

Iscience , 26:108084 (2023)
Korem Kohanim Y., Milo T., Raz M., Karin O., Bar A., Mayo A., Mendelson Cohen N., Toledano Y. & Alon U.

Dynamics of Thyroid Diseases and Thyroid-Axis Gland Masses

Molecular Systems Biology , 18:e10919 (2022)
Karin O. & Alon U.

The Dopamine Circuit as a Reward-Taxis Navigation System

Plos Computational Biology , 18:e1010340 (2022)
Karin O. & Alon U.

The Dopamine Circuit as a Reward-Taxis Navigation System

Plos Computational Biology , 18:e1010340 (2022)
Adler M., Tendler A., Hausser J., Korem Y., Szekely P., Bossel N., Hart Y., Karin O., Mayo A. & Alon U.

Controls For Phylogeny and Robust Analysis in Pareto Task Inference

Molecular Biology and Evolution , (2022)
McInnis M. G., Andreassen O. A., Andreazza A. C., Alon U., Berk M., Brister T., Burdick K. E., Cui D., Frye M., Leboyer M., Mitchell P. B., Merikangas K., Nierenberg A. A., Nurnberger J., Pham D., Vieta E., Yatham L. N. & Young A. H.

Strategies and Foundations For Scientific Discovery in Longitudinal Studies of Bipolar Disorder

Bipolar Disorders , (2022)
Shilo M., Mayo A. & Alon U.

A Mechanism For Ovulation Number Control

Frontiers in Endocrinology (Lausanne) , (2022)
Tendler A., Bar A., Mendelsohn-cohen N., Karin O., Korem Kohanim Y., Maimon L., Milo T., Raz M., Mayo A., Tanay A. & Alon U.

Hormone Seasonality in Medical Records Suggests Circannual Endocrine Circuits

Proceedings of the National Academy of Sciences , 118:2003926118 (2021)
Katzir I., Adler M., Karin O., Mendelsohn-Cohen N., Mayo A. & Alon U.

Senescent Cells and the Incidence of Age-Related Diseases

Aging Cell , 20:13314 (2021)
Karin O., Raz M. & Alon U.

An Opponent Process For Alcohol Addiction Based on Changes in Endocrine Gland Mass

Iscience , 24:102127 (2021)
Karin O. & Alon U.

Senescent Cell Accumulation Mechanisms Inferred From Parabiosis

Geroscience , (2021)
Shimshoni E., Adir I., Afik R., Solomonov I., Shenoy A., Adler M., Puricelli L., Sabino F., Savickas S., Mouhadeb O., Gluck N., Fishman S., Werner L., Salame T., Shouval D. S., Varol C., auf dem Keller U., Podestà A., Geiger T., Milani P., Alon U. & Sagi I.

Distinct Extracellular–Matrix Remodeling Events Precede Symptoms of Inflammation

Matrix Biology , (2021)
Friedman G., Levi-Galibov O., David E., Bornstein C., Giladi A., Dadiani M., Mayo A., Halperin C., Pevsner-Fischer M., Lavon H., Mayer S., Nevo R., Stein Y., Balint-Lahat N., Barshack I., Ali H. R., Caldas C., Nili-Gal-Yam E., Alon U., Amit I. & Scherz-Shouval R.

Cancer-Associated Fibroblast Compositions Change With Breast Cancer Progression Linking the Ratio of S100a4(+) and Pdpn+ Cafs to Clinical Outcome

Nature Cancer , (2020)
Maimon L., Milo T., Moyal R. S., Mayo A., Danon T., Bren A. & Alon U.

Timescales of Human Hair Cortisol Dynamics

Iscience , 23:101501 (2020)
Hausser J. & Alon U.

Tumour Heterogeneity and the Evolutionary Trade-Offs of Cancer

Nature Reviews Cancer , (2020)
Adler M., Mayo A., Zhou X., Franklin R. A., Meizlish M. L., Medzhitov R., Kallenberger S. M. & Alon U.

Principles of Cell Circuits For Tissue Repair and Fibrosis

Iscience , 23:100841 (2020)
Hart Y., Goldberg H., Striem-Amit E., Mayo A. E., Noy L. & Alon U.

Correction: Creative Exploration as a Scale-Invariant Search on a Meaning Landscape (Vol 9, 5411, 2018)

Nature Communications , 11:1100 (2020)
Kohanim Y. K., Tendler A., Mayo A., Friedman N. & Alon U.

Endocrine Autoimmune Disease as a Fragility of Immune Surveillance Against Hypersecreting Mutants

Immunity , (2020)
Karin O., Raz M., Tendler A., Bar A., Kohanim Y. K., Milo T. & Alon U.

A New Model For the Hpa Axis Explains Dysregulation of Stress Hormones on the Timescale of Weeks

Molecular Systems Biology , 16:209510 (2020)
Alon U.

An Introduction to Systems Biology: Design Principles of Biological Circuits

, (2019)
Hausser J., Mayo A., Keren L. & Alon U.

Central Dogma Rates and the Trade-Off Between Precision and Economy in Gene Expression

Nature Communications , 10:68 (2019)
Adler M., Kohanim Y. K., Tendler A., Mayo A. & Alon U.

Continuum of Gene-Expression Profiles Provides Spatial Division of Labor Within a Differentiated Cell Type

Cell Systems , (2019)
Katzir I., Cokol M., Aldridge B. B. & Alon U.

Prediction of Ultra-High-Order Antibiotic Combinations Based on Pairwise Interactions

Plos Computational Biology , 15:1006774 (2019)
Alon U., Pundak G. & Sainath T. N.

Contextual Speech Recognition With Difficult Negative Training Examples

, (2019)
Tendler A., Zimmer A., Mayo A. & Alon U.

Noise-Precision Tradeoff in Predicting Combinations of Mutations and Drugs

Plos Computational Biology , 15:1006956 (2019)
Karin O., Agrawal A., Porat Z., Krizhanovsky V. & Alon U.

Senescent Cell Turnover Slows With Age Providing an Explanation For the Gompertz Law

Nature Communications , 10:5495 (2019)
Hausser J., Szekely P., Bar N., Zimmer A., Sheftel H., Caldas C. & Alon U.

Tumor Diversity and the Trade-Off Between Universal Cancer Tasks

Nature Communications , 10:5423 (2019)
Forkosh O., Karamihalev S., Roeh S., Alon U., Anpilov S., Touma C., Nussbaumer M., Flachskamm C., Kaplick P. M., Shemesh Y. & Chen A.

Identity Domains Capture Individual Differences From Across the Behavioral Repertoire

Nature Neuroscience , (2019)
Eilam B. & Alon U.

Children's Object Structure Perspective-Taking: Training and Assessment

International Journal of Science and Mathematics Education , (2019)
Miri Adler, Uri Alon

Fold-Change Detection in Biological Systems

Current Opinion in Systems Biology , (2018) [PDF]
Miri Adler, Avi Mayo, Xu Zhou, Ruth A. Franklin, Jeremy B. Jacox, Ruslan Medzhitov and Uri Alon

Endocytosis as a Stabilizing Mechanism For Tissue Homeostasis

PNAS , (2018) [PDF]
Zhou X, Franklin RA, Adler M, Jacox JB, Bailis W, Shyer JA, Flavell RA, Mayo A, Alon U, Medzhitov R

Circuit Design Features of a Stable Two-Cell System.

Cell , (2018) [PDF]

Preview: Building a Stable Relationship: Ensuring Homeostasis among Cell Types within a Tissue
Hila Sheftel, Pablo Szekely, Avi Mayo, Guy Sella, Uri Alon

Evolutionary Trade-Offs and the Structure of Polymorphisms

Philosophical Transactions of the Royal Society b , (2018) [PDF]

Effects of common genetic variations are predicted to push phenotypes along optimal tradeoffs.
Auron A. & Alon U. S.

Hypercalcemia: a Consultant's Approach

Pediatric Nephrology , (2018)
Alon U., Zilberstein M., Levy O. & Yahav E.

A General Path-Based Representation For Predicting Program Properties

, (2018)
Glass D. S. & Alon U.

Programming Cells and Tissues

Science , (2018)
Levy-Tzedek S., Moran G. S., Alon U. & Sal-Man N.

Peer Power: a Women's Peer-Mentoring Program at the Workplace: Example From the Academia

Embo Reports , 19:e47246 (2018)
Tendler A., Wolf B. C., Tiwari V., Alon U. & Danon A.

Fold-Change Response of Photosynthesis to Step Increases of Light Level

Iscience , (2018)
Hart Y., Goldberg H., Striem-Amit E., Mayo A. E., Noy L. & Alon U.

Creative Exploration as a Scale-Invariant Search on a Meaning Landscape

Nature Communications , 9:5411 (2018)
Vansickle J., Srivastava T. & Alon U.

Differences in Serum 25 (oh) - Vitamin d Binding Protein Level Between African American (aa) and Caucasian (cs) Children

Pediatric Nephrology , (2018)
Vansickle J., Srivastava T., Garg U. & Alon U.

Measured Versus Calculated Free Serum 25(oh)-Vitamin d Level: Which One is Better?

Pediatric Nephrology , (2018)
Korem Kohanim Y., Levi D., Jona G., Towbin B. D., Bren A. & Alon U.

A Bacterial Growth Law Out of Steady State

Cell Reports , (2018)
Vansickle J., Srivastava T. & Alon U.

Risk Factors For Complicated Acute and For Development of Chronic Kidney Disease in Children With Acute Diarrhea Positive Hemolytic Uremic Syndrome

Pediatric Nephrology , (2018)
Liron Y., Raindel N. & Alon U.

Dramatic Action: a theater-Based Paradigm For Analyzing Human Interactions

PLoS ONE , 13:e0193404 (2018)
Sheftel H., Szekely P., Mayo A., Sella G. & Alon U.

Evolutionary Trade-Offs and the Structure of Polymorphisms

Philosophical Transactions of the Royal Society b: Biological Sciences , 373:20170105 (2018)
Adler M., Mayo A., Zhou X., Franklin R. A., Jacox J. B., Medzhitov R. & Alon U.

Endocytosis as a Stabilizing Mechanism For Tissue Homeostasis

Proceedings of the National Academy of Sciences of the United States of America-Biological Sciences , (2018)
Zhou X., Franklin R. A., Adler M., Jacox J. B., Bailis W., Shyer J. A., Flavell R. A., Mayo A., Alon U. & Medzhitov R.

