Pages
March 25, 2015
-
Date:04ThursdayMay 2023Lecture
Toward complete computational optimization of antibody
More information Time 09:00 - 10:00Location Max and Lillian Candiotty BuildingLecturer hosted by Dr. Ira Zaretsky, Ariel Tennenhouse
Fleishman Lab, Department of Biomolecular Sciences hosted by Antibody Unit, LSCFOrganizer Department of Life Sciences Core FacilitiesContact -
Date:04ThursdayMay 2023Colloquia
Physics Colloquium
More information Time 11:00 - 12:30Title TBA...Location Edna and K.B. Weissman Building of Physical SciencesLecturer Prof. Alberto Morpurgo
Universite de GenevaOrganizer Faculty of PhysicsContact Abstract Show full text abstract about TBA.. ...» TBA.. -
Date:04ThursdayMay 2023Lecture
Vision and AI
More information Time 12:15 - 13:15Title Matching 3D Point CloudsLocation Jacob Ziskind BuildingLecturer Shai Avidan
TAUOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about I will present three deep learning algorithms for registerin...» I will present three deep learning algorithms for registering 3D point clouds in different settings.
The first is designed to find a rigid transformation between point clouds and is based on
the concept of best buddies similarity. The second algorithm offers a fast method for non-rigid
dense correspondence between point clouds based on structured shape construction.
Finally, I extend the second algorithm to handle scene flow estimation that can be learned on a small amount
of data without employing ground-truth flow supervision.
-
Date:04ThursdayMay 2023Lecture
The mitochondrial gatekeeper VDAC1 as an emerging drug target for novel anti-cancer therapeutics
More information Time 14:00 - 15:00Location Max and Lillian Candiotty BuildingLecturer Prof. Varda Shoshan-Barmatz
Department of Life Sciences and the National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-ShevaOrganizer Dwek Institute for Cancer Therapy ResearchContact -
Date:07SundayMay 202308MondayMay 2023International Board
Executive Board and committees meetings 2023
More information Time All dayLocation The David Lopatie Conference CentreContact -
Date:07SundayMay 2023Lecture
Determining the age of the Kalahari Group, Southern Africa, using complex solutions for cosmogenic isotope concentrations
More information Time 11:00 - 12:00Location Sussman Family Building for Environmental SciencesLecturer Ari Matmon
The Hebrew university of JerusalemOrganizer Department of Earth and Planetary SciencesContact -
Date:07SundayMay 2023Lecture
Master Defense Seminar
More information Time 11:30 - 12:30Title Developing a New Computational Approach for Chemical Classification of Plant metabolites using Machine LearningLocation Nella and Leon Benoziyo Building for Biological SciencesLecturer Victoria Poltorak
Prof. Asaph Aharoni & Dr. David Zeevi Dept. of Plant and Environmental Sciences Weizmann Institute of ScienceOrganizer Department of Plant and Environmental SciencesContact -
Date:07SundayMay 2023Lecture
Campus as a Living Laboratory for Sustainability: Energy, Food, and Trash
More information Time 13:00 - 14:00Title SAERI - Sustainability and Energy Research Initiative Seminar SeriesLocation Nella and Leon Benoziyo Building for Biological SciencesLecturer Prof. Catherine Middlecamp
Nelson Institute for Environmental Studies University of Wisconsin- Madison, USAOrganizer Weizmann School of ScienceContact -
Date:08MondayMay 2023Colloquia
Animal and Microbial Rhodopsins
More information Time 11:00 - 12:15Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Hideki Kandori
Department of Frontier Materials, Nagoya Institute of Technology, JapanOrganizer Faculty of ChemistryHomepage Contact Abstract Show full text abstract about Rhodopsins are photoreceptive membrane proteins containing a...» Rhodopsins are photoreceptive membrane proteins containing a retinal chromophore in animals and microbes. Animal and microbial rhodopsins possess 11-cis and all-trans retinal, respectively, and undergo isomerization into all-trans and 13-cis retinal by light. While animal rhodopsins are G protein coupled receptors, the function of microbial rhodopsins is highly divergent, including light-driven ion pumps, light-gated ion channels, photosensors, and light-activated enzymes. Microbial rhodopsins have been the main tools in optogenetics.
Function of rhodopsins starts in 10-15 sec, and activation of rhodopsins occurs in the protein environment that has been optimized during evolution (1015 sec). We thus need various methods to understand these events of 30 orders of magnitude in time. We have studied molecular mechanism of rhodopsins by use of spectroscopic methods. Using ultrafast spectroscopy, we showed the primary event in our vision being retinal photoisomerization. In rhodopsins, photoisomerization of retinal, the shape-changing reaction, occurs even at 77 K. Using low-temperature infrared spectroscopy, we detected protein-bound water molecules of rhodopsins before X-ray crystallography. Detailed vibrational analysis provided structural information such as our color discrimination mechanism.
