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September 12, 2014
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Date:08ThursdayDecember 2022Conference
The annual IsSDB symposium: Imaging development
More information Time 08:00 - 08:00Location The David Lopatie Conference CentreChairperson Oren Schuldiner -
Date:08ThursdayDecember 2022Lecture
Time Domain and High Frequency DNP Experiments
More information Time 09:30 - 10:30Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Robert G. Griffin
Dept. Chemistry, MITOrganizer Clore Institute for High-Field Magnetic Resonance Imaging and SpectroscopyContact Abstract Show full text abstract about Dynamic nuclear polarization (DNP) has become an invaluable ...» Dynamic nuclear polarization (DNP) has become an invaluable tool to enhance sensitivity of
magic angle spinning (MAS) NMR, enabling the study of biomolecules and materials which are
otherwise intractable. In this presentation we explore some new aspects of time domain DNP
experiments and their applications.
One of the main thrusts of DNP was to provide increased sensitivity for MAS spectroscopy of
membrane and amyloid protein experiments. A problem frequently encountered in these
experiments is the broadened resonances that occur at low temperatures when motion is quenched.
In some cases it is clear that the proteins are homogeneously broadened, and therefore that higher
Zeeman fields and faster spinning is required to recall the resolution. We show this is the case for
MAS DNP spectra of Ab1-42 amyloid fibrils where the resolution at 100 K is identical to that at room
temperature. Furthermore, we compare the sensitivity of DNP and 1H detected experiments and find
that DNP, even with a modest ℇ=22, is ~x6.5 times more sensitive.
We have also investigated the frequency swept-integrated solid effect (FS-ISE) and two recently
discovered variants – the stretched solid effect (SSE) and the adiabatic solid effect (ASE). We find
that the latter two experiments can give up to a factor of ~2 larger enhancement than the FS-ISE.
The SSE and ASE experiments should function well at high fields.
Finally, we discuss two new instrumental advances. First, a frequency swept microwave source
that permits facile investigation of field profiles. It circumvents the need for a B0 sweep coil and the
compromise of field homogeneity and loss of helium associated with such studies. This
instrumentation has permitted us to elucidate the polarization transfer mechanism of the Overhauser
effect, and also revealed interesting additional couplings (ripples) in field profiles of cross effect
polarizing agents. Second, to improve the spinning frequency in DNP experiments, we have
developed MAS rotors laser machined from single crystal diamonds. Diamond rotors should permit
higher spinning frequencies, improved microwave penetration, and sample cooling. -
Date:08ThursdayDecember 2022Lecture
The importance of deciphering natural processes in sites: understanding sedimentary structures and fabrics
More information Time 13:30 - 13:30Location Benoziyo Building for Biological Science, Room 590Lecturer Panagiotis Karkanas
Malcolm H. Weiner Laboratory for Archaeological Science, American School of Classical Studies in Athens, GreeceContact -
Date:11SundayDecember 202215ThursdayDecember 2022Conference
MPGD 2021
More information Time 08:00 - 08:00Chairperson Shikma BresslerHomepage -
Date:11SundayDecember 2022Lecture
GPR75-20-HETE pairing: A novel therapeutic target for cardiometabolic diseases
More information Time 15:00 - 16:00Location Lopatie Comparative medicine buildingLecturer Prof. Michal Laniado-Schwartzman
Department of Pharmacology New York Medical College School of MedicineContact -
Date:12MondayDecember 2022Colloquia
Mapping protein conformations using EPR/DEER spectroscopy
More information Time 11:00 - 12:15Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Stefan Stoll
Department of Chemistry, University of WashingtonOrganizer Faculty of ChemistryHomepage Contact Abstract Show full text abstract about For many proteins, flexibility and motion form the basis of ...» For many proteins, flexibility and motion form the basis of their function. In our lab, we quantify the conformational landscapes of proteins and their changes upon interaction with external effectors. Using Double Electron-Electron Resonance (DEER) spectroscopy, a form of Electron Paramagnetic Resonance (EPR) spectroscopy, we directly measure absolute distances and distance distributions between pairs of spin labels within proteins. From the data, we build quantitative structural and energetic models of the protein's intrinsic flexibility, conformational substates, and the structural changes induced by ligands and binding partners. In this talk, I present some of our recent results on the allosteric regulation of ion channels, the function of de novo designed protein switches, and novel methods for measuring protein conformations directly in their native cellular environment. -
Date:12MondayDecember 2022Lecture
Seminar for Thesis defense
