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September 12, 2014

  • Date:27SundayNovember 2022

    Chemical and Biological Physics Guest Seminar

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    Time
    11:00 - 11:00
    Title
    Universal Principles of Tissues in Health and Disease
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerDr Miri Adler
    Yale University
    Organizer
    Department of Chemical and Biological Physics
    Contact
    AbstractShow full text abstract about Our organs and tissues are made of different cell types that...»
    Our organs and tissues are made of different cell types that communicate with each other in order to achieve joint functions. However, little is known about the universal principles of these interactions. For example, how do cell interactions maintain proper cellular composition, spatial organization and collective division of labor in tissues?
    And what is the role of these interactions in tissue-level diseases where the healthy balance in the tissue is disrupted such as excess scarring following injury known as fibrosis?
    In this talk, I will discuss my work in developing theoretical frameworks that explore the collective behavior of cells that emerges from cell-cell communication circuits.
    I will present work on the cell circuit that controls tissue repair following injury and how it may lead to fibrosis.
    I will discuss a new approach to explore how cell interactions can be used to provide symmetry breaking and optimal division of labor in tissues, and how this approach can help to interpret complex patterns in real data.
    I will introduce a new concept in complex networks – network hyper-motifs, where we explore how small recurring patterns (network motifs) are integrated within large networks, and how these larger patterns (hyper-motifs) can give rise to emergent dynamic properties.
    Finally, I will conclude with future directions that are aimed at revealing principles that unify our understanding of different tissues.
    Lecture
  • Date:29TuesdayNovember 2022

    iSCAR seminar

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    Time
    09:00 - 10:00
    Location
    Max and Lillian Candiotty Building
    LecturerDr. Shiri Gur-Cohen
    Organizer
    Department of Immunology and Regenerative Biology
    Contact
    Lecture
  • Date:29TuesdayNovember 2022

    The importance of being rhythmic: Days and nights of pancreatic islet cells

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    Time
    10:00 - 11:00
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerProf. Charna Dibner
    Faculty of Medicine, University of Geneva, Switzerland
    Organizer
    Department of Biomolecular Sciences
    Contact
    Lecture
  • Date:29TuesdayNovember 2022

    Organization of long-term behavior and individuality across developmental timescales

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    Time
    12:30 - 12:30
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. Shay Stern
    Faculty of Biology TECHNION Haifa
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Animals generate complex patterns of behavior across life th...»
    Animals generate complex patterns of behavior across life that can be modified over days, months, or even years. Across these long timescales individuals within the same population may show stereotyped behaviors, but also unique behaviors that distinguish them from each other. How are long-term patterns of behavior organized and regulated across development? And what are the underlying processes that establish and modify individual-to-individual behavioral variation?
    By utilizing parallel long-term behavioral monitoring at high spatiotemporal resolution of multiple C. elegans individuals across their complete development time we demonstrate temporal regulation of behavioral plasticity by neuromodulators across developmental stages, structuring shared and unique individual responses to early-life experiences. I will further describe our development of unsupervised analyses of individual biases across development based on locomotion trajectory and individual postures which uncovered a large spectrum of individuality types within the isogenic populations. Lastly, I will present preliminary results suggesting that specific neuronal pathways are required to robustly synchronize long-term behavior with development time.
    Lecture
  • Date:29TuesdayNovember 2022

    Chemical and Biological Physics Guest seminar

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    Time
    14:00 - 14:00
    Title
    Playing the evolution game with DNA oligomers
    Location
    Stone Administration Building
    LecturerProf Tommaso Bellini
    Universita degli Studi di Milano
    Organizer
    Department of Chemical and Biological Physics
    Contact
    AbstractShow full text abstract about We introduce a variant of SELEX in-vitro selection to study ...»
    We introduce a variant of SELEX in-vitro selection to study the evolution of a population of oligonucleotides starting from a seed of random-sequence DNA 50mers (our evolving individuals) and introducing selectivity by an affinity capture gel formed by beads carrying DNA 20mers of fixed sequence that act as targets (our resources). We PCR amplify the captured strands and proceed to the next generation. Because of the simplicity of the process, we could investigate what plays the role of “fitness" in this synthetic evolution process. We find that, across generations, evolution is first driven by the need of binding to the capture gel, while, on a later stages it appear dominated by the emerging of motifs related to inter-individual interactions.
    Lecture
  • Date:30WednesdayNovember 2022