Circuit Design Features of a Stable Two-Cell System

Cell , (2018)
Adler M; Szekely P; Mayo A; Alon U

Optimal Regulatory Circuit Topologies For Fold-Change Detection

Cell Systems , (2017) [PDF]
- Out of a million possible circuits, only very few show optimal fold change detection - possibly explaining why only a few circuit designs recur across biology.
- Cell Systems preview
Towbin BD; Korem Y; Bren A; Doron S; Sorek R; Alon U;

Optimality and Sub-Optimality in a Bacterial Growth Law

Nature Communications , (2017) [PDF]

Bacteria use a rule of thumb to optimize growth rate, which often works but sometimes fails
Omer Karin, Uri Alon

Biphasic Response as a Mechanism Against Mutant Takeover in Tissue Homeostasis Circuits

Molecular Systems Biology , (2017) [PDF]

Biphasic control, where a signal is toxic at both high and low levels, eliminates mis-sensing mutants at the cost of decreased resilience to dynamic perturbations, with implications for different diseases.
Yuval Hart, Avraham E Mayo, Ruth Mayo, Liron Rozenkrantz, Avichai Tendler, Uri Alon, Lior Noy

Creative Foraging: an Experimental Paradigm For Studying Exploration and Discovery

PLoS ONE , (2017)

Downloadable data associated with the paper
Hart Y., Mayo A. E., Mayo R., Rozenkrantz L., Tendler A., Alon U. & Noy L.

Creative Foraging: an Experimental Paradigm For Studying Exploration and Discovery

PLoS ONE , 12:e0182133 (2017)
Harikumar A., Edupuganti R. R., Sorek M., Azad G. K., Markoulaki S., Sehnalova P., Legartova S., Bartova E., Farkash-Amar S., Jaenisch R., Alon U. & Meshorer E.

An Endogenously Tagged Fluorescent Fusion Protein Library in Mouse Embryonic Stem Cells

Stem Cell Reports , (2017)
Miri Adler; Pablo Szekely; Avi Mayo; Uri Alon

Optimal Regulatory Circuit Topologies For Fold-Change Detection

Cell Systems , 4:0003957861 (2017)
Karin O. & Alon U.

Biphasic Response as a Mechanism Against Mutant Takeover in Tissue Homeostasis Circuits

Molecular Systems Biology , 13:933 (2017)
Towbin B. D., Korem Y., Bren A., Doron S., Sorek R. & Alon U.

Optimality and Sub-Optimality in a Bacterial Growth Law

Nature Communications , 8:14123 (2017)
Alon U. S., Jarka D., Monachino P. J., VanSickle J. S. & Srivastava T.

Cinacalcet as an Alternative to Phosphate therapy in x-Linked Hypophosphataemic Rickets

Clinical Endocrinology , (2017)
Guy Gaziv; Lior Noy; Yuvalal Liron; Uri Alon

A Reduced-Dimensionality Approach to Uncovering Dyadic Modes of Body Motion in Conversations

PLoS ONE , 12:0003961295 (2017)
Zimmer A., Amar Farkash F. S., Danon T. & Alon U.

Dynamic Proteomics Reveals Bimodal Protein Dynamics of Cancer Cells in Response to Hsp90 Inhibitor

Bmc Systems Biology , 11:33 (2017)
Drayman N., Karin O., Mayo A., Danon T., Shapira L., Rafael D., Zimmer A., Bren A., Kobiler O. & Alon U.

Dynamic Proteomics of Herpes Simplex Virus Infection

Mbio , 8:ARTN e0161 (2017)
Zimmer A., Tendler A., Katzir I., Mayo A. & Alon U.

Prediction of Drug Cocktail Effects When the Number of Measurements is Limited

PLoS Biology , 15:e2002518 (2017)
Gaziv G., Noy L., Liron Y. & Alon U.

A Reduced-Dimensionality Approach to Uncovering Dyadic Modes of Body Motion in Conversations

PLoS ONE , 12:e0170786 (2017)
Rozenkrantz L., Mayo A. E., Ilan T., Hart Y., Noy L. & Alon U.

Placebo Can Enhance Creativity

PLoS ONE , 12:e0182466 (2017)
Adler M., Szekely P., Mayo A. & Alon U.

Optimal Regulatory Circuit Topologies For Fold-Change Detection

Cell Systems , (2017)
Hausser J., Szekely P., Bar N., Tzimmer A., Caldas C. & Alon U.

Evolutionary Trade-Offs in Tumor Development

Febs Journal , (2017)
Alon, U

Evolutionary Tradeoffs and the Geometry of Phenotype Space

Febs Journal , (2017)
Arigela Harikumar; Raghu Ram Edupuganti; Matan Sorek; Gajendra Kumar Azad; Styliani Markoulaki; Petra Sehnalova; Sona Legartova; Eva Bartova; Shlomit Farkash-Amar; Rudolf Jaenisch; Uri Alon; Eran Meshorer

An Endogenously Tagged Fluorescent Fusion Protein Library in Mouse Embryonic Stem Cells

Stem Cell Reports , 9:0004126600 (2017)
Anat Zimmer; Avichai Tendler; Itay Katzir; Avi Mayo; Uri Alon

Prediction of Drug Cocktail Effects When the Number of Measurements is Limited

PLoS Biology , 15:urn:bbbc6d (2017)
Karin O; Swisa A; Glaser B; Dor Y; Alon U;

Dynamical Compensation in Physiological Circuits

Molecular Systems Biology , (2016) [PDF]

Dynamical compensation provides robustness of the entire output trace robust to variation in key parameters and appears in endocrine and neuronal circuits
Hart Y., Czerniak E., Karnieli-Miller O., Mayo A., Ziv A., Biegon A., Citron A., Alon U.

Automated Video Analysis of Non-Verbal Communication in a Medical Setting

Frontiers in Psychology , (2016) [PDF]

Doctor patient body language associated with good placebo shows more synchrony and balanced leadership
Yaroshevich A., Bar-Yosef O., Boaretto E., Caracuta V., Greenbaum N., Porat N., Roskin J. & Alon U.

A Unique Assemblage of Engraved Plaquettes From Ein Qashish South, Jezreel Valley, Israel: Figurative and Non-Figurative Symbols of Late Pleistocene Hunters-Gatherers in the Levant

PLoS ONE , 11:e0160687 (2016)
Srivastava T., Krudys J., Mardis N. J., Sebestyen-VanSickle J. & Alon U. S.

Cinacalcet as Adjunctive therapy in Pseudohypoparathyroidism Type 1b

Pediatric Nephrology , (2016)
Hart Y., Czerniak E., Karnieli-Miller O., Mayo A. E., Ziv A., Biegon A., Citron A. & Alon U.

Automated Video Analysis of Non-Verbal Communication in a Medical Setting

Frontiers in Psychology , 7:1130 (2016)
Alon U.

Evolutionary Tradeoffs and the Geometry of Gene Expression Space

Febs Journal , (2016)
Feniger-Schaal R., Noy L., Hart Y., Koren-Karie N., Mayo A. E. & Alon U.

Would You Like to Play Together? Adults' Attachment and the Mirror Game

Attachment and Human Development , (2016)
Houri-Ze'evi L., Korem Y., Sheftel H., Faigenbloom L., Toker I. A., Dagan Y., Awad L., Degani L., Alon U. & Rechavi O.

A Tunable Mechanism Determines the Duration of the Transgenerational Small Rna Inheritance in c. Elegans

Cell , (2016)
Karin O., Swisa A., Glaser B., Dor Y. & Alon U.

Dynamical Compensation in Physiological Circuits

Molecular Systems Biology , 12:886 (2016)
Bren A., Park J. O., Towbin B. D., Dekel E., Rabinowitz J. D. & Alon U.

Glucose Becomes One of the Worst Carbon Sources For e.Coli on Poor Nitrogen Sources Due to Suboptimal Levels of CAMP

Scientific Reports , 6:24834 (2016)
Czerniak E., Biegon A., Ziv A., Karnieli-Miller O., Weiser M., Alon U. & Citron A.

Manipulating the Placebo Response in Experimental Pain by Altering Doctor's Performance Style

Frontiers in Psychology , 7:874 (2016)
Keren L., Hausser J., Lotan-Pompan M., Vainberg Slutskin I., Alisar H., Kaminski S., Weinberger A., Alon U., Milo R. & Segal E.

Massively Parallel Interrogation of the Effects of Gene Expression Levels on Fitness

Cell , (2016)
Zimmer A., Katzir I., Dekel E., Mayo A. E., Alon U., Arcavi I., Challis P., Chambers K. C., Chen T. -., Cowperthwaite P. S., Gal-Yam A., Hosseinzadeh G., Howell D. A., Inserra C., Kankare E., Magnier E. A., Maguire K., Mazzali P. A., McCully C., Milisavljevic D., Smith K. W., Taubenberger S., Valenti S., Wainscoat R. J., Yaron O. & Young D. R.

Prediction of Multidimensional Drug Dose Responses Based on Measurements of Drug Pairs

Proceedings of the National Academy of Sciences of the United States of America , (2016) [PDF]
- Commentary
- Editor's Choice - Science Translational Medicine
Dahan A., Noy L., Hart Y., Mayo A. & Alon U.

Exit From Synchrony in Joint Improvised Motion

PLoS ONE , 11:e0160747 (2016)
Hart Y, Sheftel H, Hausser J, Szekely P, Ben-Moshe NB, Korem Y, Tendler A, Mayo AE, Alon U,

Inferring Biological Tasks Using Pareto Analysis of High-Dimensional Data

Nature Methods , (2015) [PDF]

For accessing the package: click here
Tendler, A; Mayo, A; Alon, U

Evolutionary Tradeoffs, Pareto Optimality and the Morphology of Ammonite Shells

Bmc Systems Biology , 9:12 (2015) [PDF]

Editors Pick BMC Systems Biology:

"Optimizing ammonite forms

Across ammonite genera, trade-offs between different shape phenotypes resulted in a small range of successful forms, that could be represented by a pyramid in the diagram of possible shape parameters, with each point representing an optimized archetype.

BMC Systems Biology 2015, 9:12"
Friedlander T, Mayo AE, Tlusty T, Alon U,

Evolution of Bow-Tie Architectures in Biology

Plos Computational Biology , 11:UNSP e1004 (2015) [PDF]
Korem Y, Szekely P, Hart Y, Sheftel H, Hausser J,Mayo A, Rothenberg ME, Kalisky T, Alon U

Geometry of the Gene Expression Space of Individual Cells

Plos Computational Biology , (2015) [PDF] [SOM]
- Science's Editors' Choice
- PLOS Collections - Editor's Picks: Cell Biology
Szekely P., Korem Y., Moran U., Mayo A. & Alon U.

The Mass-Longevity Triangle: Pareto Optimality and the Geometry of Life-History Trait Space.

Plos Computational Biology , 11:26465336 (2015) [PDF]
Noy L, Levit-Binun N, Golland Y,

Being in the Zone: Physiological Markers of Togetherness in Joint Improvisation

Frontiers in Human Neuroscience , 9:187 (2015) [PDF]
Feniger-Schaal, R; Noy, L; Hart, Y; Koren-Karie, N; Mayo, A E; Alon, U

Would You Like to Play Together? Adults' Attachment and the Mirror Game

Attachment &Amp; Human Development , (2015) [PDF]
Noy L, Alon U, Friedman J

Corrective Jitter Motion Shows Similar Individual Frequencies For the Arm and the Finger

Experimental Brain Research , (2015) [PDF]
Friedlander T., Mayo A. E., Tlusty T. & Alon U.