More information Time 15:30 - 16:30Title “Deciphering the role of translation supply and demand in human physiology”Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Noa Aharon-Hefetz Organizer Department of Molecular GeneticsContact -
Date:13TuesdayDecember 2022Lecture
Flip to Insert: The role of helix flipping in membrane proteins folding
More information Time 10:00 - 11:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Dr. Hadas Zehavi
Dept. of Biomolecular Sciences-WISOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Helical membrane proteins make up a quarter of the proteome ...» Helical membrane proteins make up a quarter of the proteome in every living organism, performing a huge array of essential functions. The transmembrane helices (TMHs) of these proteins are typically inserted co-translationally, giving each protein its unique membrane topology. This topology is assumed to be constrained by the membrane and remain unchanged after translation. However, our results suggest that some TMHs are surprisingly dynamic, and can flip across the membrane. This unexpected conformational freedom might mediate important biological roles in the folding mechanisms of membrane proteins. -
Date:13TuesdayDecember 2022Lecture
How movement regulates defensive behaviours in a social context
More information Time 12:30 - 12:30Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Marta Moita
Behavioural Neuroscience Champalimaud Center, LisbonOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Our work concerns the general problem of adaptive behavior i...» Our work concerns the general problem of adaptive behavior in response to predatory threats, and of the neural mechanisms underlying a choice between strategies. Interacting predators and prey tightly regulate their motion, timing with precision when to hold, attack or escape. Motion cues are thus paramount in these interactions. Speed and (un)predictability have shaped the evolution of sensory and motor systems, the elucidation of which a great deal of research has been devoted. Much less attention has been paid to the role of motion as a social cue of threat or safety. We and others have found that prey animals use the movement of their neighbors to regulate their defensive responses. We have studied social regulation of freezing in rodents and found that rats use cessation of movement evoked sound, resulting from freezing, as a cue of danger. In addition, auto-conditioning, whereby rats learn the association between shock and their own freezing, during prior experience with shock, facilitates the use of freezing by others as an alarm cue. To further explore the social regulation of defensive responses we resorted to the use fruit flies as it easily allows testing of groups of varying sizes, the collection of large data sets and genetic access to individual neuronal types. We established that fruit flies in response to visual looming stimuli, simulating a large object on collision course, make rapid freeze/flee choices accompanied by lasting changes in the fly’s internal state, reflected in altered cardiac activity. Freezing in flies is also strongly modulated by the movement of surrounding neighbours. In contrast with rodents that use auditory cues, female flies use visual motion processed by visual projection neurons. Finally, I will discuss more preliminary findings suggesting that there are multiple states of freezing as measured by muscle activity in the fly legs. Having established the fly as a model to study freezing/fleeing decisions, we are in a great position to perform large scale integrative studies on the organization of defensive behaviours.
Short Bio
Marta Moita received her BSc degree in Biology at the University of Lisbon, in 1995. As part of Gulbenkian’s PhD programme in Biology and Medicine she developed her thesis work, on the encoding by place cells of threat conditioning under the supervision of Prof. Joseph Ledoux, at the New York University (1997-2002). In 2002, Marta Moita worked as a postdoctoral fellow in Dr. Tony Zador’s laboratory, at the Cold Spring Harbor Laboratory, to study the role of auditory cortex in sound discrimination. In 2004, she became a principal investigator, leading the Behavioral Neuroscience lab, at the Instituto Gulbenkian de Ciência. In 2008 her group joined the starting Champalimaud Neuroscience program. In 2018 and 2019 Marta Moita served as Deputy Director of Champalimaud Research. Her lab is primarily interested in understanding the mechanisms of behavior. To this end, the lab has focused on behaviors that are crucial for survival and present in a wide range of species, namely defensive behaviors triggered by external threats. Using a combination of state-of-the-art tools in Neuroscience (initially using rats and currently using fruit flies) and detailed quantitative descriptions of behavior, her lab aims to understand how contextual cues guide the selection between different defensive strategies and how the chosen defensive behavior and accompanying physiological responses are instantiated.