    Chemical Biology Avenues to Illuminate Chromatin Modifications and Protein-protein Interactions

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    Time
    14:00 - 15:00
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerDr. Nir Hananya
    Department of Chemistry Princeton University
    Organizer
    Department of Chemical and Structural Biology
    Contact
    Lecture
  • Date:30WednesdayNovember 2022

    Deciphering non-neuronal cells contribution to Alzheimer’s disease pathology using high throughput transcriptomic and proteomic methods

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    Time
    14:00 - 15:00
    LecturerSedi Medina (PhD Thesis Defense Seminar) on Zoom, Dept of Brain Sciences, Dr. Michal Schwartz
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Alzheimer's disease (AD) is a devastating pathology of ...»
    Alzheimer's disease (AD) is a devastating pathology of the central nervous system (CNS) of unknown etiology which represents the most common neurodegenerative disorder. For decades, AD was perceived as a disease of the neuron alone. However, research advances in recent years have challenged this concept and shed light on the critical roles of non-neuronal cells on the development and progression of AD. In my PhD, I focused on understanding how two non-neuronal cell types - the Astrocytes and Microglia - respond to AD and how they possibly affect pathological processes. Our research identified a unique population of Astrocytes that significantly increased in association with brain pathology, which we termed disease-associated astrocytes (DAAs). This novel population of DAAs appeared at an early disease stage, increased in abundance with disease progression, and was not observed in young or in healthy adult animals. In addition, similar astrocytes appeared in aged wild-type (WT) mice and in aging human brains, suggesting their linkage to genetic and age-related factors. Aging is considered the greatest risk factor for AD, although the mechanism underlying the aging-related susceptibility to AD is unknown. One emerging factor that is involved in biological aging is the accumulation of senescent cells. Cellular senescence is a process in which aging cells change their characteristic phenotype. Under physiological conditions senescent cells can be removed by the immune system, however with aging, senescent cells accumulate in tissues, either due to a failure of effective removal or due to the accelerated formation of senescent cells.
    Our data highlight the contribution of non neuronal cells to AD pathogenesis by demonstrating  that 1. Overexpression of a specific gene by astrocytes affected the microglia cells' state, leading to a more homeostatic and less reactive microglial phenotype in comparison to the control group. 2. Accumulation of senescent microglia cells was observed in the brain of aged WT mice and AD mouse model (5xFAD), and by applying different therapeutic strategies we managed to observe significant quantitative differences in these cells, followed by a cognitive amelioration.
    Lecture
  • Date:30WednesdayNovember 2022

    Mapping chemical indicators in push-pull fields

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    Time
    14:00 - 15:00
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerProf. Meredith Schuman
    Departments of Geography and Chemistry University of Zurich
    Organizer
    Department of Plant and Environmental Sciences
    Contact
    Lecture
  • Date:01ThursdayDecember 2022

    Latest developments in mass spectrometry based proteomics

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    Time
    09:00 - 10:00
    Location
    Max and Lillian Candiotty Building
    LecturerDr. Yishai Levin
    Protein Profiling Unit, G-INCPM
    Organizer
    Department of Life Sciences Core Facilities
    Contact
    Lecture
  • Date:01ThursdayDecember 2022