Evolution of Bow-Tie Architectures in Biology

Plos Computational Biology , 11:e1004055 (2015)
Noy L., Alon U. & Friedman J.

Corrective Jitter Motion Shows Similar Individual Frequencies For the Arm and the Finger

Experimental Brain Research , (2015)
Hart Y., Sheftel H., Hausser J., Szekely P., Ben-Moshe N. B., Korem Y., Tendler A., Mayo A. E. & Alon U.

Inferring Biological Tasks Using Pareto Analysis of High-Dimensional Data

Nature Methods , (2015)
Pereira L., Kratsios P. P., Serrano-Saiz E., Sheftel H., Mayo A. E., Hall D. H., White J. G., LeBoeuf B., Garcia L. R., Alon U. & Hobert O.

A Cellular and Regulatory Map of the Cholinergic Nervous System of c. Elegans

Elife , 4:12432 (2015)
Tendler A., Mayo A. & Alon U.

Evolutionary Tradeoffs, Pareto Optimality and the Morphology of Ammonite Shells

Bmc Systems Biology , 9:12 (2015)
Rothschild, D; Dekel, E; Hausser, J; Bren, A; Aidelberg, G; Szekely, P; Alon, U

Linear Superposition and Prediction of Bacterial Promoter Activity Dynamics in Complex Conditions

Plos Computational Biology , 10:e1003602 (2014) [PDF]
Yuval Hart, Shlomit Reich-Zeliger, Yaron E. Antebi, Irina Zaretsky, Avraham E. Mayo, Uri Alon, Nir Friedman

Paradoxical Signaling by a Secreted Molecule Leads to Homeostasis of Cell Levels

Cell , (2014) [PDF]

See preview by Hyun Youk and Wendell A. Lim
Adler, M; Mayo, A; Alon, U

Logarithmic and Power Law Input-Output Relations in Sensory Systems With Fold-Change Detection

Plos Computational Biology , 10:e1003781 (2014) [PDF]
Aidelberg G, Towbin BD, Rothschild D, Dekel E, Bren A, Alon U,

Hierarchy of Non-Glucose Sugars in Escherichia Coli

Bmc Systems Biology , 8:133 (2014) [PDF]
Farkash-Amar, S; Zimmer, A; Eden, E; Cohen, A; Geva-Zatorsky, N; Cohen, L; Milo, R; Sigal, A; Danon, T; Alon, U

Noise Genetics: Inferring Protein Function by Correlating Phenotype With Protein Levels and Localization in Individual Human Cells

Plos Genetics , 10:e1004176 (2014) [PDF]
Noy L

The Mirror Game: a Natural Science Study of Togetherness

In: Citron, Atay, Sharon Aronson-Lehavi, and David Zerbib, Eds. Performance Studies in Motion: International Perspectives and Practices in the Twenty-First Century , (2014) [PDF] [SOM]
Hart Y, Noy L, Feniger-Schaal R, Mayo AE, Alon U,

Individuality and Togetherness in Joint Improvised Motion

PLoS ONE , 9:e87213 (2014) [PDF]
Farkash-Amar S., Zimmer A., Eden E., Cohen A., Geva Zatorsky Z. N., Cohen L., Milo R., Sigal A., Danon T. & Alon U.

Noise Genetics: Inferring Protein Function by Correlating Phenotype With Protein Levels and Localization in Individual Human Cells

Plos Genetics , 10:e1004176 (2014)
Rothschild D., Dekel E., Hausser J., Bren A., Aidelberg G., Szekely P. & Alon U.

Linear Superposition and Prediction of Bacterial Promoter Activity Dynamics in Complex Conditions

Plos Computational Biology , 10:e1003602 (2014)
Dasgupta T., Croll D. H., Owen J. A., Vander Heiden H. M. G., Locasale J. W., Alon U., Cantley L. C. & Gunawardena J.

A Fundamental Trade-Off in Covalent Switching and Its Circumvention by Enzyme Bifunctionality in Glucose Homeostasis

Journal of Biological Chemistry , (2014)
Dasgupta, T; Croll, DH; Owen, JA; Vander Heiden, MG; Locasale, JW; Alon, U; Cantley, LC; Gunawardena, J

A Fundamental Trade-Off in Covalent Switching and Its Circumvention by Enzyme Bifunctionality in Glucose Homeostasis

Journal of Biological Chemistry , (2014)
Hart Y., Noy L., Feniger-Schaal R., Mayo A. & Alon U.

Individuality and Togetherness in Joint Improvised Motion

PLoS ONE , 9:e87213 (2014)
Aidelberg G., Towbin B. D., Rothschild D., Dekel E., Bren A. & Alon U.

Hierarchy of Non-Glucose Sugars in Escherichia Coli

Bmc Systems Biology , 8:133 (2014)
Rozenkrantz L., Noy L., Hart Y., Mayo A. & Alon U.

Increasing Creativity Using the Placebo Effect

Journal of Molecular Neuroscience , (2014)
Hart Y., Reich-Zeliger S., Antebi Y. E., Zaretsky I., Mayo A. E., Alon U. & Friedman N.

Paradoxical Signaling by a Secreted Molecule Leads to Homeostasis of Cell Levels

Cell , (2014)
Adler M., Mayo A. & Alon U.

Logarithmic and Power Law Input-Output Relations in Sensory Systems With Fold-Change Detection

Plos Computational Biology , 10:e1003781 (2014)
Hart Y, Alon U

The Utility of Paradoxical Components in Biological Circuits

Molecular Cell , (2013) [PDF]
Leeat Keren; Ora Zackay; Maya Lotan-Pompan; Uri Barenholz; Erez Dekel; Vered Sasson; Guy Aidelberg; Anat Bren; Danny Zeevi; Adina Weinberger; Uri Alon; Ron Milo; Eran Segal

Promoters Maintain their Relative Activity Levels Under Different Growth Conditions

Molecular Systems Biology , 9:000021320 (2013) [PDF]
Madar D, Dekel E, Bren A, Zimmer A, Porat Z, Alon U,

Promoter Activity Dynamics in the Lag Phase of Escherichia Coli

Bmc Systems Biology , 7:136 (2013) [PDF]

Commentary by Daniel Schultz and Roy Kishony
Anat Bren; Yuval Hart; Erez Dekel; Daniel Koster; Uri Alon

The Last Generation of Bacterial Growth in Limiting Nutrient

Bmc Systems Biology , 7:000007820 (2013) [PDF]
Yuval Hart; Avraham E. Mayo; Oren Shoval; Uri Alon

Comparing Apples and Oranges: Fold-Change Detection of Multiple Simultaneous Inputs

PLoS ONE , 8:000018118 (2013) [PDF]
Pablo Szekely; Hila Sheftel; Avi Mayo; Uri Alon

Evolutionary Tradeoffs Between Economy and Effectiveness in Biological Homeostasis Systems

Plos Computational Biology , 9:000037920 (2013) [PDF]
Kathryn D. Kavanagh; Oren Shoval; Benjamin B. Winslow; Uri Alon; Brian P. Leary; Akinori Kan; Clifford J. Tabin

Developmental Bias in the Evolution of Phalanges

Proceedings of the National Academy of Sciences of the United States of America , 110:000021171 (2013) [PDF]
Hila Sheftel; Oren Shoval; Avi Mayo; Uri Alon

The Geometry of the Pareto Front in Biological Phenotype Space

Ecology and Evolution , 3:000035756 (2013) [PDF]
Tamar Friedlander; Avraham E. Mayo; Tsvi Tlusty; Uri Alon

Mutation Rules and the Evolution of Sparseness and Modularity in Biological Systems

PLoS ONE , 8:000013903 (2013) [PDF]
Hart Y., Mayo A. E., Shoval O. & Alon U.

Comparing Apples and Oranges: Fold-Change Detection of Multiple Simultaneous Inputs

PLoS ONE , (2013)
Kavanagh K. D., Shoval O., Winslow B. B., Alon U., Leary B. P., Kan A. & Tabin C. J.

Developmental Bias in the Evolution of Phalanges

Proceedings of the National Academy of Sciences of the United States of America , (2013)
Keren L., Zackay O., Lotan-Pompan M., Barenholz U., Dekel E., Sasson V., Aidelberg G., Bren A., Zeevi D., Weinberger A., Alon U., Milo R. & Segal E.

Promoters Maintain their Relative Activity Levels Under Different Growth Conditions

Molecular Systems Biology , (2013)
Bren A., Hart Y., Dekel E., Koster D. & Alon U.

The Last Generation of Bacterial Growth in Limiting Nutrient

Bmc Systems Biology , (2013)
Mitarai N., Alon U. & Jensen M. H.

Entrainment of Noise-Induced and Limit Cycle Oscillators Under Weak Noise

Chaos , (2013)
Sheftel H., Shoval O., Mayo A. & Alon U.

The Geometry of the Pareto Front in Biological Phenotype Space

Ecology and Evolution , (2013)
Namiko Mitarai; Uri Alon; Mogens H. Jensen

Entrainment of Noise-Induced and Limit Cycle Oscillators Under Weak Noise

Chaos , 23:000027494 (2013)
Hart Y. & Alon U.

The Utility of Paradoxical Components in Biological Circuits

Molecular Cell , (2013)
Szekely P., Sheftel H., Mayo A. & Alon U.

Evolutionary Tradeoffs Between Economy and Effectiveness in Biological Homeostasis Systems

Plos Computational Biology , (2013)
Shoval O., Sheftel H., Shinar G., Hart Y., Ramote O., Mayo A., Dekel E., Kavanagh K. & Alon U.

Response to Comment on &Quot;Evolutionary Trade-Offs, Pareto Optimality, and the Geometry of Phenotype Space&Quot;

Science , (2013)
Friedlander T., Mayo A. E., Tlusty T. & Alon U.

