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March 25, 2015

  • Date:24MondayApril 2023

    Foundations of Computer Science Seminar

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    Time
    11:15 - 12:30
    Title
    A distribution testing oracle separation between QMA and QCMA
    Location
    Jacob Ziskind Building
    LecturerChinmay Nirkhe
    IBM Watson
    Organizer
    Department of Computer Science and Applied Mathematics
    Contact
    AbstractShow full text abstract about It is a long-standing open question in quantum complexity th...»
    It is a long-standing open question in quantum complexity theory whether the definition of non-deterministic quantum computation requires quantum witnesses (
    Lecture
  • Date:24MondayApril 2023

    Foundations of Computer Science Seminar

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    Time
    11:15 - 13:00
    Title
    A distribution testing oracle separation between QMA and QCMA
    Location
    Jacob Ziskind Building
    LecturerChinmay Nirkhe
    IBM Watson
    Organizer
    Department of Computer Science and Applied Mathematics
    Contact
    AbstractShow full text abstract about It is a long-standing open question in quantum complexity th...»
    It is a long-standing open question in quantum complexity theory whether the definition of non-deterministic quantum computation requires quantum witnesses (
    Lecture
  • Date:24MondayApril 2023

    Foundations of Computer Science Seminar

    More information
    Time
    11:15 - 13:00
    Title
    A distribution testing oracle separation between QMA and QCMA
    Location
    Jacob Ziskind Building
    LecturerChinmay Nirkhe
    IBM Watson
    Organizer
    Department of Computer Science and Applied Mathematics
    Contact
    AbstractShow full text abstract about It is a long-standing open question in quantum complexity th...»
    It is a long-standing open question in quantum complexity theory whether the definition of non-deterministic quantum computation requires quantum witnesses (
    Lecture
  • Date:24MondayApril 2023

    Approaching non-equilibrium: from machine learning to non-adiabatic dynamics

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    Time
    14:00 - 15:00
    Location
    Perlman Chemical Sciences Building
    LecturerDr. Sergei Tretiak
    Theoretical Division & Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Machine learning (ML) became a premier tool for modeling che...»
    Machine learning (ML) became a premier tool for modeling chemical processes and materials properties. For instance, ML interatomic potentials have become an efficient alternative to computationally expensive quantum chemistry simulations. In the case of reactive chemistry designing high-quality training data sets is crucial to overall model accuracy. To address this challenge, we develop a general reactive ML interatomic potential through unbiased active learning with an atomic configuration sampler inspired by nanoreactor molecular dynamics. The resulting model is then applied to study five distinct condensed-phase reactive chemistry systems: carbon solid-phase nucleation, graphene ring formation from acetylene, biofuel additives, combustion of methane and the spontaneous formation of glycine from early-earth small molecules. In all cases, the results closely match experiment and/or previous studies using traditional model chemistry methods. Altogether, explosive growth of user-friendly ML frameworks, designed for chemistry, demonstrates that the field is evolving towards physics-based models augmented by data science. I will also overview some applications of Non-adiabatic EXcited-state Molecular Dynamics (NEXMD) framework developed at several institutions. The NEXMD code is able to simulate tens of picoseconds photoinduced dynamics in large molecular systems. As an application, I will exemplify ultrafast coherent excitonic dynamics guided by intermolecular conical intersections. Here X-ray Raman signals are able to sensitively monitor the coherence evolution. The observed coherences have vibronic nature that survives multiple conical intersection passages for several hundred femtoseconds at room temperature. These spectroscopic signals are possible to measure at XFEL facilities and our modeling results allow us to understand and potentially manipulate excited state dynamics and energy transfer pathways toward optoelectronic applications.