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Date:13TuesdayDecember 2022Lecture
Using genomics to investigate radiation-related thyroid cancer following the Chernobyl accident in 1986
More information Time 14:00 - 15:00Location Max and Lillian Candiotty BuildingLecturer Stephen J. Chanock, M.D.
Director Division of Cancer Epidemiology & Genetics National Cancer Institute Maryland, USAOrganizer Dwek Institute for Cancer Therapy ResearchContact -
Date:14WednesdayDecember 2022Lecture
Engineering Imaging Technologies and Discovering Biomarkers to Characterize Disease States
More information Time 11:00 - 12:00Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Barbara S. Smith
School of Biological and Health Systems Engineering, Arizona State UniversityOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Neurodegenerative diseases are often clinically, genetically...» Neurodegenerative diseases are often clinically, genetically, and pathologically heterogeneous. The clinical impact of understanding heterogeneity is perhaps best observed in cancer, where subtype-specificity within diagnoses, prognoses, and treatments have had a critical impact on clinical decision making and patient outcomes. A better understanding of how mechanisms are related to or drive heterogeneity within diseases such as Amyotrophic Lateral Sclerosis (ALS), will have a direct impact on patient outcomes, with a conscious effort to move towards precision medicine and targeted therapeutics for patients, which are urgently needed. For this reason, neuroscientists and oncologists have long aspired to achieve an understanding of the mechanisms governing pathophysiology. Our interdisciplinary work integrates technologies across a wide range of fields to surpass the current barriers in understanding disease pathophysiology. This talk will highlight a series of optical and photoacoustic imaging tools as well as multi-omics analysis that have been developed and studied in Dr. Smith’s lab to address the urgent need for non-invasive cancer detection and the characterization of neurological disorders. Through this work, we aim to develop translational technologies and methodologies to better characterize, understand, and detect disease pathogenesis, beyond current capabilities. -
Date:15ThursdayDecember 2022Colloquia
Physics Hybrid Colloquium
More information Time 11:15 - 12:30Title Review of high energy density physics driven by advanced pulsed-power systemsLocation Edna and K.B. Weissman Building of Physical SciencesLecturer Dr. Daniel B. Sinars
Sandia National Laboratories, USAOrganizer Faculty of PhysicsContact Abstract Show full text abstract about Pulsed power accelerators compress electrical energy in spac...» Pulsed power accelerators compress electrical energy in space and time to provide versatile experimental platforms for high energy density and inertial confinement fusion science. The 80-TW “Z” pulsed power facility at Sandia National Laboratories is the largest pulsed power device in the world today. Z discharges up to 22 MJ of energy stored in its capacitor banks into a current pulse that rises in 100 ns and peaks at a current as high as 30 MA in mm-scale targets. Considerable progress has been made over the last decade in the use of pulsed power as a precision scientific tool and for achieving extremely high-energy-density conditions. This talk reviews fundamental science research at Sandia in inertial confinement fusion, dynamic high-pressure material science, intense x-ray radiation science, and pulsed power technology. I will conclude with a few remarks on a Next Generation Pulsed Power project that the U.S. government is considering at this time. Comments will be given on the last-week announcement on the “major scientific breakthrough in Fusion ignition”.
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Date:15ThursdayDecember 2022Lecture
One possible reason why the petrous bone preserves ancient DNA relatively well is that it contains high concentrations of bone cells
More information Time 13:30 - 13:30Location Room 590, Benoziyo Building for Biological Science, Weizmann Institute of ScienceLecturer Jamal Ibrahim
The Scientific Archaeology Unit, Weizmann Institute of Science, IsraelContact -
Date:18SundayDecember 2022Lecture
Structure and Dynamics of Polyelectrolyte Complex Network under Electric Field
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Prof. Eyal Zussman
Dept Mechanical Engineering, TechnionOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Electrostatic interactions between polyelectrolyte (PE) ch...»
