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January 12, 2015
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Date:15WednesdayMay 2024Lecture
Elizabeth Reznik GM Shouval Lab
More information Time 10:00 - 11:00Location Nella and Leon Benoziyo Building for Biological SciencesOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Myoblast cell fusion is essential for skeletal muscle develo...» Myoblast cell fusion is essential for skeletal muscle development and regeneration. Yet, the molecular machinery that drives myoblast fusion remains incompletely understood. Myoblast cell fusion is an intricate multistep process, making it challenging to identify the specific proteins involved. Until now, no approach was available to capture fusing cells and dissect the dynamic changes in their cellular transitions. To fill this gap, we have developed a method using small-molecule inhibitors to synchronize muscle differentiation ex vivo and capture cells before, during, and after fusion. This allows us to identify and associate proteins with specific stages of muscle cell differentiation and fusion. Using this method, we have identified the Paralemmin A-kinase anchor protein (PALM2-AKAP2), a protein of unknown function, as a potential regulator of muscle regeneration. Hence, this work provides valuable data and will provide new insight into the mechanism of myoblast fusion and muscle regeneration. -
Date:15WednesdayMay 2024Lecture
Mitochondrial dynamics in health and disease
More information Time 11:00 - 12:00Location Max and Lillian Candiotty BuildingOrganizer Department of Immunology and Regenerative BiologyContact -
Date:15WednesdayMay 2024Lecture
Machine Learning and Statistics Seminar
More information Time 11:15 - 12:15Title Towards Reverse Algorithmic Engineering of Neural NetworksLocation Jacob Ziskind BuildingLecturer Dan Vilenchik
BGUOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about As machine learning models get more complex, they can outper...» As machine learning models get more complex, they can outperform traditional algorithms and tackle a broader range of problems, including challenging combinatorial optimization tasks. However, this increased complexity can make understanding how the model makes its decisions difficult. Explainable models can increase trust in the model’s decisions and may even lead to improvements in the algorithm itself. Algorithms like GradCAM or SHAP provide good explanations in terms of feature importance, typically for classification tasks. Still, they provide little insight when the ML pipeline is designed to work, for example, as an algorithm for solving optimization problems. In this talk, we present a concept-learning framework for explaining a neural machine-learning model’s decision-making process from an algorithmic point of view. Using the NeuroSAT algorithm for SAT solving as a case study, we demonstrate how our framework finds the algorithmic concepts that drive the operation of NeuroSAT. Using the concepts that we discover, we can re-write the black box NeuroSAT net as a text-book algorithm that performs typical algorithmic moves like (a) compute confidence levels for every variable, (b) fix variables with the highest confidence and simplify the instance, (c) solve the residual formula using some simple technique. (Such a principle guides, for example, the well-known Belief-Propagation-Decimation algorithm).
Joint work with Elad Shoham (PhD student BGU), Kahalil Wattad (MSc student BGU), Hadar Cohen (MSc student BGU), and Havana Rika (Tel-Aviv-Yafo Academic College).
Short bio:
Dan Vilenchik holds a PhD in computer science from Tel Aviv University. He did a postdoc at UC Berkeley and UCLA. He is currently a tenured member of the Electrical Engineering School at Ben-Gurion University. His research includes various aspects of machine learning, such as the challenges of high-dimensional data, explainable AI, NLP, and multidisciplinary projects.
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Date:16ThursdayMay 2024Colloquia
Physics Colloquium
More information Time 11:15 - 12:30Title Toward Autonomous “Artificial Cells” in 2DLocation Edna and K.B. Weissman Building of Physical SciencesLecturer Weizmann Institute of Science, Prof. Roy Bar-Ziv Organizer Department of Physics of Complex SystemsContact Abstract Show full text abstract about We study the assembly of programmable quasi-2D DNA compartme...» We study the assembly of programmable quasi-2D DNA compartments as
“artificial cells” from the individual cellular level to multicellular communication.
We will describe work on autonomous synthesis and assembly of cellular
machines, collective modes of synchrony in a 2D lattice of ~1000
compartments, and a first look at the birth of proteins on a single DNA.
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Date:16ThursdayMay 2024Lecture
Vision and AI
More information Time 12:15 - 13:15Title Large-scale study of human memory for meaningful narrativesLocation Jacob Ziskind BuildingLecturer Misha Tsodyks
WISOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about The statistical study of human memory requires large-scale e...» The statistical study of human memory requires large-scale experiments, involving many stimuli conditions and test subjects. While this approach has proven to be quite fruitful for meaningless material such as random lists of words, naturalistic stimuli, like narratives, have until now resisted such a large-scale study, due to the quantity of manual labor required to design and analyze such experiments.