    References:
    1. N. Fedik, R. Zubatyuk, N. Lubbers, J. S. Smith, B. Nebgen, R. Messerly, Y. W. Li, M. Kulichenko, A. I. Boldyrev, K. Barros, O. Isayev, and S. Tretiak “Extending machine learning beyond interatomic potentials for predicting molecular properties” Nature Rev. Chem. 6, 653 (2022).
    2. G. Zhou, N. Lubbers, K. Barros, S. Tretiak, B. Nebgen, “Deep Learning of Dynamically Responsive Chemical Hamiltonians with Semi-Empirical Quantum Mechanics,” Proc. Nat. Acad. Sci. USA, 119 e2120333119 (2022)
    3. S. Zhang, M. Z. Makos, R. B. Jadrich, E. Kraka, B. T. Nebgen, S. Tretiak, O. Isayev, N. Lubbers, R. A. Messerly, and J. S. Smith “Exploring the frontiers of chemistry with a general reactive machine learning potential,” (2023) https://chemrxiv.org/engage/chemrxiv/article-details/6362d132ca86b84c77ce166c
    4. A. De Sio, E. Sommer, X. T. Nguyen, L. Gross, D. Popović, B. Nebgen, S. Fernandez-Alberti, S. Pittalis, C. A. Rozzi, E. Molinari, E. Mena-Osteritz, P. Bäuerle, T. Frauenheim, S. Tretiak, C. Lienau, “Intermolecular conical intersections in molecular aggregates” Nature Nanotech. 16, 63 – 68 (2021).
    5. V. M. Freixas, D. Keefer, S. Tretiak, S. Fernandez-Alberti, and S. Mukamel, “Ultrafast coherent photoexcited dynamics in a trimeric dendrimer probed by X-ray stimulated-Raman signals,” Chem. Sci., 13, 6373 – 6384 (2022).

    Lecture
  • Date:27ThursdayApril 2023

    Activation and arrest of thermal pressurization in localized faults

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    Time
    11:00 - 12:00
    Location
    Sussman Family Building for Environmental Sciences
    LecturerNir Badt
    The University of Pennsylvania
    Organizer
    Department of Earth and Planetary Sciences
    Contact
    AbstractShow full text abstract about Thermal Pressurization (TP) is expected to be a dominant fri...»
    Thermal Pressurization (TP) is expected to be a dominant frictional weakening mechanism during earthquakes. However, due to experimental limitations there is a lack of direct evidence for the activation of TP in controlled laboratory conditions and most of our knowledge is derived from field studies and theoretical predictions. We present experiments performed by a rotary-shear apparatus where TP is activated in localized faults in Frederick diabase under constant normal stress of 50 MPa, confining pressure of 45 MPa and initial pore water pressure of 25 MPa. We show that by changing the permeability of the host rock we can control the shear stress drop during a TP event in the experimental fault. The TP events are short-lived in bare-surface faults as the opening of existing fractures around the fault plane drains the excess pore fluid. Wider, gouge-filled faults show more persistent frictional weakening, but at a slower rate, which is attributed to the compressibility of the gouge. In addition, we test the effects of transient fault dilation on the duration of a TP event through an expansion of the prevailing TP model, using a one-dimensional numerical simulation. We conclude that dynamic changes to the hydraulic diffusivity around the fault plane and persistent fault dilation, due to geometrical irregularities, are the most likely mechanisms to arrest TP during an earthquake.
    Lecture
  • Date:27ThursdayApril 2023

    Vision and AI

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    Time
    12:15 - 13:15
    Title
    SpaText: Spatio-Textual Representation for Controllable Image Generation
    Location
    Jacob Ziskind Building
    LecturerOmri Avrahami
    HUJI
    Organizer
    Department of Computer Science and Applied Mathematics
    Contact
    AbstractShow full text abstract about Recent text-to-image diffusion models are able to generate c...»
    Recent text-to-image diffusion models are able to generate convincing results of unprecedented quality. However, it is nearly impossible to control the shapes of different regions/objects or their layout in a fine-grained fashion. Previous attempts to provide such controls were hindered by their reliance on a fixed set of labels. To this end, we present SpaText - a new method for text-to-image generation using open-vocabulary scene control. In addition to a global text prompt that describes the entire scene, the user provides a segmentation map where each region of interest is annotated by a free-form natural language description. Due to lack of large-scale datasets that have a detailed textual description for each region in the image, we choose to leverage the current large-scale text-to-image datasets and base our approach on a novel CLIP-based spatio-textual representation, and show its effectiveness on two state-of-the-art diffusion models: pixel-based and latent-based. In addition, we show how to extend the classifier-free guidance method in diffusion models to the multi-conditional case and present an alternative accelerated inference algorithm. Finally, we offer several automatic evaluation metrics and use them, in addition to FID scores and a user study, to evaluate our method and show that it achieves state-of-the-art results on image generation with free-form textual scene control.