Mutation Rules and the Evolution of Sparseness and Modularity in Biological Systems

PLoS ONE , (2013)
Olin K. Silander; Nela Nikolic; Alon Zaslaver; Anat Bren; Ilya Kikoin; Uri Alon; Martin Ackermann

A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia Coli

Plos Genetics , 8:000036466 (2012)
Yuval Hart; Yaron E. Antebi; Avraham E. Mayo; Nir Friedman; Uri Alon

Design Principles of Cell Circuits With Paradoxical Components

Proceedings of the National Academy of Sciences of the United States of America , 109:000018115 (2012) [PDF] [SOM]
Vered Sasson; Irit Shachrai; Anat Bren; Erez Dekel; Uri Alon

Mode of Regulation and the Insulation of Bacterial Gene Expression

Molecular Cell , 46:000033772 (2012) [PDF] [SOM]
Shlomit Farkash-Amar; Eran Eden; Ariel Cohen; Zatorsky, Naama Geva Zatorsky; Lydia Cohen; Ron Milo; Alex Sigal; Tamar Danon; Uri Alon

Dynamic Proteomics of Human Protein Level and Localization Across the Cell Cycle

PLoS ONE , 7:000012765 (2012) [PDF]
Zatorsky, Naama Geva Zatorsky; Irina Issaeva; Avi Mayo; Ariel Cohen; Erez Dekel; Tamar Danon; Lydia Cohen; Yuvalal Liron; Uri Alon; Eran Eden

Using Bleach-Chase to Measure Protein Half-Lives in Living Cells

Nature Protocols , 7:000015208 (2012) [PDF]
Oren Shoval; Hila Sheftel; Guy Shinar; Yuval Hart; Omer Ramote; Avi Mayo; Erez Dekel; K. Kavanagh; Uri Alon

Evolutionary Trade-Offs, Pareto Optimality, and the Geometry of Phenotype Space

Science , 336:000036281 (2012) [PDF] [SOM]
- See also Science Perspective: [PDF]
Noy L, Hart Y, Andrew N, Ramote O, Mayo A, Alon U

A Quantitative Study of Creative Leaps

International Conference on Computational Creativity , (2012) [PDF]
Alon U.

Design Principles of Biological Circuits

Febs Journal , (2012)
Farkash-Amar S., Eden E., Cohen A., Geva Zatorsky Z. N., Cohen L., Milo R., Sigal A., Danon T. & Alon U.

Dynamic Proteomics of Human Protein Level and Localization Across the Cell Cycle

PLoS ONE , (2012)
Sasson V., Shachrai I., Bren A., Dekel E. & Alon U.

Mode of Regulation and the Insulation of Bacterial Gene Expression

Molecular Cell , (2012)
Geva Zatorsky Z. N., Issaeva I., Mayo A., Cohen A., Dekel E., Danon T., Cohen L., Liron Y., Alon U. & Eden E.

Using Bleach-Chase to Measure Protein Half-Lives in Living Cells

Nature Protocols , (2012)
Shoval O., Sheftel H., Shinar G., Hart Y., Ramote O., Mayo A., Dekel E., Kavanagh K. & Alon U.

Evolutionary Trade-Offs, Pareto Optimality, and the Geometry of Phenotype Space

Science , (2012)
Hart Y., Antebi Y. E., Mayo A. E., Friedman N. & Alon U.

Design Principles of Cell Circuits With Paradoxical Components

Proceedings of the National Academy of Sciences of the United States of America , (2012)
Silander O. K., Nikolic N., Zaslaver A., Bren A., Kikoin I., Alon U. & Ackermann M.

A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia Coli

Plos Genetics , (2012)
Koster D. A., Mayo A., Bren A. & Alon U.

Surface Growth of a Motile Bacterial Population Resembles Growth in a Chemostat

Journal of Molecular Biology , (2012)
Daniel A. Koster; Avraham Mayo; Anal Bren; Uri Alon

Surface Growth of a Motile Bacterial Population Resembles Growth in a Chemostat

Journal of Molecular Biology , 424:000022386 (2012) [PDF]
Daniel Madar; Erez Dekel; Anat Bren; Uri Alon

Negative Auto-Regulation Increases the Input Dynamic-Range of the Arabinose System of Escherichia Coli

Bmc Systems Biology , 5:000025621 (2011) [PDF] [SOM]
Bren A. & Alon U.

Architecture and Dynamics of Transcriptional Networks

, (2011) [PDF]
Madar D, Hart Y, Yuan J, Bren A, Mayo AE, Rabinowitz JD, Alon U,

Robust Control of Nitrogen Assimilation by a Bifunctional Enzyme in e. Coli

Febs Journal , (2011)
Oren Shoval; Uri Alon; Eduardo Sontag

Symmetry Invariance For Adapting Biological Systems

Siam Journal on Applied Dynamical Systems , 10:000036279 (2011)
Yuval Hart; Avraham E. Mayo; Ron Milo; Uri Alon

Robust Control of Pep Formation Rate in the Carbon Fixation Pathway of c-4 Plants by a Bifunctional Enzyme

Bmc Systems Biology , 5:000018117 (2011) [PDF]
Yuval Hart; Daniel Madar; Jie Yuan; Anat Bren; Avraham E. Mayo; Joshua D. Rabinowitz; Uri Alon

Robust Control of Nitrogen Assimilation by a Bifunctional Enzyme in E. Coli

Molecular Cell , 41:000018116 (2011) [PDF]
Eran Eden; Zatorsky, Naama Geva Zatorsky; Irina Issaeva; Ariel Cohen; Erez Dekel; Tamar Danon; Lydia Cohen; Avi Mayo; Uri Alon

Proteome Half-Life Dynamics in Living Human Cells

Science , 331:000011535 (2011) [PDF] [SOM]
Lior Noy; Erez Dekel; Uri Alon

The Mirror Game as a Paradigm For Studying the Dynamics of Two People Improvising Motion Together

PNAS , 108:000028956 (2011) [PDF]
- See also: Inter-Brain Synchronization during Social Interaction.
- See also Nature news: [PDF]
- See also Weizmann news (Hebrew): [PDF]
Madar D., Hart Y., Yuan J., Bren A., Mayo A. E., Rabinowitz J. D. & Alon U.

Robust Control of Nitrogen Assimilation by a Bifunctional Enzyme in E. Coli

Febs Journal , (2011)
Shoval O., Alon U. & Sontag E.

Input Symmetry Invariance, and Applications to Biological Systems

2011 50th Ieee Conference on Decision and Control and European Control Conference (Cdc-Ecc) , (2011)
Hart Y., Madar D., Yuan J., Bren A., Mayo A. E., Rabinowitz J. D. & Alon U.

Robust Control of Nitrogen Assimilation by a Bifunctional Enzyme in E. Coli

Molecular Cell , (2011)
Eden E., Geva Zatorsky Z. N., Issaeva I., Cohen A., Dekel E., Danon T., Cohen L., Mayo A. & Alon U.

Proteome Half-Life Dynamics in Living Human Cells

Science , (2011)
Hart Y., Mayo A. E., Milo R. & Alon U.

Robust Control of Pep Formation Rate in the Carbon Fixation Pathway of c-4 Plants by a Bifunctional Enzyme

Bmc Systems Biology , 5:171 (2011)
Moran G. S. & Alon U.

Playback theatre and Recovery in Mental Health: Preliminary Evidence

Arts in Psychotherapy , (2011)
Noy L., Dekel E. & Alon U.

The Mirror Game as a Paradigm For Studying the Dynamics of Two People Improvising Motion Together

Proceedings of the National Academy of Sciences of the United States of America , (2011)
Madar D., Dekel E., Bren A. & Alon U.

Negative Auto-Regulation Increases the Input Dynamic-Range of the Arabinose System of Escherichia Coli

Bmc Systems Biology , 5:111 (2011)
Galia S. Moran; Uri Alon

Playback theatre and Recovery in Mental Health: Preliminary Evidence

Arts in Psychotherapy , 38:000027713 (2011) [PDF]
Shoval O., Alon U. & Sontag E.

Symmetry Invariance For Adapting Biological Systems

Siam Journal on Applied Dynamical Systems , (2011)
Oren Shoval; Uri Alon

Snapshot: Network Motifs

Cell , 143:000036278 (2010)
Guy Shinar, Martin Feinberg

Structural Sources of Robustness in Biochemical Reaction Networks

Science , (2010) [PDF]
Irit Shachrai; Alon Zaslaver; Uri Alon; Erez Dekel

Cost of Unneeded Proteins in e. Coil is Reduced After Several Generations in Exponential Growth

Molecular Cell , 38:000035032 (2010) [PDF]
Oren Shoval; Lea Goentoro; Yuval Hart; Avi Mayo; Eduardo Sontag; Uri Alon

Fold-Change Detection and Scalar Symmetry of Sensory Input Fields

Proceedings of the National Academy of Sciences of the United States of America , 107:000036280 (2010) [PDF]
Elad Noor; Eran Eden; Ron Milo; Uri Alon

Central Carbon Metabolism as a Minimal Biochemical Walk Between Precursors For Biomass and Energy

Molecular Cell , 39:000028865 (2010) [PDF]
Zatorsky, Naama Geva Zatorsky; Erez Dekel; Ariel Cohen; Tamar Danon; Lydia Cohen; Uri Alon

Protein Dynamics in Drug Combinations: a Linear Superposition of Individual-Drug Responses

Cell , 140:000015207 (2010) [PDF]

BioWorld: [PDF]
Milana Frenkel-Morgenstern; Ariel Cohen; Zatorsky, Naama Geva Zatorsky; Eran Eden; Jaime Prilusky; Irina Issaeva; Alex Sigal; Cellina Cohen-Saidon; Yuvalal Liron; Lydia Cohen; Tamar Danon; Natalie Perzov; Uri Alon

Dynamic Proteomics: a Database For Dynamics and Localizations of Endogenous Fluorescently-Tagged Proteins in Living Human Cells

Nucleic Acids Research , 38:000013795 (2010) [PDF]
Zatorsky, Naama Geva Zatorsky; Erez Dekel; Eric Batchelor; Galit Lahav; Uri Alon

Fourier Analysis and Systems Identification of the P53 Feedback Loop

Proceedings of the National Academy of Sciences of the United States of America , 107:000015206 (2010) [PDF]
Zatorsky, Naama Geva Zatorsky; A. A. Cohen; Eran Eden; Erez Dekel; Milana Frenkel-Morgenstern; Irina Issaeva; Tamar Danon; Liron Cohen; N. Perzov; Ron Milo; A. Sigal; Uri Alon

Dynamics Proteomics of Individual Cancer Cells in Response to Drugs

, :000015205 (2010)
Irina Issaeva; Ariel Cohen; Eran Eden; Cellina Cohen-Saidon; Tamar Danon; Lydia Cohen; Uri Alon

Generation of Double-Labeled Reporter Cell Lines For Studying co-Dynamics of Endogenous Proteins in Individual Human Cells

PLoS ONE , 5:000019668 (2010) [PDF]
Jay A. Rosenheim; Uri Alon; Guy Shinar

Evolutionary Balancing of Fitness-Limiting Factors

American Naturalist , 175:000032823 (2010)
Uri Alon

How to Build a Motivated Research Group

Molecular Cell , 37:000002652 (2010) [PDF]
Alon U.

Design Principles of Biological Circuits

Febs Journal , (2010)
Geva Zatorsky Z. N., Dekel E., Batchelor E., Lahav G. & Alon U.

Fourier Analysis and Systems Identification of the P53 Feedback Loop

Proceedings of the National Academy of Sciences of the United States of America , (2010)
Geva Zatorsky Z. N., Dekel E., Cohen A., Danon T., Cohen L. & Alon U.

Protein Dynamics in Drug Combinations: a Linear Superposition of Individual-Drug Responses

Cell , (2010)
Issaeva I., Cohen A., Eden E., Cohen-Saidon C., Danon T., Cohen L. & Alon U.