Large language models (LLMs) have provided the necessary technological breakthrough for this purpose, given their ability to generate human-like text and carry out novel tasks after being prompted by instructions in natural language, without additional training. In this work, we develop a pipeline that uses large language models (LLMs) both to design naturalistic narrative stimuli for large-scale recall and recognition memory experiments, as well as to analyze the results. We performed online memory experiments with a large number of participants and collected recognition and recall data for narratives of different sizes. We found that both recall and recognition performance scale linearly with narrative length -
Date:16ThursdayMay 2024Lecture
Geometric Functional Analysis and Probability Seminar
More information Time 13:30 - 14:30Title Asymptotic analysis in some problems with fractional Brownian motionLocation Jacob Ziskind BuildingLecturer Pavel Chigansky
HUJIOrganizer Department of MathematicsContact Abstract Show full text abstract about Some problems in the theory and applications of stochastic p...» Some problems in the theory and applications of stochastic processes reduce to solving integral equations with their covariance operators. Usually, such equations do not have explicit solutions, but useful information can still be extracted through asymptotic analysis with respect to relevant parameters. In this talk, I will survey some recent results on such equations for processes related to the fractional Brownian motion: applications include the problem of small deviations, linear filtering, and statistical inference.
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Date:19SundayMay 202420MondayMay 2024International Board
Executive Board and committee meetings 2024
More information Time All dayLocation The David Lopatie Conference CentreContact -
Date:19SundayMay 2024Lecture
Floods in a warming climate: what are the missing puzzle pieces?
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Efrat Morin
The Hebrew University of JerusalemOrganizer Department of Earth and Planetary SciencesContact Abstract Show full text abstract about Flood is the outcome of complex processes interacting at a r...» Flood is the outcome of complex processes interacting at a range of scales. Flood generation and its magnitude depend on different precipitation and surface properties. As the climate becomes warmer globally, precipitation patterns are changing and, consequently, altering flood regimes. Resolving the expected changes in flood properties requires examining projections of precipitation features most correlated with floods. While the redistribution of mean annual precipitation amounts is generally known, the trends in many other essential factors controlling floods are yet to be resolved. For example, flash flood magnitude is sensitive to space-time rainstorm properties such as areal coverage or storm speed. Still, knowledge of how these properties are affected by global warming is lacking. Maximal rain rates for duration relevant to the watershed’s response time are also crucial parameters controlling the flood discharge. There is some understanding of how extreme rain rates change, but the magnitude and sign depend on the rain duration considered. Changes in frequency and the intra-seasonal distribution of precipitation events also affect flood regimes. Finally, watersheds of different properties are sensitive to different precipitation features, and thus, different watersheds may respond differently to global warming. In this talk, we will present the complexity of flood response under global warming and then focus on two questions: 1) how does global warming affect heavy precipitation events (HPEs) in the eastern Mediterranean, and 2) how these effects are imprinted in the resulting floods in small-medium Mediterranean watersheds.
We simulated 41 eastern Mediterranean HPEs with the high-resolution weather research and forecasting (WRF) model. Each event was simulated twice: under historical conditions and at the end of the 21st-century conditions (RCP8.5 scenario) using the “pseudo global warming” approach. Comparison of precipitation patterns from the paired simulations revealed that heavy precipitation events in our region are expected to become drier and more spatiotemporally concentrated, i.e., we expect higher rain rates on smaller coverage areas and shorter storm durations that, in total, yield lower amounts of rainfall.