    Lecture
  • Date:27ThursdayApril 2023

    Unraveling Heterotypic Cell Interactions and Cell Identity Transitions in Chronic Inflammation-Driven Intrahepatic Cholangiocarcinoma

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    Time
    14:00 - 15:00
    Location
    Max and Lillian Candiotty Building
    LecturerProf. Eli Pikarsky
    The Lautenberg Center for Immunology and Cancer Research, The Hebrew University of Jerusalem
    Organizer
    Dwek Institute for Cancer Therapy Research
    Contact
    Lecture
  • Date:30SundayApril 2023

    Oceanic Internal Gravity Waves: sources, sinks, and interactions with the eddy field. 

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    Time
    11:00 - 12:00
    Location
    Sussman Family Building for Environmental Sciences
    LecturerRoy Barkan
    Tel Aviv University
    Organizer
    Department of Earth and Planetary Sciences
    Contact
    AbstractShow full text abstract about The global oceanic overturning circulation and the transport...»
    The global oceanic overturning circulation and the transport of heat and dissolved gases are strongly controlled by upper ocean turbulent mixing that is driven by the breaking of internal gravity waves (IWs). Understanding the life cycle of oceanic IWs, from generation to dissipation, is therefore crucial for improving the representation of ocean mixing in climate models, which do not resolve the IW field.  Oceanic IWs are observed to have a continuous energy distribution across spatial and temporal scales – an internal wave continuum – despite being forced primarily at near-inertial and tidal frequencies at large scales. The formation of the IW continuum and the associated energy transfer to dissipative scales have been traditionally attributed to wave-wave interactions and to Doppler shifting of wave frequencies by currents. Here, we provide evidence from realistic numerical simulations that oceanic eddies rapidly diffuse storm-forced wave energy across spatiotemporal scales, thereby playing a dominant role in the formation of the IW continuum and the corresponding spatiotemporal distribution of energy dissipation. We further demonstrate that winds can play an important role in damping oceanic IWs through current feedback.  This results in a substantial reduction in wind power input at near inertial frequencies and a net energy sink for internal tides.
    Lecture
  • Date:30SundayApril 2023

    Soft Matter and Biomaterials Seminar: Cytoskeletal dynamics generate active liquid-liquid phase separation.

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    Time
    11:00 - 12:00
    Location
    Perlman Chemical Sciences Building
    LecturerDr. Alexandra Tayar
    Dept. Chemical and Biological Physics, WIS
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about Liquid-Liquid phase separation (LLPS) has been of fundamenta...»
    Liquid-Liquid phase separation (LLPS) has been of fundamental importance in the assembly of thermally driven materials and has recently emerged as an organizational principle for living systems. Biological phase separation is driven out of equilibrium through complex enzyme composition, chemical reactions, and mechanical activity, which reveals a gap in our understanding of this fundamental phenomenon. Here we study the impact of mechanical activity on LLPS. We design a DNA-based LLPS system coupled to flows through molecular motors and a cytoskeleton network. Active stress at an interface of a liquid droplet suppressed phase separation and stabilized a single-phase regime well beyond the equilibrium binodal curve. The phase diagram out of equilibrium revealed a 3-dimensional phase space that depends on temperature and local molecular activity. Similar dynamics and structures are observed in simulations, suggesting that suppression of liquid phase separation by active stress is a generic feature of liquid phase separation.
    Lecture
  • Date:30SundayApril 2023

    Molecules, Medals & Much More: What Can We All Learn From Exercise Physiology?