    Physics Hybrid Colloquium

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    Time
    11:15 - 12:30
    Title
    Universal Principles of Tissue Organization
    Location
    Edna and K.B. Weissman Building of Physical Sciences
    LecturerDr. Miri Adler
    Yale university, New Haven, Connecticut, U.S.A
    Organizer
    Faculty of Physics
    Contact
    AbstractShow full text abstract about Our organs and tissues are made of different cell types that...»
    Our organs and tissues are made of different cell types that communicate with each other in order to achieve joint functions. However, little is known about the universal principles of these interactions. For example, how do cell interactions maintain stable cell composition, spatial organization and collective division of labor in tissues?
    And what is the role of these interactions in tissue-level diseases where the healthy balance in the tissue is disrupted such as excess scarring following injury known as fibrosis? In this talk, I will discuss my work in developing new theoretical frameworks that explore the collective behavior of cells that emerges from cell-cell interactions.
    I will present work on the cell communication circuit that controls tissue repair following injury and how it may lead to fibrosis. I will discuss a new mathematical approach to explore how cell interactions can be used to provide symmetry breaking and optimal division of labor in tissues, and how this approach can help to interpret complex patterns in real high-dimensional data.
    I will introduce a new concept in complex networks – network hyper-motifs, where we explore how small recurring patterns (network motifs) are integrated within large networks, and how these larger patterns (hyper-motifs) can give rise to emergent dynamic properties. Finally, I will conclude with future directions that are aimed at revealing principles that unify our understanding of different tissues.
    Colloquia
  • Date:01ThursdayDecember 2022

    The application of quantitative wood anatomy for investigating the relationship between forest primary productivity and woody biomass growth

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    Time
    13:30 - 13:30
    Location
    https://weizmann.zoom.us/j/4845901524?pwd=dkYybWIvTXVSaW40YmF2TEVxVFg0UT09
    LecturerDr. Daniele Castagneri
    Università degli Studi di Padova Dipartimento Territorio e Sistemi Agro-Forestali (TESAF), Italy
    Contact
    Lecture
  • Date:01ThursdayDecember 2022

    Large scale spatio-temporal organization of brain tumors: from oncostreams to liquid crystals

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    Time
    14:00 - 15:00
    Location
    Max and Lillian Candiotty Building
    LecturerProf. Pedro Lowenstein
    Richard Schneider Collegiate Professor of Neurosurgery Departments of Neurosurgery, Cell and Developmental Biology, and Biomedical Engineering University of Michigan, Ann Arbor, Michigan, USA
    Organizer
    Dwek Institute for Cancer Therapy Research
    Contact
    Lecture
  • Date:01ThursdayDecember 2022

    “Investigating the Surface Dynamics of Ions at the Anode-Electrolyte Interface using NMR Spectroscopy”

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    Time
    14:00 - 15:00
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerShakked Schwartz
    M.Sc. student of Dr. Michal Leskes
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about High-Performance, Rechargeable Li-ion Batteries (LIBs) are k...»
    High-Performance, Rechargeable Li-ion Batteries (LIBs) are key to the global transition from fossil fuels to renewable energy sources. LIBs utilizing lithium metal as the anode are particularly exciting due to their exceptional energy density and redox potential, yet their advancement is hindered by growth of metallic filaments and unstable surface layers. Efficient cationic transport, which is crucial for battery performance, largely depends on the heterogeneous and disordered interphase formed between the anode and the electrolyte during cycling. Directly observing this interphase as well as the dynamic processes involving it is a great challenge. Here we present an approach to elucidate these dynamic processes and correlate them with the corresponding interfacial chemistry, focusing on the first step of cationic transport: surface adsorption. Employing Dark State Exchange Saturation Transfer (DEST) by 7Li NMR, we were able to detect the exchange of Li-ions between the homogenous electrolyte and the heterogeneous surface layer, highlighting the hidden interface between the liquid and solid environments. This enabled determination of the kinetic and energetic binding properties of different surface chemistries, advancing our understanding of cationic transport mechanisms in Li-ion batteries. 
    Lecture
  • Date:04SundayDecember 202205MondayDecember 2022

    2nd Israeli Flow Cytometry conference

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    Time
    08:00 - 08:00
    Location
    The David Lopatie Conference Centre
    Chairperson
    Ziv Porat
    Homepage
    Conference
  • Date:04SundayDecember 2022