Generation of Double-Labeled Reporter Cell Lines For Studying co-Dynamics of Endogenous Proteins in Individual Human Cells

PLoS ONE , 5:e13524 (2010)
Alon U.

How to Build a Motivated Research Group

Molecular Cell , (2010)
Noor E., Eden E., Milo R. & Alon U.

Central Carbon Metabolism as a Minimal Biochemical Walk Between Precursors For Biomass and Energy

Molecular Cell , (2010)
Rosenheim J. A., Alon U. & Shinar G.

Evolutionary Balancing of Fitness-Limiting Factors

American Naturalist , (2010)
Geva Zatorsky Z. N., Cohen A. A., Eden E., Dekel E., Frenkel-Morgenstern M., Issaeva I., Danon T., Cohen L., Perzov N., Milo R., Sigal A. & Alon U.

Dynamics Proteomics of Individual Cancer Cells in Response to Drugs

Febs Journal , (2010)
Shachrai I., Zaslaver A., Alon U. & Dekel E.

Cost of Unneeded Proteins in e. Coil is Reduced After Several Generations in Exponential Growth

Molecular Cell , (2010)
Shoval O. & Alon U.

Snapshot: Network Motifs

Cell , (2010)
Shoval O., Goentoro L., Hart Y., Mayo A., Sontag E. & Alon U.

Fold-Change Detection and Scalar Symmetry of Sensory Input Fields

Proceedings of the National Academy of Sciences of the United States of America , (2010)
Frenkel-Morgenstern M., Cohen A., Geva Zatorsky Z. N., Eden E., Prilusky J., Issaeva I., Sigal A., Cohen-Saidon C., Liron Y., Cohen L., Danon T., Perzov N. & Alon U.

Dynamic Proteomics: a Database For Dynamics and Localizations of Endogenous Fluorescently-Tagged Proteins in Living Human Cells

Nucleic Acids Research , (2010)
Ofer Rahat; Uri Alon; Yaakov Levy; Gideon Schreiber

Understanding Hydrogen-Bond Patterns in Proteins Using Network Motifs

Bioinformatics , 25:000031370 (2009)
Lea Goentoro; Oren Shoval; Marc W. Kirschner; Uri Alon

The Incoherent Feedforward Loop Can Provide Fold-Change Detection in Gene Regulation

Molecular Cell , 36:000015713 (2009) [PDF]
Guy Shinar; Uri Alon; Martin Feinberg

Sensitivity and Robustness in Chemical Reaction Networks

Siam Journal on Applied Mathematics , 69:000036033 (2009) [PDF]
Guy Shinar; Joshua D. Rabinowitz; Uri Alon

Robustness in Glyoxylate Bypass Regulation

Plos Computational Biology , 5:000036041 (2009) [PDF]
Zaslaver, A; Kaplan, S; Bren, A; Jinich, A; Mayo, A; Dekel, E; Alon, U; Itzkovitz, S

Invariant Distribution of Promoter Activities in Escherichia Coli

Plos Computational Biology , (2009) [PDF]
Kfir Oved; Eran Eden; Martin Akerman; Roy Noy; Ron Wolchinsky; Orit Izhaki; Ester Schallmach; Adva Kubi; Naama Zabari; Jacob Schachter; Uri Alon; Yael Mandel-Gutfreund; Michal J. Besser; Yoram Reiter

Predicting and Controlling the Reactivity of Immune Cell Populations Against Cancer

Molecular Systems Biology , 5:000029491 (2009)
Cellina Cohen-Saidon; A. A. Cohen; A. Sigal; Uri Alon

Dynamics of Erk2 in Individual Living Human Cells

, :000009787 (2009)
Ariel Cohen; Tomer Kalisky; Avi Mayo; Zatorsky, Naama Geva Zatorsky; Tamar Danon; Irina Issaeva; Ronen Benjamine Kopito; Natalie Perzov; Ron Milo; Alex Sigal; Uri Alon

Protein Dynamics in Individual Human Cells: Experiment and theory

PLoS ONE , 4:000009444 (2009) [PDF]
Cellina Cohen-Saidon; Ariel Cohen; Alex Sigal; Yuvalal Liron; Uri Alon

Dynamics and Variability of Erk2 Response to Egf in Individual Living Cells

Molecular Cell , 36:000009788 (2009) [PDF]
Nadav Kashtan; Avi E. Mayo; Tomer Kalisky; Uri Alon

An Analytically Solvable Model For Rapid Evolution of Modular Structure

Plos Computational Biology , 5:000020859 (2009) [PDF]
Nadav Kashtan; Merav Parter; Erez Dekel; Avi E. Mayo; Uri Alon

Extinctions in Heterogeneous Environments and the Evolution of Modularity

Evolution , 63:000020861 (2009) [PDF]
Alon U.

How to Give a Good Talk

Molecular Cell , (2009)
Cohen A., Kalisky T., Mayo A., Geva Zatorsky Z. N., Danon T., Issaeva I., Kopito R. B., Perzov N., Milo R., Sigal A. & Alon U.

Protein Dynamics in Individual Human Cells: Experiment and theory

PLoS ONE , (2009)
Cohen-Saidon C., Cohen A., Sigal A., Liron Y. & Alon U.

Dynamics and Variability of Erk2 Response to Egf in Individual Living Cells

Molecular Cell , (2009)
Oved K., Eden E., Akerman M., Noy R., Wolchinsky R., Izhaki O., Schallmach E., Kubi A., Zabari N., Schachter J., Alon U., Mandel-Gutfreund Y., Besser M. J. & Reiter Y.

Predicting and Controlling the Reactivity of Immune Cell Populations Against Cancer

Molecular Systems Biology , (2009)
Rahat O., Alon U., Levy Y. & Schreiber G.

Understanding Hydrogen-Bond Patterns in Proteins Using Network Motifs

Bioinformatics , (2009)
Shinar G., Rabinowitz J. D. & Alon U.

Robustness in Glyoxylate Bypass Regulation

Plos Computational Biology , (2009)
Shinar G., Alon U. & Feinberg M.

Sensitivity and Robustness in Chemical Reaction Networks

Siam Journal on Applied Mathematics , (2009)
Goentoro L., Shoval O., Kirschner M. W. & Alon U.

The Incoherent Feedforward Loop Can Provide Fold-Change Detection in Gene Regulation

Molecular Cell , (2009)
Kashtan N., Mayo A. E., Kalisky T. & Alon U.

An Analytically Solvable Model For Rapid Evolution of Modular Structure

Plos Computational Biology , (2009)
Kashtan N., Parter M., Dekel E., Mayo A. E. & Alon U.

Extinctions in Heterogeneous Environments and the Evolution of Modularity

Evolution , (2009)
Uri Alon

How to Choose a Good Scientific Problem

Molecular Cell , 35:000002653 (2009)

Click here for more information on nurturing science
Zaslaver A., Kaplan S., Bren A., Jinich A., Mayo A., Dekel E., Alon U. & Itzkovitz S.

Invariant Distribution of Promoter Activities in Escherichia Coli

Plos Computational Biology , (2009)
Cohen-Saidon C., Cohen A. A., Sigal A. & Alon U.

Dynamics of Erk2 in Individual Living Human Cells

Febs Journal , (2009)
Uri Alon

How to Give a Good Talk

Molecular Cell , 36:000002654 (2009)

Click here for more information on nurturing science
Alon U.

How to Choose a Good Scientific Problem

Molecular Cell , (2009)
Shai Kaplan; Anat Bren; Alon Zaslaver; Erez Dekel; Uri Alon

Diverse Two-Dimensional Input Functions Control Bacterial Sugar Genes

Molecular Cell , 29:000020614 (2008) [PDF]
Shai Kaplan; Anat Bren; Erez Dekel; Uri Alon

The Incoherent Feed-Forward Loop Can Generate Non-Monotonic Input Functions For Genes

Molecular Systems Biology , 4:000020613 (2008) [PDF]
A. A. Cohen; Zatorsky, Naama Geva Zatorsky; Eran Eden; Milana Frenkel-Morgenstern; Irina Issaeva; A. Sigal; Ron Milo; Cellina Cohen-Saidon; Zvi Kam; Liron Cohen; Yuvalal Liron; Tamar Danon; N. Perzov; Uri Alon

Dynamic Proteomics of Individual Cancer Cells in Response to a Drug

Science , 322:000009443 (2008) [PDF] [SOM]
See also reviews:
- Science: [PDF]
- Nature: [PDF]
- Nature Reviews Cancer: [PDF]
- Nature Chemical Biology: [PDF]
- Nature Biotechnology: [PDF]
- Chemical Research in Toxicology: [PDF]
- Journal of Proteome Research: [Link]
- Chemical & Engineering News: [Link]
Oxman E., Dekel E., Alon U.

Defined Order of Evolutionary Adaptations: Experimental Evidence.

Evolution , (2008) [PDF]
Merav Parter; Nadav Kashtan; Uri Alon

Facilitated Variation: How Evolution Learns From Past Environments to Generalize to New Environments

Plos Computational Biology , 4:000029751 (2008) [PDF] [SOM]
Uri Alon

(Essay) a Biophysicist Learns the Art of Hugging.

Nature , (2008) [PDF]
Cohen A. A., Geva Zatorsky Z. N., Eden E., Frenkel-Morgenstern M., Issaeva I., Sigal A., Milo R., Cohen-Saidon C., Kam Z., Cohen L., Liron Y., Danon T., Perzov N. & Alon U.

Dynamic Proteomics of Individual Cancer Cells in Response to a Drug

Science , (2008)
Parter M., Kashtan N. & Alon U.

Facilitated Variation: How Evolution Learns From Past Environments to Generalize to New Environments

Plos Computational Biology , (2008)
Kaplan S., Bren A., Dekel E. & Alon U.

The Incoherent Feed-Forward Loop Can Generate Non-Monotonic Input Functions For Genes

Molecular Systems Biology , (2008)
Kaplan S., Bren A., Zaslaver A., Dekel E. & Alon U.