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    Time
    15:00 - 16:00
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    LecturerProf. John A. Hawley
    Director, Mary MacKillop Institute for Health Research Director, Exercise and Nutrition Research Program Australian Catholic University
    Contact
    Lecture
  • Date:01MondayMay 202304ThursdayMay 2023

    From individual to group decision making experiments and theory

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    Time
    10:00 - 20:00
    Location
    The David Lopatie Conference Centre
    Chairperson
    Nir Gov
    Homepage
    Conference
  • Date:01MondayMay 2023

    Systems Biology Seminar

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    Time
    10:00 - 11:00
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    Organizer
    Azrieli Institute for Systems Biology
    Contact
    Lecture
  • Date:01MondayMay 2023

    Systems Biology Seminar 2022-2023

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    Time
    10:00 - 11:00
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    Organizer
    Azrieli Institute for Systems Biology
    Contact
    Lecture
  • Date:01MondayMay 2023

    Physics Colloquium

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    Time
    11:15 - 12:30
    Title
    TBA...
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. Vladan Vuletic
    Organizer
    Faculty of Physics
    Contact
    AbstractShow full text abstract about TBA... ...»
    TBA...
    Colloquia
  • Date:01MondayMay 2023

    Special Guest Seminar

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    Time
    13:00 - 14:00
    Title
    “Polyglutamylation of microtubules controls neuronal functions and can cause neurodegeneration” & “Deciphering functions of tubulin modifications at the molecular level”
    Location
    Arthur and Rochelle Belfer Building for Biomedical Research
    LecturerDr. Maria M Magiera & Dr. Carsten Janke
    Organizer
    Department of Molecular Neuroscience
    Contact
    Lecture
  • Date:02TuesdayMay 2023

    Mortality – and survival through microbial interactions - in abundant marine cyanobacteria

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    Time
    11:30 - 12:30
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerProf. Daniel Sher
    University of Haifa
    Organizer
    Department of Plant and Environmental Sciences
    Contact
    Lecture
  • Date:02TuesdayMay 2023

    Nature, nurture, and the neuroscience of parenthood

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    Time
    12:30 - 13:30
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. Bianca Jones Marlin
    Zuckerman Institute Columbia University, New York
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Introduction: Bianca Jones Marlin, Ph.D. is a neuroscientist...»
    Introduction: Bianca Jones Marlin, Ph.D. is a neuroscientist and Herbert and Florence Irving Assistant Professor of Cell Research at the Zuckerman Institute at Columbia University in New York City. Her research investigates how organisms unlock innate behaviors at appropriate times, and how learned information is passed to subsequent generations via transgenerational epigenetic inheritance. Dr. Marlin combines neural imaging, behavior, and molecular genetics to uncover how learned behavior in the parent can become innate behavior in the offspring— work that promises to make a profound impact on societal brain health, mental well-being, and parenting. For more information about Dr. Marlin, visit www.biancajonesmarlin.com
    Lecture
  • Date:02TuesdayMay 2023

    Nature, nurture, and the neuroscience of parenthood

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    Time
    12:30 - 13:30
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerProf. Bianca Jones Marlin
    Zuckerman Institute Columbia University, New York
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Introduction: Bianca Jones Marlin, Ph.D. is a neuroscientist...»
    Introduction: Bianca Jones Marlin, Ph.D. is a neuroscientist and Herbert and Florence Irving Assistant Professor of Cell Research at the Zuckerman Institute at Columbia University in New York City. Her research investigates how organisms unlock innate behaviors at appropriate times, and how learned information is passed to subsequent generations via transgenerational epigenetic inheritance. Dr. Marlin combines neural imaging, behavior, and molecular genetics to uncover how learned behavior in the parent can become innate behavior in the offspring— work that promises to make a profound impact on societal brain health, mental well-being, and parenting. For more information about Dr. Marlin, visit www.biancajonesmarlin.com
    Lecture
  • Date:02TuesdayMay 2023

    Conspiring with the Enemy: A Unique Mechanism in Class A JDPs Stabilizes Oncogenic p53 Mutants

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    Time
    14:00 - 15:00
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerDr. Guy Zoltsman
    Dept. of Chemical & Structural Biology Weizmann Institute
    Organizer
    Department of Chemical and Structural Biology
    Contact
    Lecture
  • Date:03WednesdayMay 2023

    Machine Learning and Statistics Seminar

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    Time
    11:15 - 12:30
    Title
    Exploiting Randomness in Machine Learning
    Location
    Jacob Ziskind Building
    LecturerOfir Lindenbaum
    Bar-Ilan University
    Organizer
    Department of Computer Science and Applied Mathematics
    Contact
    AbstractShow full text abstract about Noise plays a central role in many machine learning algorith...»
    Noise plays a central role in many machine learning algorithms
    Lecture

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