    Origin of compact exoplanetary systems

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    Time
    15:00 - 15:00
    Location
    Sussman Family Building for Environmental Sciences
    LecturerRaluca Rufu SwRI, Boulder
    Organizer
    Department of Earth and Planetary Sciences
    Contact
    AbstractShow full text abstract about One of the most surprising discoveries in exoplanet science ...»
    One of the most surprising discoveries in exoplanet science has been the existence of compact systems of Earth to super-Earth sized planets. These multi-planet systems have nearly circular, coplanar orbits located at distances of only ∼ 0.01 − 0.1 AU, a region devoid of planets in our Solar System. Although compact systems comprise a large fraction of known exoplanetary systems, their origin remains debated.
    Common to all prior models of compact system origin is the assumption that infall to the stellar disk ends before planets form. However, there is growing observational, theoretical, and meteoritical evidence of the early growth of mm-sized “pebbles” during the infall phase. We propose that accretion of compact systems occurs during stellar infall. As a cloud core collapses, solids are gradually accumulated in the disk, producing favorable conditions for the formation and survival of close-in planets. A key feature of this model is that the reduced gas-to-solids ratio in the planet accretion region can allow for the formation and survival of compact systems, even with Type-I migration.
    Accretion within infall-supplied disks has been studied in the context of gas planet satellite origin. Formation models predict that the total mass of the satellite system during this evolution maintains a nearly constant mass ratio ∼10^−4 compared to the host planet’s mass. The maximum mass ratio of compact exoplanetary systems compared to the stellar mass are similar to those of the giant satellite system, suggesting that accretion of compact systems may be similar to regular satellite formation.
    Lecture
  • Date:05MondayDecember 2022

    Atomic Resolution Structures of Amyloid Fibrils - Ab1-42 , Ab1-40 and b2-microglobulin

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    Time
    11:00 - 12:15
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. Robert Guy Griffin
    Department of Chemistry Francis Bitter Magnet Laboratory, MIT
    Organizer
    Faculty of Chemistry
    Homepage
    Contact
    AbstractShow full text abstract about Many peptides and proteins form amyloid fibrils whose detail...»
    Many peptides and proteins form amyloid fibrils whose detailed molecular structure is of
    considerable functional and pathological importance. For example, amyloid is closely associated
    with the neurodegenerative diseases such as Alzheimer’s and Parkinson’s diseases. We review the
    macroscopic properties of fibrils and outline approaches to determining their microscopic structure
    using magic angle spinning (MAS) NMR with 2D and 3D dipole recoupling experiments involving
    spectral assignments and distance measurements. Key to obtaining high resolution is measurement
    of a sufficient number of NMR structural restraints (13C-13C and 13C-15N distances per residue). In
    addition, we demonstrate the applicability of 1H detection and dynamic nuclear polarization (DNP)
    to amyloid structural studies.
    We discuss the structures of three different amyloids: (1) fibrils formed by Ab1-42, the toxic
    species in Alzheimer’s, using >500 distance constraints; (2) fibrils of Ab1-40, a second form of Ab
    with a different structure, and (3) a structure of fibrils forned by b2-microglobulin, the 99 amino
    acid protein associated with dialysis related amylosis, using ~1200 constraints. Contrary to
    conventional wisdom, the spectral data indicate that the molecules in the fibril are microscopically
    well ordered. In addition, the structures provide insight into the mechanism of interaction of the
    monoclonal antibody, Aducanumab, directed against Ab amyloid.
    Colloquia
  • Date:05MondayDecember 2022

    Special Guest Seminar

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    Time
    11:00 - 12:00
    Title
    "Coding and Noncoding Regulation of Intestinal Inflammation"
    Location
    Max and Lillian Candiotty Building
    LecturerDr. Liraz Galia
    Organizer
    Department of Immunology and Regenerative Biology
    Contact
    Lecture
  • Date:06TuesdayDecember 2022

    Selective translation control by 40S ribosomal proteins mRNA binding

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    Time
    10:00 - 11:00
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerTal Havkin Solomon
    Dept. of Biomolecular Sciences-WIS
    Organizer
    Department of Biomolecular Sciences
    Contact
    Lecture
  • Date:06TuesdayDecember 2022

    Deep sea gas seeps are hotspots of microbial productivity and biotic interactions

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    Time
    11:30 - 12:30
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerDr. Maxim Rubin-Blum
    Israel Oceanographic and Limnological Research
    Organizer
    Department of Plant and Environmental Sciences
    Contact
    Lecture
  • Date:07WednesdayDecember 2022

    Lysosomal regulation of neuronal circuit remodeling

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    Time
    10:00 - 11:00
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    LecturerProf. Oren Schuldiner
    Dept of Molecular Cell Biology WIS
    Contact
    Lecture

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