These effects have some contradicting signs, and their full hydrological impact on streamflow peak discharge and volume was further explored. Ensembles of spatially-shifted rainfall data from the simulated HPEs were input to a high-resolution distributed hydrological model (GB-HYDRA) representing four small-medium-size watersheds (18–69 km2) in the eastern Mediterranean (Ramot Menashe). Flow volume is significantly reduced in future HPEs, while the change in flood peak is more complicated due to the combined effect of precipitation amount (decreasing) and precipitation rate (increasing). For the watersheds examined in this research, which are mostly agricultural, flood peaks at the watershed outlets are mostly reduced. The dynamics of flood generation at sub-watersheds of different sizes and properties are further examined in this research to understand scenarios for lowering or increasing flood peaks. This study emphasizes that detecting and quantifying global warming impact on space-time precipitation patterns is essential for flood regime projection. -
Date:20MondayMay 2024Lecture
Special Guest Seminar
More information Time 11:00 - 12:00Title Tissue Stem Cells: Making Choices and Living with Them in Good Times and BadLocation Dolfi and Lola Ebner AuditoriumLecturer Prof. Elaine Fuchs Organizer Department of Immunology and Regenerative BiologyContact -
Date:20MondayMay 2024Colloquia
Designing nanoparticles for biological environments: from quantum sensing to gene medicine
More information Time 11:00 - 12:15Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Petr Cigler
Institute of Organic Chemistry and Biochemistry, Czech Academy of SciencesOrganizer Department of Chemical and Biological PhysicsHomepage Contact Abstract Show full text abstract about The use of nanoparticles in diagnostics, therapeutics and im...» The use of nanoparticles in diagnostics, therapeutics and imaging has revolutionized these fields with new properties not available with small molecules. Nanoparticle interface provide possibilities for polyvalent and independent attachment of different molecules serving as recognition/targeting structures, optical probes, spin probes or catalysts. However, nanoparticles operating in biological environments require precise control of multiple factors related to surface chemistry and their composition. To avoid for example aggregation, off-target interactions, and protein corona formation, appropriate interface design is essential. This talk will present general nanoparticle design strategies and specific examples including nanodiamonds and lipid nanoparticles. -
Date:20MondayMay 2024Lecture
Foundations of Computer Science Seminar
More information Time 11:15 - 12:15Title Online Edge ColoringLocation Jacob Ziskind BuildingLecturer David Wajc
TechnionOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about Vizing’s Theorem provides an algorithm that edge colors any ...» Vizing’s Theorem provides an algorithm that edge colors any graph of maximum degree Δ using Δ 1 colors, which is necessary for some graphs, and at most one higher than necessary for any graph. In online settings, the trivial greedy algorithm requires 2Δ-1 colors, and Bar-Noy, Motwani and Naor in the early 90s showed that this is best possible, at least in the low-degree regime. In contrast, they conjectured that for graphs of superlogarithmic-in-n maximum degree, much better can be done, and that even (1 o(1))Δ colors suffice online. This would make edge coloring a rare problem, for which "online is (nearly) as easy as offline". In this talk I will outline the history of this conjecture, and its recent resolution, together with extensions of a flavor resembling classic and recent results on *list* edge-coloring and “local” edge-coloring.
Talk based in part on joint works with many wonderful and colorful collaborators, including Sayan Bhattacharya, Joakim Blikstad, Ilan R. Cohen, Fabrizio Grandoni, Seffi Naor, Binghui Peng, Amin Saberi, Aravind Srinivasan, Ola Svensson and Radu Vintan.
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Date:21TuesdayMay 2024Lecture
Molecular-level insights into light-induced reactions in biological systems from multiscale simulations
More information Time 14:00 - 15:00Location Gerhard M.J. Schmidt Lecture HallLecturer Dr. Igor Shapiro
Hebrew UniversityOrganizer Department of Chemical and Structural BiologyContact -
Date:22WednesdayMay 2024Lecture
LS Luncheon
More information Time 12:00 - 14:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Prof. Neta Regev Rudzki Contact -
Date:22WednesdayMay 2024Lecture
Spotlight on Science
More information Time 13:00 - 14:00Title Structure-function relationship as a key to deciphering neural codeLocation Gerhard M.J. Schmidt Lecture HallLecturer Dr. Alon Rubin
Dr.Organizer Science for All UnitContact -
Date:23ThursdayMay 2024Lecture
Geometric Functional Analysis and Probability Seminar
More information Time 11:00 - 12:00Title Metric functional boundaries of groupsLocation Jacob Ziskind BuildingLecturer Ariel Yadin
BGUOrganizer Department of MathematicsContact Abstract Show full text abstract about Based on works of Busemann and Gromov, Anders Karlsson has p...» Based on works of Busemann and Gromov, Anders Karlsson has proposed a theory of “metric functionals” on a general metric space, as a replacement for linear functionals when there is no linear structure. for discrete spaces, these identify with “horofunctions”. We will discuss some aspects of these objects for “well suited” metrics on discrete groups. We are mainly interested in the interaction between the geometry and the algebraic properties of the group. for example, it seems that metric functionals can be useful in studying the structure of “small” groups, and understanding the existence of (virtual) characters. I am not assuming familiarity with any of the above notions, and plan to properly define everything presented in the talk. This is based on joint works with Liran Ron-George.