Diverse Two-Dimensional Input Functions Control Bacterial Sugar Genes

Molecular Cell , (2008)
Uri Alon

Network Motifs: theory and Experimental Approaches

Nature Reviews Genetics , 8:000002655 (2007) [PDF]
Nitzan Rosenfeld; Jonathan W. Young; Uri Alon; Peter S. Swain; Michael B. Elowitz

Accurate Prediction of Gene Feedback Circuit Behavior From Component Properties

Molecular Systems Biology , 3:000032806 (2007)
Guy Shinar; Ron Milo; Maria Rodriguez Martinez; Uri Alon

Input-Output Robustness in Simple Bacterial Signaling Systems

Proceedings of the National Academy of Sciences of the United States of America , 104:000036040 (2007) [PDF]
Alex Sigal; Tamar Danon; Ariel Cohen; Ron Milo; Zatorsky, Naama Geva Zatorsky; Gila Lustig; Yuvalal Liron; Uri Alon; Natalie Perzov

Generation of a Fluorescently Labeled Endogenous Protein Library in Living Human Cells

Nature Protocols , 2:000036441 (2007) [PDF]
Tomer Kalisky; Erez Dekel; Uri Alon

Cost-Benefit theory and Optimal Design of Gene Regulation Functions

Physical Biology , 4:000020406 (2007) [PDF]
Shalev Itzkovitz; Uri Alon

The Genetic Code is Nearly Optimal For Allowing Additional Information Within Protein-Coding Sequences

Genome Research , 17:000019706 (2007) [PDF]
- Genome Research: [PDF]
- Nature Reviews Genetics: [PDF]
Nadav Kashtan; Elad Noor; Uri Alon

Varying Environments Can Speed up Evolution

Proceedings of the National Academy of Sciences of the United States of America , 104:000020860 (2007) [PDF]
Merav Parter; Nadav Kashtan; Uri Alon

Environmental Variability and Modularity of Bacterial Metabolic Networks

Bmc Evolutionary Biology , 7:000029750 (2007) [PDF]
Uri Alon

Simplicity in Biology

Nature , 446:000002656 (2007) [PDF]
Ido Amit; Ami Citri; Tal Shay; Yiling Lu; Menachem Katz; Fan Zhang; Gabi Tarcic; Doris Siwak; John Lahad; Jasmine Jacob-Hirsch; Ninette Amariglio; Nora Vaisman; Eran Segal; Gideon Rechavi; Uri Alon; Gordon B. Mills; Eytan Domany; Yosef Yarden

A Module of Negative Feedback Regulators Defines Growth Factor Signaling

Nature Genetics , 39:000002974 (2007) [PDF]
Alon U.

Network Motifs: theory and Experimental Approaches

Nature Reviews Genetics , (2007)
Alon U.

Simplicity in Biology

Nature , (2007)
Amit I., Citri A., Shay T., Lu Y., Katz M., Zhang F., Tarcic G., Siwak D., Lahad J., Jacob-Hirsch J., Amariglio N., Vaisman N., Segal E., Rechavi G., Alon U., Mills G. B., Domany E. & Yarden Y.

A Module of Negative Feedback Regulators Defines Growth Factor Signaling

Nature Genetics , (2007)
Parter M., Kashtan N. & Alon U.

Environmental Variability and Modularity of Bacterial Metabolic Networks

Bmc Evolutionary Biology , (2007)
Rosenfeld N., Young J. W., Alon U., Swain P. S. & Elowitz M. B.

Accurate Prediction of Gene Feedback Circuit Behavior From Component Properties

Molecular Systems Biology , (2007)
Itzkovitz S. & Alon U.

The Genetic Code is Nearly Optimal For Allowing Additional Information Within Protein-Coding Sequences

Genome Research , (2007)
Shinar G., Milo R., Martinez M. R. & Alon U.

Input-Output Robustness in Simple Bacterial Signaling Systems

Proceedings of the National Academy of Sciences of the United States of America , (2007)
Kalisky T., Dekel E. & Alon U.

Cost-Benefit theory and Optimal Design of Gene Regulation Functions

Physical Biology , (2007)
Sigal A., Danon T., Cohen A., Milo R., Geva Zatorsky Z. N., Lustig G., Liron Y., Alon U. & Perzov N.

Generation of a Fluorescently Labeled Endogenous Protein Library in Living Human Cells

Nature Protocols , (2007)
Kashtan N., Noor E. & Alon U.

Varying Environments Can Speed up Evolution

Proceedings of the National Academy of Sciences of the United States of America , (2007)
Shalev Itzkovitz; Ron Milo; Nadav Kashtan; Reuven Levitt; Amir Lahav; Uri Alon

Recurring Harmonic Walks and Network Motifs in Western Music

Advances in Complex Systems , 9:000019710 (2006) [PDF]
Ziv Frankenstein; Uri Alon; Irun R. Cohen

The Immune-Body Cytokine Network Defines a Social Architecture of Cell Interactions

Biology Direct , 1:000013718 (2006) [PDF]
S Mangan; Shalev Itzkovitz; A Zaslaver; Uri Alon

The Incoherent Feed-Forward Loop Accelerates the Response-Time of the Gal System of Escherichia Coli

Journal of Molecular Biology , 356:000025952 (2006) [PDF]
Zaslaver, A; Bren, A; Ronen, M; Itzkovitz, S; Kikoin, I; Shavit, S; Liebermeister, W; Surette, MG; Alon, U

A Comprehensive Library of Fluorescent Transcriptional Reporters For Escherichia Coli

Nature Methods , (2006) [PDF]
Guy Shinar; Erez Dekel; Tsvi Tlusty; Uri Alon

Rules For Biological Regulation Based on Error Minimization

Proceedings of the National Academy of Sciences of the United States of America , 103:000036034 (2006) [PDF]
Zatorsky, Naama Geva Zatorsky; Nitzan Rosenfeld; Shalev Itzkovitz; Ron Milo; Alex Sigal; Erez Dekel; Talia Yarnitzky; Yuvalal Liron; Paz Polak; Galit Lahav; Uri Alon

Oscillations and Variability in the P53 System

Molecular Systems Biology , 2:000015209 (2006) [PDF]
Alex Sigal; Ron Milo; Ariel Cohen; Zatorsky, Naama Geva Zatorsky; Yael Klein; Yuvalal Liron; Nitzan Rosenfeld; Tamar Danon; Natalie Perzov; Uri Alon

Variability and Memory of Protein Levels in Human Cells

Nature , 444:000036445 (2006) [PDF]
A Sigal; Ron Milo; Ayala Cohen; Zatorsky, Naama Geva Zatorsky; Yasmin A. Klein; I Alaluf; N Swerdlin; N Perzov; Tamar Danon; Yuvalal Liron; T Raveh; AE Carpenter; G Lahav; Uri Alon

Dynamic Proteomics in Individual Human Cells Uncovers Widespread Cell-Cycle Dependence of Nuclear Proteins

Nature Methods , 3:000036444 (2006) [PDF]
N Rosenfeld; TJ Perkins; Uri Alon; MB Elowitz; PS Swain

A Fluctuation Method to Quantify in Vivo Fluorescence Data

Biophysical Journal , 91:000032804 (2006) [PDF]
Shalev Itzkovitz; Tsvi Tlusty; Uri Alon

Coding Limits on the Number of Transcription Factors

Bmc Genomics , 7:000019714 (2006) [PDF]
AE Mayo; Yaakov Setty; Shlomo Shavit; A Zaslaver; Uri Alon

Plasticity of the Cis-Regulatory Input Function of a Gene

PLoS Biology , 4:000026523 (2006) [PDF]
Mayo A., Setty Y., Shavit S., Zaslaver A. & Alon U.

Plasticity of the Cis-Regulatory Input Function of a Gene

PLoS Biology , (2006)
Itzkovitz S., Milo R., Kashtan N., Levitt R., Lahav A. & Alon U.

Recurring Harmonic Walks and Network Motifs in Western Music

Advances in Complex Systems , (2006)
Rosenfeld N., Perkins T., Alon U., Elowitz M. & Swain P.

A Fluctuation Method to Quantify in Vivo Fluorescence Data

Biophysical Journal , (2006)
Itzkovitz S., Tlusty T. & Alon U.

Coding Limits on the Number of Transcription Factors

Bmc Genomics , (2006)
Shinar G., Dekel E., Tlusty T. & Alon U.

Rules For Biological Regulation Based on Error Minimization

Proceedings of the National Academy of Sciences of the United States of America , (2006)
Mangan S., Itzkovitz S., Zaslaver A. & Alon U.

The Incoherent Feed-Forward Loop Accelerates the Response-Time of the Gal System of Escherichia Coli

Journal of Molecular Biology , (2006)
Zaslaver, A; Mayo, A; Ronen, M; Alon, U

Optimal Gene Partition Into Operons Correlates With Gene Functional Order

Physical Biology , (2006) [PDF]
Sigal A., Milo R., Cohen A., Geva Zatorsky Z. N., Klein Y. A., Alaluf I., Swerdlin N., Perzov N., Danon T., Liron Y., Raveh T., Carpenter A., Lahav G. & Alon U.

Dynamic Proteomics in Individual Human Cells Uncovers Widespread Cell-Cycle Dependence of Nuclear Proteins

Nature Methods , (2006)
Zaslaver A., Mayo A., Ronen M. & Alon U.

Optimal Gene Partition Into Operons Correlates With Gene Functional Order

Physical Biology , (2006)
Sigal A., Milo R., Cohen A., Geva Zatorsky Z. N., Klein Y., Liron Y., Rosenfeld N., Danon T., Perzov N. & Alon U.

Variability and Memory of Protein Levels in Human Cells

Nature , (2006)
Zaslaver A., Bren A., Ronen M., Itzkovitz S., Kikoin I., Shavit S., Liebermeister W., Surette M. G. & Alon U.

A Comprehensive Library of Fluorescent Transcriptional Reporters For Escherichia Coli

Nature Methods , (2006)
Frankenstein Z., Alon U. & Cohen I. R.

The Immune-Body Cytokine Network Defines a Social Architecture of Cell Interactions

Biology Direct , (2006)
Geva Zatorsky Z. N., Rosenfeld N., Itzkovitz S., Milo R., Sigal A., Dekel E., Yarnitzky T., Liron Y., Polak P., Lahav G. & Alon U.

Oscillations and Variability in the P53 System

Molecular Systems Biology , (2006)
Shalev Itzkovitz; Uri Alon

Subgraphs and Network Motifs in Geometric Networks

Physical Review E , 71:000019705 (2005) [PDF]
Shiraz Kalir; Shmoolik Mangan; Uri Alon

A Coherent Feed-Forward Loop With a Sum Input Function Prolongs Flagella Expression in Escherichia Coli

Molecular Systems Biology , 1:000020395 (2005) [PDF]
Shalev Itzkovitz; R Levitt; N Kashtan; Ron Milo; M Itzkovitz; Uri Alon

Coarse-Graining and Self-Dissimilarity of Complex Networks

Physical Review E , 71:000019709 (2005) [PDF]
Erez Dekel; Uri Alon

Optimality and Evolutionary Tuning of the Expression Level of a Protein

Nature , 436:000010549 (2005) [PDF]
Dekel, E; Alon, U

Optimality and Evolutionary Tuning of the Expression Level of a Protein

Nature , (2005) [PDF]
N Kashtan; Uri Alon

Spontaneous Evolution of Modularity and Network Motifs

Proceedings of the National Academy of Sciences of the United States of America , 102:000020856 (2005) [PDF]
Erez Dekel; S Mangan; Uri Alon

Environmental Selection of the Feed-Forward Loop Circuit in Gene-Regulation Networks

Physical Biology , 2:000010550 (2005) [PDF]
N Rosenfeld; JW Young; Uri Alon; PS Swain; MB Elowitz

Gene Regulation at the Single-Cell Level

Science , 307:000032805 (2005) [PDF]
Itzkovitz S. & Alon U.

