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March 25, 2015
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Date:24MondayApril 2023Lecture
Foundations of Computer Science Seminar
More information Time 11:15 - 12:30Title A distribution testing oracle separation between QMA and QCMALocation Jacob Ziskind BuildingLecturer Chinmay Nirkhe
IBM WatsonOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about It is a long-standing open question in quantum complexity th...» It is a long-standing open question in quantum complexity theory whether the definition of non-deterministic quantum computation requires quantum witnesses ( -
Date:24MondayApril 2023Lecture
Foundations of Computer Science Seminar
More information Time 11:15 - 13:00Title A distribution testing oracle separation between QMA and QCMALocation Jacob Ziskind BuildingLecturer Chinmay Nirkhe
IBM WatsonOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about It is a long-standing open question in quantum complexity th...» It is a long-standing open question in quantum complexity theory whether the definition of non-deterministic quantum computation requires quantum witnesses ( -
Date:24MondayApril 2023Lecture
Foundations of Computer Science Seminar
More information Time 11:15 - 13:00Title A distribution testing oracle separation between QMA and QCMALocation Jacob Ziskind BuildingLecturer Chinmay Nirkhe
IBM WatsonOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about It is a long-standing open question in quantum complexity th...» It is a long-standing open question in quantum complexity theory whether the definition of non-deterministic quantum computation requires quantum witnesses ( -
Date:24MondayApril 2023Lecture
Approaching non-equilibrium: from machine learning to non-adiabatic dynamics
More information Time 14:00 - 15:00Location Perlman Chemical Sciences BuildingLecturer Dr. Sergei Tretiak
Theoretical Division & Center for Integrated Nanotechnologies (CINT), Los Alamos National LaboratoryOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Machine learning (ML) became a premier tool for modeling che...» Machine learning (ML) became a premier tool for modeling chemical processes and materials properties. For instance, ML interatomic potentials have become an efficient alternative to computationally expensive quantum chemistry simulations. In the case of reactive chemistry designing high-quality training data sets is crucial to overall model accuracy. To address this challenge, we develop a general reactive ML interatomic potential through unbiased active learning with an atomic configuration sampler inspired by nanoreactor molecular dynamics. The resulting model is then applied to study five distinct condensed-phase reactive chemistry systems: carbon solid-phase nucleation, graphene ring formation from acetylene, biofuel additives, combustion of methane and the spontaneous formation of glycine from early-earth small molecules. In all cases, the results closely match experiment and/or previous studies using traditional model chemistry methods. Altogether, explosive growth of user-friendly ML frameworks, designed for chemistry, demonstrates that the field is evolving towards physics-based models augmented by data science. I will also overview some applications of Non-adiabatic EXcited-state Molecular Dynamics (NEXMD) framework developed at several institutions. The NEXMD code is able to simulate tens of picoseconds photoinduced dynamics in large molecular systems. As an application, I will exemplify ultrafast coherent excitonic dynamics guided by intermolecular conical intersections. Here X-ray Raman signals are able to sensitively monitor the coherence evolution. The observed coherences have vibronic nature that survives multiple conical intersection passages for several hundred femtoseconds at room temperature. These spectroscopic signals are possible to measure at XFEL facilities and our modeling results allow us to understand and potentially manipulate excited state dynamics and energy transfer pathways toward optoelectronic applications.
References:
1. N. Fedik, R. Zubatyuk, N. Lubbers, J. S. Smith, B. Nebgen, R. Messerly, Y. W. Li, M. Kulichenko, A. I. Boldyrev, K. Barros, O. Isayev, and S. Tretiak “Extending machine learning beyond interatomic potentials for predicting molecular properties” Nature Rev. Chem. 6, 653 (2022).