I will talk about our spectroscopic study of animal and microbial rhodopsins. Recent unexpected findings such as unusual isomerization pathways and temperature effects are also presented. -
Date:08MondayMay 2023Lecture
Foundations of Computer Science Seminar
More information Time 11:15 - 12:45Title A distribution testing oracle separation between QMA and QCMALocation Jacob Ziskind BuildingLecturer Chinmay Nirkhe
IBM WatsonOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about It is long-standing open question in quantum complexity theo...» It is long-standing open question in quantum complexity theory whether the definition of non-deterministic quantum computation requires quantum witnesses (QMA) or if classical witnesses suffice (QCMA). We make progress on this question by constructing a randomized classical oracle separating the respective computational complexity classes. Previous separations [Aaronson-Kuperberg (CCC'07), Fefferman-Kimmel (MFCS'18)] required a quantum unitary oracle. The separating problem is deciding whether a distribution supported on regular un-directed graphs either consists of multiple connected components (yes instance) or consists of one expanding connected component (no instances) where the graph is given in an adjacency-list format by the oracle. Therefore, the oracle is a distribution over n-bit boolean functions. -
Date:09TuesdayMay 202310WednesdayMay 2023Conference
Mechanobiology: Bridging biology and the physical sciences
More information Time 08:00 - 08:00Chairperson Samuel SafranHomepage -
Date:09TuesdayMay 2023Lecture
The unique life of the intrinsically disordered proteins (IDPs)
More information Time 10:00 - 11:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Prof. Yosef Shaul
Dept. of Molecular Genetics - WISOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Over 20% of our proteins are intrinsically disordered (IDP/I...» Over 20% of our proteins are intrinsically disordered (IDP/IDR). IDPs/IDRs regulate many aspects of the living cells. They are generally highly dynamic, modifiable, adaptable, and short-lived proteins. We have previously reported that IDPs/IDRs undergoing proteasomal degradation via 26S and 20S proteasomes, the latter in a ubiquitin-independent manner. In this seminar, I will show data on the mechanisms of their 20S-mediated degradation in vitro and in the cells. Using proteomic approaches, we have identified many IDPs/IDRs undergoing 20S proteasomal degradation, all bearing unique structural features shared by liquid-liquid phase separation (LLPS) proteins. Proteasomal live imaging further highlighted the intracellular proteasomal dynamics and LLPS formation.
-
Date:09TuesdayMay 2023Colloquia
Physics Colloquium
More information Time 11:00 - 12:30Title Intense Laser-Material Interactions: Stars, Exoplanets, and Unique States of Matter in the LaboratoryLocation Edna and K.B. Weissman Building of Physical SciencesLecturer Prof. Christopher Deeney
University of Rochester Laboratory for Laser EnergeticsOrganizer Faculty of PhysicsContact Abstract Show full text abstract about Since 1970, the University of Rochester and other laboratori...» Since 1970, the University of Rochester and other laboratories around the world have
built more energetic and more powerful lasers. These technology advances have enabled new
science regimes. Fifty years later, fusion ignition has been achieved in the laboratory ,
where more energy than the laser energy was released ; an amazing demonstration of precision
science under extreme conditions.Astrophysics is now a laboratory science-new equations of
state, constitutive properties and structures are measured at conditions equivalent to giant gas
planets and super earths. Ultrashort pulse lasers, a LLE invention acknowledged in the 2018
Nobel Prize for Physics, is enabling ultrahigh field physics and new generations of particle
accelerators and light sources. Recent progress on ignition, high-energy-density science and
short-pulse laser physics will be summarized. The pursuit of direct-drive fusion and the path
to 25 Petawatt lasers will be discussed. -
Date:09TuesdayMay 2023Lecture
Deciphering microbial gene functions: insights from large-scale (meta)genomics
More information Time 11:30 - 12:30Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Dr. David Burstein
School of Molecular Cell Biology and Biotechnology, Tel-Aviv UniversityOrganizer Department of Plant and Environmental SciencesContact -
Date:10WednesdayMay 2023Lecture
An Innate Immunity Pathway Against Invading Microbes Targets the Paternal Mitochondria for Destruction after Fertilization
More information Time 10:00 - 11:15Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. Eli Arama
Dept of Molecular Genetics, WISOrganizer Department of Brain SciencesContact -
Date:10WednesdayMay 2023Lecture
"Simulations for materials in energy"
More information Time 11:00 - 12:00Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Nuria Lopez
Institute of Chemical Research of Catalonia (ICIQ)Organizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Finding new materials for the conversion of CO2 into useful ...» Finding new materials for the conversion of CO2 into useful products is a complex
task. Simulations can provide mechanistic and stability insights trying to accelerate
the process. In my talk I will present the different degrees of complexity that we
try to address in the simulations and which are the major challenges in the field.