Subgraphs and Network Motifs in Geometric Networks

Physical Review E , (2005)
Dekel E. & Alon U.

Optimality and Evolutionary Tuning of the Expression Level of a Protein

Nature , (2005)
Itzkovitz S., Levitt R., Kashtan N., Milo R., Itzkovitz M. & Alon U.

Coarse-Graining and Self-Dissimilarity of Complex Networks

Physical Review E , (2005)
Noga Friedman; S Vardi; M Ronen; Uri Alon; Joel Stavans

Precise Temporal Modulation in the Response of the Sos Dna Repair Network in Individual Bacteria

PLoS Biology , 3:000013976 (2005)
Dekel E., Mangan S. & Alon U.

Environmental Selection of the Feed-Forward Loop Circuit in Gene-Regulation Networks

Physical Biology , (2005)
Kalir S., Mangan S. & Alon U.

A Coherent Feed-Forward Loop With a Sum Input Function Prolongs Flagella Expression in Escherichia Coli

Molecular Systems Biology , (2005)
Rosenfeld N., Young J., Alon U., Swain P. & Elowitz M.

Gene Regulation at the Single-Cell Level

Science , (2005)
Kashtan N. & Alon U.

Spontaneous Evolution of Modularity and Network Motifs

Proceedings of the National Academy of Sciences of the United States of America , (2005)
Friedman N., Vardi S., Ronen M., Alon U. & Stavans J.

Precise Temporal Modulation in the Response of the Sos Dna Repair Network in Individual Bacteria

PLoS Biology , (2005)
N Kashtan; Shalev Itzkovitz; Ron Milo; Uri Alon

Efficient Sampling Algorithm For Estimating Subgraph Concentrations and Detecting Network Motifs

Bioinformatics , 20:000020857 (2004) [PDF]
Yeger-Lotem, E; Sattath, S; Kashtan, N; Itzkovitz, S; Milo, R; Pinter, RY; Alon, U; Margalit, H

Network Motifs in Integrated Cellular Networks of Transcription-Regulation and Protein-Protein Interaction

Proceedings of the National Academy of Sciences of the United States of America , (2004)
Shalev Itzkovitz; Ron Milo; N Kashtan; MEJ Newman; Uri Alon

Reply to &Quot;Comment on 'Subgraphs in Random Networks' &Quot;

Physical Review E , 70:000019711 (2004)
Ron Milo; Shalev Itzkovitz; N Kashtan; R Levitt; S Shen-Orr; I Ayzenshtat; Michal Sheffer; Uri Alon

Superfamilies of Evolved and Designed Networks

Science , 303:000027275 (2004) [PDF]
N Kashtan; Shalev Itzkovitz; Ron Milo; Uri Alon

Topological Generalizations of Network Motifs

Physical Review E , 70:000020858 (2004) [PDF]
Ron Milo; Shalev Itzkovitz; N Kashtan; R Levitt; Uri Alon

Response to Comment on &Quot;Network Motifs: Simple Building Blocks of Complex Networks&Quot; and &Quot;Superfamilies of Evolved and Designed Networks&Quot;

Science , 305:000027274 (2004)
Kalir S, Alon U

Using a Quantitative Blueprint to Reprogram the Dynamics of the Flagella Gene Network

Cell , (2004) [PDF]
- See also cover page: URL.
- See also Preview article: [PDF]
Zaslaver, A; Mayo, AE; Rosenberg, R; Bashkin, P; Sberro, H; Tsalyuk, M; Surette, MG; Alon, U

Just-in-Time Transcription Program in Metabolic Pathways

Nature Genetics , (2004) [PDF]
See features in:
- Nature Reviews Genetics : [PDF]
- Journal of Cell Biology : [PDF]
G Lahav; N Rosenfeld; A Sigal; Zatorsky, Naama Geva Zatorsky; AJ Levine; MB Elowitz; Uri Alon

Dynamics of the P53-Mdm2 Feedback Loop in Individual Cells

Nature Genetics , 36:000023011 (2004) [PDF]
Friedman, N; Vardi, S; Ronen, M; Alon, U; Stavans, J

Precise Modulations in the Sos Dna Repair System Observed in Individual Escherichia Coli Cells.

Abstracts of Papers of the American Chemical Society , (2004)
Milo, R; Itzkovitz, S; Kashtan, N; Levitt, R; Alon, U

Response to Comment on &Quot;Network Motifs: Simple Building Blocks of Complex Networks&Quot; and &Quot;Superfamilies of Evolved and Designed Networks&Quot;

Science , (2004)
Itzkovitz S., Milo R., Kashtan N., Newman M. & Alon U.

Reply to &Quot;Comment on 'Subgraphs in Random Networks' &Quot;

Physical Review E , (2004)
Milo R., Itzkovitz S., Kashtan N., Levitt R. & Alon U.

Response to Comment on &Quot;Network Motifs: Simple Building Blocks of Complex Networks&Quot; and &Quot;Superfamilies of Evolved and Designed Networks&Quot;

Science , (2004)
Kashtan N., Itzkovitz S., Milo R. & Alon U.

Efficient Sampling Algorithm For Estimating Subgraph Concentrations and Detecting Network Motifs

Bioinformatics , (2004)
Milo R., Itzkovitz S., Kashtan N., Levitt R., Shen-Orr S., Ayzenshtat I., Sheffer M. & Alon U.

Superfamilies of Evolved and Designed Networks

Science , (2004)
Kashtan N., Itzkovitz S., Milo R. & Alon U.

Topological Generalizations of Network Motifs

Physical Review E , (2004)
Lahav G., Rosenfeld N., Sigal A., Geva Zatorsky Z. N., Levine A., Elowitz M. & Alon U.

Dynamics of the P53-Mdm2 Feedback Loop in Individual Cells

Nature Genetics , (2004)
Yeger-Lotem E., Sattath S., Kashtan N., Itzkovitz S., Milo R., Pinter R., Alon U. & Margalit H.

Network Motifs in Integrated Cellular Networks of Transcription-Regulation and Protein-Protein Interaction

Proceedings of the National Academy of Sciences of the United States of America , (2004)
Friedman N., Vardi S., Ronen M., Alon U. & Stavans J.

Precise Modulations in the Sos Dna Repair System Observed in Individual Escherichia Coli Cells

Abstracts of Papers of the American Chemical Society , (2004)
Zaslaver A., Mayo A., Rosenberg R., Bashkin P., Sberro H., Tsalyuk M., Surette M. & Alon U.

Just-in-Time Transcription Program in Metabolic Pathways

Nature Genetics , (2004)
Itzkovitz S, Milo R, Kashtan N, Ziv G, Alon U.

Subgraphs in Random Networks.

Phys Rev e Stat Nonlin Soft Matter Phys , (2003) [PDF]
S Mangan; Uri Alon

Structure and Function of the Feed-Forward Loop Network Motif

Proceedings of the National Academy of Sciences of the United States of America , 100:000025951 (2003) [PDF]
S Mangan; A Zaslaver; Uri Alon

The Coherent Feedforward Loop Serves as a Sign-Sensitive Delay Element in Transcription Networks

Journal of Molecular Biology , 334:000025953 (2003)
N Rosenfeld; Uri Alon

Response Delays and the Structure of Transcription Networks

Journal of Molecular Biology , 329:000032802 (2003) [PDF]
Yaakov Setty; AE Mayo; MG Surette; Uri Alon

Detailed Map of a Cis-Regulatory Input Function

Proceedings of the National Academy of Sciences of the United States of America , 100:000034976 (2003) [PDF]
Mangan S., Zaslaver A. & Alon U.

The Coherent Feedforward Loop Serves as a Sign-Sensitive Delay Element in Transcription Networks

Journal of Molecular Biology , (2003)
Itzkovitz S., Milo R., Kashtan N., Ziv G. & Alon U.

Subgraphs in Random Networks

Physical Review E , (2003)
Uri Alon

Biological Networks: the Tinkerer as an Engineer

Science , 301:000002649 (2003) [PDF]
A Rikanati; Uri Alon; D Shvarts

Vortex-Merger Statistical-Mechanics Model For the Late Time Self-Similar Evolution of the Kelvin-Helmholtz Instability

Physics of Fluids , 15:000032317 (2003)
Alon U.

Biological Networks: the Tinkerer as an Engineer

Science , (2003)
Rikanati A., Alon U. & Shvarts D.

Vortex-Merger Statistical-Mechanics Model For the Late Time Self-Similar Evolution of the Kelvin-Helmholtz Instability

Physics of Fluids , (2003)
Rosenfeld N. & Alon U.

Response Delays and the Structure of Transcription Networks

Journal of Molecular Biology , (2003)
Setty Y., Mayo A., Surette M. & Alon U.

Detailed Map of a Cis-Regulatory Input Function

Proceedings of the National Academy of Sciences of the United States of America , (2003)
Mangan S. & Alon U.

Structure and Function of the Feed-Forward Loop Network Motif

Proceedings of the National Academy of Sciences of the United States of America , (2003)
SS Shen-Orr; Ron Milo; S Mangan; Uri Alon

Network Motifs in the Transcriptional Regulation Network of Escherichia Coli

Nature Genetics , 31:000035830 (2002) [PDF]
Shen-Orr, SS; Milo, R; Mangan, S; Alon, U

Network Motifs in the Transcriptional Regulation Network of Escherichia Coli

Nature Genetics , (2002)
N Rosenfeld; MB Elowitz; Uri Alon

Negative Autoregulation Speeds the Response Times of Transcription Networks

Journal of Molecular Biology , 323:000032803 (2002) [PDF]
M Ronen; R Rosenberg; BI Shraiman; Uri Alon

Assigning Numbers to the Arrows: Parameterizing a Gene Regulation Network by Using Accurate Expression Kinetics

Proceedings of the National Academy of Sciences of the United States of America , 99:000032680 (2002) [PDF]

See also JCB news: [PDF]
Milo R., Shen-Orr S., Itzkovitz S., Kashtan N., Chklovskii D. & Alon U.

Network Motifs: Simple Building Blocks of Complex Networks

Science , (2002)
Ronen M., Rosenberg R., Shraiman B. & Alon U.

Assigning Numbers to the Arrows: Parameterizing a Gene Regulation Network by Using Accurate Expression Kinetics

Proceedings of the National Academy of Sciences of the United States of America , (2002)
Rosenfeld N., Elowitz M. & Alon U.

Negative Autoregulation Speeds the Response Times of Transcription Networks

Journal of Molecular Biology , (2002)
Shen-Orr S., Milo R., Mangan S. & Alon U.