2. G. Zhou, N. Lubbers, K. Barros, S. Tretiak, B. Nebgen, “Deep Learning of Dynamically Responsive Chemical Hamiltonians with Semi-Empirical Quantum Mechanics,” Proc. Nat. Acad. Sci. USA, 119 e2120333119 (2022)
3. S. Zhang, M. Z. Makos, R. B. Jadrich, E. Kraka, B. T. Nebgen, S. Tretiak, O. Isayev, N. Lubbers, R. A. Messerly, and J. S. Smith “Exploring the frontiers of chemistry with a general reactive machine learning potential,” (2023) https://chemrxiv.org/engage/chemrxiv/article-details/6362d132ca86b84c77ce166c
4. A. De Sio, E. Sommer, X. T. Nguyen, L. Gross, D. Popović, B. Nebgen, S. Fernandez-Alberti, S. Pittalis, C. A. Rozzi, E. Molinari, E. Mena-Osteritz, P. Bäuerle, T. Frauenheim, S. Tretiak, C. Lienau, “Intermolecular conical intersections in molecular aggregates” Nature Nanotech. 16, 63 – 68 (2021).
5. V. M. Freixas, D. Keefer, S. Tretiak, S. Fernandez-Alberti, and S. Mukamel, “Ultrafast coherent photoexcited dynamics in a trimeric dendrimer probed by X-ray stimulated-Raman signals,” Chem. Sci., 13, 6373 – 6384 (2022).
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Date:27ThursdayApril 2023Lecture
Activation and arrest of thermal pressurization in localized faults
More information Time 11:00 - 12:00Location Sussman Family Building for Environmental SciencesLecturer Nir Badt
The University of PennsylvaniaOrganizer Department of Earth and Planetary SciencesContact Abstract Show full text abstract about Thermal Pressurization (TP) is expected to be a dominant fri...» Thermal Pressurization (TP) is expected to be a dominant frictional weakening mechanism during earthquakes. However, due to experimental limitations there is a lack of direct evidence for the activation of TP in controlled laboratory conditions and most of our knowledge is derived from field studies and theoretical predictions. We present experiments performed by a rotary-shear apparatus where TP is activated in localized faults in Frederick diabase under constant normal stress of 50 MPa, confining pressure of 45 MPa and initial pore water pressure of 25 MPa. We show that by changing the permeability of the host rock we can control the shear stress drop during a TP event in the experimental fault. The TP events are short-lived in bare-surface faults as the opening of existing fractures around the fault plane drains the excess pore fluid. Wider, gouge-filled faults show more persistent frictional weakening, but at a slower rate, which is attributed to the compressibility of the gouge. In addition, we test the effects of transient fault dilation on the duration of a TP event through an expansion of the prevailing TP model, using a one-dimensional numerical simulation. We conclude that dynamic changes to the hydraulic diffusivity around the fault plane and persistent fault dilation, due to geometrical irregularities, are the most likely mechanisms to arrest TP during an earthquake.
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Date:27ThursdayApril 2023Lecture
Vision and AI
More information Time 12:15 - 13:15Title SpaText: Spatio-Textual Representation for Controllable Image GenerationLocation Jacob Ziskind BuildingLecturer Omri Avrahami
HUJIOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about Recent text-to-image diffusion models are able to generate c...» Recent text-to-image diffusion models are able to generate convincing results of unprecedented quality. However, it is nearly impossible to control the shapes of different regions/objects or their layout in a fine-grained fashion. Previous attempts to provide such controls were hindered by their reliance on a fixed set of labels. To this end, we present SpaText - a new method for text-to-image generation using open-vocabulary scene control. In addition to a global text prompt that describes the entire scene, the user provides a segmentation map where each region of interest is annotated by a free-form natural language description. Due to lack of large-scale datasets that have a detailed textual description for each region in the image, we choose to leverage the current large-scale text-to-image datasets and base our approach on a novel CLIP-based spatio-textual representation, and show its effectiveness on two state-of-the-art diffusion models: pixel-based and latent-based. In addition, we show how to extend the classifier-free guidance method in diffusion models to the multi-conditional case and present an alternative accelerated inference algorithm. Finally, we offer several automatic evaluation metrics and use them, in addition to FID scores and a user study, to evaluate our method and show that it achieves state-of-the-art results on image generation with free-form textual scene control.