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Date:23ThursdayMay 2024Colloquia
Physics Colloquium
More information Time 11:15 - 12:30Title Quantum Dot Physics Using Atomic Defects in Ultrathin Tunnel BarriersLocation Edna and K.B. Weissman Building of Physical SciencesLecturer Prof. Hadar Steinberg
Hebrew UniversityOrganizer Department of Condensed Matter PhysicsContact Abstract Show full text abstract about Quantum dots (QDs) are conducting regions which can localize...» Quantum dots (QDs) are conducting regions which can localize few charge carriers, and where the energy spectrum is dominated by Coulomb repulsion. QDs can be as large as few hundreds of nanometers, or as small as a single molecule, their sizes depending on their physical realization – whether in two-dimensional materials, nanowires, molecular systems.
In my talk I will describe our work on a new type of an atomically-sized QD, realized in defects residing in ultrathin two-dimensional insulators. These defect-dots are found in layered materials such as hexagonal Boron Nitride (hBN), which we study by their assembly into stacked devices. By using graphene electrodes, we are able to electronically couple to the QD, while allowing the QD energy to be externally tuned exploiting the penetration of electric field through graphene.
A consequence of the structure of our devices is that the defect QDs are placed at atomic distance to the conductors on both sides. I will show how the presence of such energy-tunable, atomically sized QDs at nanometer proximity to other conducting systems opens new opportunities for sensitive measurements, including use of QDs as highly sensitive spectrometers [1], or as single electron transistors, unique in their sensitivity to local electric fields at the nanometer scale [2]. I will discuss our future prospects of using defect QDs as quantum sensors.
References
1. Devidas, T.R., I. Keren, and H. Steinberg, Spectroscopy of NbSe2 Using Energy-Tunable Defect-Embedded Quantum Dots. Nano Letters, 2021. 21(16): p. 6931-6937.
2. Keren, I., et al., Quantum-dot assisted spectroscopy of degeneracy-lifted Landau levels in graphene. Nature Communications, 2020. 11(1): p. 3408.
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Date:23ThursdayMay 2024Lecture
Vision and AI
More information Time 12:15 - 13:15Title 3D Motion Synthesis and ControlLocation Jacob Ziskind BuildingLecturer Sigal Raab
TAUOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about Human motion is a fundamental attribute, underlying human ac...» Human motion is a fundamental attribute, underlying human actions, gestures, and behavior. Research of human motion has a wide range of applications, from medical simulations, through security, to entertainment. While the domain of deep learning for RGB image analysis has received huge attention, the domain of motion manipulation using DNNs, and more recently diffusion models, is in its infancy, and holds many scientific opportunities yet to be discovered.
Moreover, motion is challenging due to its irregular structure, diverse angles, and the expense and complexity of obtaining high-quality data. My research focuses on generative tasks such as motion synthesis and motion editing using deep neural networks. In the upcoming talk, I will discuss the building blocks used for motion synthesis and elaborate on various works that utilize diffusion models for synthesis and editing tasks. Each work addresses different aspects of the motion domain and involves various controls and tasks.
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Date:23ThursdayMay 2024Lecture
A guest lecture by Prof. Sarab Abu-Rabia Queder
More information Time 13:00 - 14:15Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Sarab Abu-Rabia Queder Contact -
Date:23ThursdayMay 2024Academic Events
Scientific Council Meeting
More information Time 14:00 - 14:00Location The David Lopatie Conference CentreContact -
Date:26SundayMay 2024Lecture
The Clore Center for Biological Physics
More information Time 13:15 - 14:30Title Phages vs bacteria warfare: co-evolution and intelligence gatheringLocation Koffler Accelerator of the Canada Center of Nuclear PhysicsLecturer Prof. Yigal Meir
Ben-Gurion UniversityOrganizer Clore Center for Biological PhysicsContact Abstract Show full text abstract about The warfare between bacteria and phages - viruses that infec...» The warfare between bacteria and phages - viruses that infect bacteria - has been raging for billions of years. During this time both sides have evolved various attack and defense systems. In this talk I will describe 3 related projects: 1. Is there an optimal number of such defense or anti-defense systems? 2. How can different phages which prey on the same bacteria co-exist, in contradiction with the expected competitive exclusion? 3. Some phages have developed the ability to garner environmental information, enabling them to make more "intelligent" decisions. How much is such intelligence worth, in terms of other resources?
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