Electrostatic interactions between polyelectrolyte (PE) charges and dissociated counterions provide PEs with intriguing properties and significantly determine their conformation and dynamics. This research shows how weak PE chains form a global network when they are oppositely charged and how strong electric fields lead to orientational order. The development of controlled drug release and responsive structures is demonstrated by the use of ordered PE with tunable intermolecular interactions.
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Date:18SundayDecember 2022Lecture
Estimating Climate Change Mitigation Potential Through Dryland Forestation Actions
More information Time 13:00 - 14:00Title SAERI - Sustainability and Energy Research Initiative Seminar SeriesLocation Nella and Leon Benoziyo Building for Biological SciencesLecturer Shani Rohatyn-Blitz, PhD
Coordinator for Research and Foreign Relations Forestry Division, KKL-JNF IsraelOrganizer Weizmann School of ScienceContact -
Date:18SundayDecember 2022Lecture
From atomic imaging and functionalizing of inorganic 2D materials to molecular imaging of organic 2D materials
More information Time 14:00 - 15:00Location Perlman Chemical Sciences BuildingLecturer Prof. Ute Kaiser
Ulm University, Materials Science Electron MicroscopyOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about In this lecture, the theoretical and technical base for atom...» In this lecture, the theoretical and technical base for atomic imaging of defects in inorganic 2D materials in the low-voltage transmission electron microscope SALVE will be discussed. Atomic defects can significantly change the properties of the material: Using 2D-TMDs and 2D-TMPTs and corresponding heterostructures, this is shown experimentally and verified by corresponding quantum mechanical calculations. We also use the electron beam for the targeted formation of new phases in the inorganic 2D matrix. Since the interaction cross-sections of electron beam and organic 2D materials differ strongly from the inorganic case, we explore highest-resolution imaging conditions for 2D polymers and various 2D MOFs and show that there is a trend towards lower voltage TEM as well. We may conclude that low-voltage TEM and low-dimensional materials are just made for each other. -
Date:19MondayDecember 2022Conference
EKARD symposium 2022
More information Time 08:00 - 18:00Chairperson Yardena Samuels -
Date:19MondayDecember 2022Lecture
A spectral T^{+}A^{-}G^{+} of episodic memory
More information Time 13:00 - 14:00Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Michael J. Kahana
Edmund J. and Louise W. Kahn Term Professor of Psychology University of PennsylvaniaOrganizer Department of Biomolecular SciencesContact -
Date:20TuesdayDecember 2022Lecture
A direct MS approach for identifying damaged DNA in cancerous cells
More information Time 10:00 - 11:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Joanna Stimpson
Dept. of Biomolecular Sciences-WISOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about DNA can be damaged by chemicals in our surroundings, and occ...» DNA can be damaged by chemicals in our surroundings, and occurs at the nucleophilic sites on the strand. Of particular interest is alkylation at the O6-position of guanine, which goes on to cause G:C -> A:T mutations. These mutations cause genomic instability and are linked to the onset of colorectal cancer (CRC). Identifying the extent and diversity of O6-guanine alkylation informs us on the exposure cancer patients have undergone.
Here we have developed a mass spectrometry based approached to identify damaged DNA. The method is based on the DNA repair protein MGMT, which directly removes alkylation from O6-alkyl guanine. MGMT can be used to probe the type and extent of O6-alkylation.
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Date:20TuesdayDecember 2022Lecture
Extracellular Matrix Mechanics in Disease States
More information Time 14:00 - 15:00Location Gerhard M.J. Schmidt Lecture HallLecturer Dr. Joshua M. Grolman
Materials Science and Engineering Technion - Israel Institute of TechnologyOrganizer Department of Chemical and Structural BiologyContact