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Date:27ThursdayApril 2023Lecture
Unraveling Heterotypic Cell Interactions and Cell Identity Transitions in Chronic Inflammation-Driven Intrahepatic Cholangiocarcinoma
More information Time 14:00 - 15:00Location Max and Lillian Candiotty BuildingLecturer Prof. Eli Pikarsky
The Lautenberg Center for Immunology and Cancer Research, The Hebrew University of JerusalemOrganizer Dwek Institute for Cancer Therapy ResearchContact -
Date:30SundayApril 2023Lecture
Oceanic Internal Gravity Waves: sources, sinks, and interactions with the eddy field.
More information Time 11:00 - 12:00Location Sussman Family Building for Environmental SciencesLecturer Roy Barkan
Tel Aviv UniversityOrganizer Department of Earth and Planetary SciencesContact Abstract Show full text abstract about The global oceanic overturning circulation and the transport...» The global oceanic overturning circulation and the transport of heat and dissolved gases are strongly controlled by upper ocean turbulent mixing that is driven by the breaking of internal gravity waves (IWs). Understanding the life cycle of oceanic IWs, from generation to dissipation, is therefore crucial for improving the representation of ocean mixing in climate models, which do not resolve the IW field. Oceanic IWs are observed to have a continuous energy distribution across spatial and temporal scales – an internal wave continuum – despite being forced primarily at near-inertial and tidal frequencies at large scales. The formation of the IW continuum and the associated energy transfer to dissipative scales have been traditionally attributed to wave-wave interactions and to Doppler shifting of wave frequencies by currents. Here, we provide evidence from realistic numerical simulations that oceanic eddies rapidly diffuse storm-forced wave energy across spatiotemporal scales, thereby playing a dominant role in the formation of the IW continuum and the corresponding spatiotemporal distribution of energy dissipation. We further demonstrate that winds can play an important role in damping oceanic IWs through current feedback. This results in a substantial reduction in wind power input at near inertial frequencies and a net energy sink for internal tides.
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Date:30SundayApril 2023Lecture
Soft Matter and Biomaterials Seminar: Cytoskeletal dynamics generate active liquid-liquid phase separation.
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Dr. Alexandra Tayar
Dept. Chemical and Biological Physics, WISOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Liquid-Liquid phase separation (LLPS) has been of fundamenta...» Liquid-Liquid phase separation (LLPS) has been of fundamental importance in the assembly of thermally driven materials and has recently emerged as an organizational principle for living systems. Biological phase separation is driven out of equilibrium through complex enzyme composition, chemical reactions, and mechanical activity, which reveals a gap in our understanding of this fundamental phenomenon. Here we study the impact of mechanical activity on LLPS. We design a DNA-based LLPS system coupled to flows through molecular motors and a cytoskeleton network. Active stress at an interface of a liquid droplet suppressed phase separation and stabilized a single-phase regime well beyond the equilibrium binodal curve. The phase diagram out of equilibrium revealed a 3-dimensional phase space that depends on temperature and local molecular activity. Similar dynamics and structures are observed in simulations, suggesting that suppression of liquid phase separation by active stress is a generic feature of liquid phase separation. -
Date:30SundayApril 2023Lecture
Molecules, Medals & Much More: What Can We All Learn From Exercise Physiology?