Network Motifs in the Transcriptional Regulation Network of Escherichia Coli

Nature Genetics , (2002)
Shiraz Kalir; J McClure; K Pabbaraju; C Southward; M Ronen; S Leibler; MG Surette; Uri Alon

Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics From Living Bacteria

Science , 292:000020396 (2001) [PDF]
Kalir S., McClure J., Pabbaraju K., Southward C., Ronen M., Leibler S., Surette M. & Alon U.

Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics From Living Bacteria

Science , (2001)
Oron D., Arazi L., Kartoon D., Rikanati A., Alon U. & Shvarts D.

Dimensionality Dependence of the Rayleigh-Taylor and Richtmyer-Meshkov Instability Late-Time Scaling Laws

Physics of Plasmas , (2001)
Notterman DA, Alon U, Sierk AJ, Levine AJ.

Transcriptional Gene Expression Profiles of Colorectal Adenoma, Adenocarcinoma, and Normal Tissue Examined by Oligonucleotide Arrays

Cancer Res. , (2001)
Barkai N, Alon U, Leibler S

Robust Amplification in Adaptive Signal Transduction Networks

Comptes Rendus de l'AcadéMie Des Sciences - Series iv - Physics , (2001) [PDF]
Dan Oron; Lior Arazi; D Kartoon; A Rikanati; Uri Alon; D Shvarts

Dimensionality Dependence of the Rayleigh-Taylor and Richtmyer-Meshkov Instability Late-Time Scaling Laws

Physics of Plasmas , 8:000029400 (2001)
RL Bar-Or; R Maya; LA Segel; Uri Alon; AJ Levine; Moshe Oren

Generation of Oscillations by the P53-Mdm2 Feedback Loop: a theoretical and Experimental Study

Proceedings of the National Academy of Sciences of the United States of America , 97:000005029 (2000)
Bar-Or R., Maya R., Segel L., Alon U., Levine A. & Oren M.

Generation of Oscillations by the P53-Mdm2 Feedback Loop: a theoretical and Experimental Study

Proceedings of the National Academy of Sciences of the United States of America , (2000)
Sadot O., Erez L., Oron D., Erez G., Ben‐Dor G., Alon U., Levin L. A. & Shvarts D.

Studies on the Nonlinear Evolution of the Richtmyer‐Meshkov Instability

Astrophysical Journal, Supplement Series , (2000)
Staropoli J. & Alon U.

Computerized Analysis of Chemotaxis at Different Stages of Bacterial Growth

Biophysical Journal , (2000)
Rikanati A., Oron D., Alon U. & Shvarts D.

Statistical Mechanics Merger Model For Hydrodynamic Instabilities

Astrophysical Journal, Supplement Series , (2000)
Rikanati, A.; Oron, D.; Alon, U.; Shvarts, D.

Statistical Mechanics Merger Model For Hydrodynamic Instabilities

The Astrophysical Journal Supplement Series , (2000)
Sadot O, Erez L, Oron D, Erez G, Ben-Dor G, Alon U, Levin LA, Shvarts D

Studies on the Nonlinear Evolution of the Richtmyer-Meshkov Instability

The Astrophysical Journal Supplement Series , (2000)
JF Staropoli; Uri Alon

Computerized Analysis of Chemotaxis at Different Stages of Bacterial Growth

Biophysical Journal , 78:000037423 (2000)
Alon U, Surette MG, Barkai N, Leibler S.

Robustness in Bacterial Chemotaxis

Nature , (1999) [PDF]
Alon U, Barkai N, Notterman DA, Gish K, Ybarra S, Mack D, Levine AJ.

Broad Patterns of Gene Expression Revealed by Clustering Analysis of Tumor and Normal Colon Tissues Probed by Oligonucleotide Arrays.

Proc Natl Acad Sci u s a , (1999) [PDF]
ORON D., SADOT O., SREBRO Y., RIKANATI A., YEDVAB Y., ALON U., EREZ L., EREZ G., BEN-DOR G., LEVIN L., OFER D. & SHVARTS D.

Studies in the Nonlinear Evolution of the Rayleigh–Taylor and Richtmyer–Meshkov Instabilities and their Role in Inertial Confinement Fusion

Laser and Particle Beams , (1999)
Oron D, Sadot O, Srebro Y, Rikanati A, Yedvab Y, Alon U, Erez L, Erez G, Ben-Dor G, Levin LA, Ofer D, Shvarts D

Studies in the Nonlinear Evolution of the Rayleigh–Taylor and Richtmyer–Meshkov Instabilities and their Role in Inertial Confinement Fusion

Laser and Particle Beams , (1999)
Alon U., Surette M. G., Barkai N. & Leibler S.

Robustness in Bacterial Chemotaxis

Nature , (1999)
Uri Alon; MR Evans; H Hinrichsen; David Mukamel

Smooth Phases, Roughening Transitions, and Novel Exponents in One-Dimensional Growth Models

Physical Review E , 57:000002658 (1998)
Alon U., Evans M., Hinrichsen H. & Mukamel D.

Smooth Phases, Roughening Transitions, and Novel Exponents in One-Dimensional Growth Models

Physical Review E , (1998)
Sadot O., Erez L., Alon U., Oron D., Levin L. A., Erez G., Ben-Dor G. & Shvarts D.

Study of Nonlinear Evolution of Single-Mode and Two-Bubble Interaction Under Richtmyer-Meshkov Instability

Physical Review Letters , (1998)
Alon U, Camarena L, Surette M G, Aguera y Arcas B, Liu Y, Leibler S, and Stock J B

Response Regulator Output in Bacterial Chemotaxis.

Embo j , (1998)
Oron D., Alon U. & Shvarts D.

Scaling Laws of the Rayleigh–Taylor Ablation Front Mixing Zone Evolution in Inertial Confinement Fusion

Physics of Plasmas , (1998)
Rikanati, A.; Alon, U.; Shvarts, D.

Vortex Model For the Nonlinear Evolution of the Multimode Richtmyer-Meshkov Instability at Low Atwood Numbers

Phys. Rev. e , (1998)
Sadot D, Alon U, Shvarts D

Scaling Laws of the Rayleigh–Taylor Ablation Front Mixing Zone Evolution in Inertial Confinement Fusion

Physics of Plasmas , (1998)
Sadot O, Erez L, Alon U, Oron O, Levin LA, Erez G, Ben-Dor G, Shvarts D

Study of Nonlinear Evolution of Single-Mode and Two-Bubble Interaction Under Richtmyer-Meshkov Instability

Phys. Rev. Lett. , (1998)
Uri Alon; David Mukamel

Gel Electrophoresis and Diffusion of Ring-Shaped DNA

Physical Review E , 55:000002660 (1997)
Alon U. & Mukamel D.

Gel Electrophoresis and Diffusion of Ring-Shaped DNA

Physical Review E , (1997)
Uri Alon; MR Evans; H Hinrichsen; David Mukamel

Roughening Transition in a One-Dimensional Growth Process

Physical Review Letters , 76:000002657 (1996)
D Ofer; Uri Alon; D Shvarts; RL McCrory; CP Verdon

Modal Model For the Nonlinear Multimode Rayleigh-Taylor Instability

Physics of Plasmas , 3:000029072 (1996)
Alon U., Evans M., Hinrichsen H. & Mukamel D.

Roughening Transition in a One-Dimensional Growth Process

Physical Review Letters , (1996)
Ofer D., Alon U., Shvarts D., McCrory R. & Verdon C.

Modal Model For the Nonlinear Multimode Rayleigh-Taylor Instability

Physics of Plasmas , (1996)
Hecht J, Ofer D, Alon U, Shvarts D, Orszag SA, McCrory RL

Three-Dimensional Simulations and Analysis of the Nonlinear Stage of the Rayleigh-Taylor Instability

Laser and Particle Beams , (1995)
Shvarts D, Alon U, Ofer D, McCrory RL, Verdon CP

Nonlinear Evolution of Multimode Rayleigh–Taylor Instability in Two and Three Dimensions

Physics of Plasmas , (1995)
Alon U, Hecht J, Ofer D, Shvarts D

Power Laws and Similarity of Rayleigh-Taylor and Richtmyer-Meshkov Mixing Fronts at All Density Ratios

Phys. Rev. Lett. , (1995)
D SHVARTS; Uri Alon; D OFER; RL MCCRORY; CP VERDON

Nonlinear Evolution of Multimode Rayleigh-Taylor Instability in 2 and 3 Dimensions

, :000036391 (1995)
SHVARTS D., Alon U., OFER D., MCCRORY R. & VERDON C.

Nonlinear Evolution of Multimode Rayleigh-Taylor Instability in 2 and 3 Dimensions

Physics of Plasmas , (1995)
Jacob Hecht J, Alon U, Shvarts D

Potential Flow Models of Rayleigh–Taylor and Richtmyer–Meshkov Bubble Fronts

Physics of Fluids , (1994)
Alon U, Hecht J, Mukamel D, Shvarts D

Scale Invariant Mixing Rates of Hydrodynamically Unstable Interfaces

Physical Review Letters , (1994)
Uri Alon; J HECHT; David Mukamel; D SHVARTS

Scale-Invariant Mixing Rates of Hydrodynamically Unstable Interfaces

Physical Review Letters , 72:000002659 (1994)
J HECHT; Uri Alon; D SHVARTS

Potential Flow Models of Rayleigh-Taylor and Richtmyer-Meshkov Bubble Fronts

Physics of Fluids , 6:000018357 (1994)
HECHT J., Alon U. & SHVARTS D.

Potential Flow Models of Rayleigh–Taylor and Richtmyer–Meshkov Bubble Fronts

Physics of Fluids , (1994)
Alon U., HECHT J., Mukamel D. & SHVARTS D.

Scale Invariant Mixing Rates of Hydrodynamically Unstable Interfaces

Physical Review Letters , (1994)
Alon U, Shvarts D, Mukamel D

Scale Invariant Regime in Rayleigh-Taylor Bubble Front Dynamics

Phys. Rev. e , (1993)
Uri Alon; D SHVARTS; David Mukamel

Scale-Invariant Regime in Rayleigh-Taylor Bubble-Front Dynamics

Physical Review E , 48:000002661 (1993)
Alon U., SHVARTS D. & Mukamel D.

Scale-Invariant Regime in Rayleigh-Taylor Bubble-Front Dynamics

Physical Review E , (1993)
Drory A., Balberg I., Alon U. & Berkowitz B.

Analytic Derivation of Percolation Thresholds in Anisotropic Systems of Permeable Objects

Phys. Rev. e , (1991)
Drory A, Balberg I, Alon U, Berkowitz B

Analytic Derivation of Percolation Thresholds in Anisotropic Systems of Permeable Objects

Physical Review A , (1991)
U Alon U, Balberg I, Drory A

New, Heuristic, Percolation Criterion For Continuum Systems

Phys. Rev. Lett. , (1991)
Alon U, Drory A, Balberg I

Systematic Derivation of Percolation Thresholds in Continuum Systems

Phys. Rev. a , (1990)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)
, (0)