-
Date:10WednesdayMay 2023Lecture
Human hematopoietic stem cells as sensors of inflammatory memory
More information Time 11:00 - 12:00Location Max and Lillian Candiotty BuildingLecturer Prof. Stephanie Z. Xie
Princess Margaret Cancer Centre, University Health Network, Toronto, ON, CanadaOrganizer Department of Immunology and Regenerative BiologyContact -
Date:10WednesdayMay 2023Colloquia
Physics Colloquium
More information Time 11:15 - 12:00Title GW astrophysics with LIGO/VIRGO dataLocation Edna and K.B. Weissman Building of Physical SciencesLecturer Matias Zaldarriaga
Institute for Advanced Study Princeton, NJOrganizer Faculty of PhysicsContact Abstract Show full text abstract about I will describe some of our recent work re-analyzing the gra...» I will describe some of our recent work re-analyzing the gravitational wave data made public by the LIGO collaboration. More broadly I will discuss some of the outstanding questions related to binary black hole mergers and what the data might be saying about how the GW sources formed. I will comment on some fruitful directions for further improvements. -
Date:10WednesdayMay 2023Lecture
Machine Learning and Statistics Seminar
More information Time 11:15 - 12:30Title Causal inference with misspecified interference structureLocation Jacob Ziskind BuildingLecturer Daniel Nevo
Tel-Aviv UniversityOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about The typical approach towards drawing causal conclusions from...» The typical approach towards drawing causal conclusions from observed data starts by defining a causal estimand, for example in terms of potential outcomes or the so-called do operator, and continues by providing conditions for identification of this estimand from the data, followed by statistical estimation and inference. One of the main assumptions is the no-interference assumption, meaning that the treatment assigned to one unit does not affect other units in the sample. However, in many domains such as in the social sciences and infectious disease epidemiology, this assumption is implausible in practice due to social interactions.
As an alternative to the no-interference assumption, an interference structure is often represented using a network. Ubiquitously, the network structure is assumed to be known and correctly specified. Nevertheless, correctly encoding the interference structure in a network can be challenging. For example, people may misreport their social connections, or report connections irrelevant to the specific combination of treatment and outcome.
Building on the exposure mapping framework, we derive the bias arising from estimating causal effects under a misspecified interference structure. To address this problem, we propose a novel estimator that uses multiple networks simultaneously and is unbiased if one of the networks correctly represents the interference structure, thus providing robustness to the network specification. Additionally, we propose a sensitivity analysis that quantifies the impact of a postulated misspecification mechanism on the causal estimates. Through simulation studies, we illustrate the bias from assuming an incorrect network and show the bias-variance tradeoff of our proposed network-misspecification-robust estimator. We further demonstrate the utility of our methods in two real examples.
Joint work with Bar Weinstein
-
Date:10WednesdayMay 2023Lecture
Smell and our unconscious sense of self
More information Time 13:00 - 14:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. Benjamin D. Young
Institute for NeuroscienceUniversity of Nevada, RenoOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Benjamin D. Young Ph.D. is an associate professor in philoso...» Benjamin D. Young Ph.D. is an associate professor in philosophy and interdisciplinary neuroscience at the University of Nevada, Reno. Previously he held a Kreitman Post-Doctoral Fellowship in the Department of Brain and Cognitive Sciences at Ben-Gurion University, as well as Visiting Assistant Professorship and Post-Doctoral Fellowship in the Department of Cognitive Science at Hebrew University. He conducts empirically informed philosophical research with a particular emphasis on olfaction focusing on non-conceptual content, qualitative consciousness in the absence of awareness, and the perceptible objects of smell. His most recent projects include co-editing the textbook Mind, Cognition, and Neuroscience and the collection Theoretical Perspectives on Smell. Ben is finishing a book on smell tentatively titled Stinking Philosophy! and beginning to work on a book about the unconscious mind. Previously he showed how olfaction calls into question the general neuroscientific theories of consciousness and the relationship between access and phenomenal consciousness. Dr. Young’s current research extends this framework and examines the role that smell plays in allowing us to recognize our embodied material composition and what we can perceive about others from their smell both with and without subjective awareness.
For more information about Ben’s research see
https://www.unr.edu/philosophy/faculty-staff/benjamin-young