More information Time 15:00 - 16:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. John A. Hawley
Director, Mary MacKillop Institute for Health Research Director, Exercise and Nutrition Research Program Australian Catholic UniversityContact -
Date:01MondayMay 202304ThursdayMay 2023Conference
From individual to group decision making experiments and theory
More information Time 10:00 - 20:00Location The David Lopatie Conference CentreChairperson Nir GovHomepage -
Date:01MondayMay 2023Lecture
Systems Biology Seminar
More information Time 10:00 - 11:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchOrganizer Azrieli Institute for Systems BiologyContact -
Date:01MondayMay 2023Lecture
Systems Biology Seminar 2022-2023
More information Time 10:00 - 11:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchOrganizer Azrieli Institute for Systems BiologyContact -
Date:01MondayMay 2023Colloquia
Physics Colloquium
More information Time 11:15 - 12:30Title TBA...Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Vladan Vuletic Organizer Faculty of PhysicsContact Abstract Show full text abstract about TBA... ...» TBA... -
Date:01MondayMay 2023Lecture
Special Guest Seminar
More information Time 13:00 - 14:00Title “Polyglutamylation of microtubules controls neuronal functions and can cause neurodegeneration” & “Deciphering functions of tubulin modifications at the molecular level”Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Dr. Maria M Magiera & Dr. Carsten Janke Organizer Department of Molecular NeuroscienceContact -
Date:02TuesdayMay 2023Lecture
Mortality – and survival through microbial interactions - in abundant marine cyanobacteria
More information Time 11:30 - 12:30Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Prof. Daniel Sher
University of HaifaOrganizer Department of Plant and Environmental SciencesContact -
Date:02TuesdayMay 2023Lecture
Nature, nurture, and the neuroscience of parenthood
More information Time 12:30 - 13:30Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Bianca Jones Marlin
Zuckerman Institute Columbia University, New YorkOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Introduction: Bianca Jones Marlin, Ph.D. is a neuroscientist...» Introduction: Bianca Jones Marlin, Ph.D. is a neuroscientist and Herbert and Florence Irving Assistant Professor of Cell Research at the Zuckerman Institute at Columbia University in New York City. Her research investigates how organisms unlock innate behaviors at appropriate times, and how learned information is passed to subsequent generations via transgenerational epigenetic inheritance. Dr. Marlin combines neural imaging, behavior, and molecular genetics to uncover how learned behavior in the parent can become innate behavior in the offspring— work that promises to make a profound impact on societal brain health, mental well-being, and parenting. For more information about Dr. Marlin, visit www.biancajonesmarlin.com
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Date:02TuesdayMay 2023Lecture
Nature, nurture, and the neuroscience of parenthood
More information Time 12:30 - 13:30Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Bianca Jones Marlin
Zuckerman Institute Columbia University, New YorkOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Introduction: Bianca Jones Marlin, Ph.D. is a neuroscientist...» Introduction: Bianca Jones Marlin, Ph.D. is a neuroscientist and Herbert and Florence Irving Assistant Professor of Cell Research at the Zuckerman Institute at Columbia University in New York City. Her research investigates how organisms unlock innate behaviors at appropriate times, and how learned information is passed to subsequent generations via transgenerational epigenetic inheritance. Dr. Marlin combines neural imaging, behavior, and molecular genetics to uncover how learned behavior in the parent can become innate behavior in the offspring— work that promises to make a profound impact on societal brain health, mental well-being, and parenting. For more information about Dr. Marlin, visit www.biancajonesmarlin.com
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Date:02TuesdayMay 2023Lecture
Conspiring with the Enemy: A Unique Mechanism in Class A JDPs Stabilizes Oncogenic p53 Mutants
More information Time 14:00 - 15:00Location Gerhard M.J. Schmidt Lecture HallLecturer Dr. Guy Zoltsman
Dept. of Chemical & Structural Biology Weizmann InstituteOrganizer Department of Chemical and Structural BiologyContact -
Date:03WednesdayMay 2023Lecture
Machine Learning and Statistics Seminar
More information Time 11:15 - 12:30Title Exploiting Randomness in Machine LearningLocation Jacob Ziskind BuildingLecturer Ofir Lindenbaum
Bar-Ilan UniversityOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about Noise plays a central role in many machine learning algorith...» Noise plays a central role in many machine learning algorithms
