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April 28, 2015
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Date:07ThursdayFebruary 2019Lecture
Frustrations in the treatment of Ovarian Cancer
More information Time 14:00 - 15:00Title Special Guest SeminarLocation Max and Lillian Candiotty BuildingLecturer Prof. Uziel Beller
Shaare Zedek Medical Center Jerusalem & Assuata AshdodOrganizer Department of Immunology and Regenerative BiologyContact -
Date:07ThursdayFebruary 2019Lecture
Pelletron meeting - by invitation only
More information Time 16:00 - 17:45Contact -
Date:10SundayFebruary 2019Lecture
Chemical and Biological Physics Guest Seminar
More information Time 09:30 - 09:30Title Computational Modeling of Large Biomolecular Systems: Methodology and a Case Study of the Smartest Molecule (an NMDA Receptor in the Brain)Location Perlman Chemical Sciences BuildingLecturer Dr. Anton V. Sinitskiy
Stanford UniversityOrganizer Department of Chemical and Biological PhysicsContact Abstract Show full text abstract about In this talk targeted at a wide audience of chemists, I will...» In this talk targeted at a wide audience of chemists, I will start with a story about the ‘smartest’ molecule. Neuronal NMDA receptors, in my opinion, deserve this name, because they play the key role in the molecular mechanisms of learning, memory formation, and abstract reasoning. Also, malfunctioning NMDA receptors are involved in numerous neurological disorders, including schizophrenia, epilepsy, and Alzheimer’s disease. NMDA receptors are complicated and rich in behavior, and even the most
up-to-date experimental methods yield only a fragmented picture of these biomolecules. How do their known structures relate to their biologically relevant functional states? Through what mechanisms do post-translational modifications (specifically, glycosylation) affect their physiological properties? Computational modeling offers unique insights into these questions, and I will outline my work in this field. Simulating NMDA receptors is a formidable task, though. In the second half of my talk, I will discuss how advances in methodology could facilitate studies of such large molecular and biomolecular systems. Specifically, I will focus on the concepts of coarse-graining, Markov state modeling, and mixed-resolution hybrid modeling, highlighting my work in this field [including ultra-coarse-grained modeling, and quantum mechanics / coarse-grained molecular mechanics (QM/CG-MM) approach]. Finally, I will briefly touch on the possible use of machine learning and deep learning networks in molecular modeling. In general, further advances in the theory and methodology of modeling will result in new opportunities for studying complex phenomena, such as learning and memory, with unprecedented resolution.
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Date:10SundayFebruary 2019Lecture
Uncertainty in aquatic ecosystems: living with it, managing with it…
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Gideon Gal
Kinneret Limnological Laboratory, (KLL)Organizer Department of Earth and Planetary SciencesContact -
Date:10SundayFebruary 2019Lecture
Self-assemblies of designed B-sheet peptides as hydrogels, coatings and drug delivery nanoparticles
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Prof. Hanna Rapaport
Department of Biotechnology Engineering and the Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the NegevOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Peptides in -sheet conformations have been developed in our...» Peptides in -sheet conformations have been developed in our lab in a bottom up fashion towards various biomedical applications. Hydrogels of -sheet peptides will be briefly introduced and the talk will then focus on peptide coatings for induced osseointegration of titanium implants and peptides enhanced nanoparticles for intracellularly targeted drug delivery. -
Date:10SundayFebruary 2019Lecture
Recovering exact conditions at semi-local DFT cost to mitigate energy and density errors for transition metal chemistry
More information Time 14:00 - 15:00Location Perlman Chemical Sciences BuildingLecturer Prof. Heather Kulik
Dept. Chemical Engineering, MITOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Accurate prediction of electronic properties of open-shell t...» Accurate prediction of electronic properties of open-shell transition metal complexes is essential for materials design and catalysis. Nevertheless, the properties that make these materials and molecules so compelling also make them extremely challenging to study accurately with any computational model. Although density functional theory (DFT) remains the method of choice for its balance of speed and accuracy in computational screening, semi-local approximations in density functional theory (DFT), such as the generalized gradient approximation (GGA), suffer from many electron self-interaction errors that causes them to predict erroneous spin states and geometries, barrier heights and dissociation energies, and orbital energies, to name a few. I will outline our recent efforts to both understand and correct these errors with a focus on predictive modeling of transition metal chemistry : i) We describe how common approximations to recover the derivative discontinuity (i.e., DFT+U and global or range separated hybrids) affect the density properties of transition metal complexes and correlated solids with respect to exact references, ii) We demonstrate recovery of the flat-plane condition that is a union of the requirement of piecewise linearity with electron removal or addition as well as unchanged energy when changing the spin of an electron in isoenergetic orbitals. We accomplish this at no computational cost over semi-local DFT by building from scratch our judiciously-modified DFT (jmDFT) functionals designed to oppose errors inherent in semi-local functionals. We show the connection to but divergence of these functional forms from hybrid expressions and standard DFT+U explain why both common approximations increase static correlation errors. We also present fundamental expressions for determining these parameters, mitigating any empiricism in the method. iii) Finally, time permitting, I will describe our efforts to overcome DFT inaccuracies through the development of data-driven structure-method relationships, including in artificial neural networks that can predict sensitivity of spin-state ordering in transition metal complexes to changes in the exchange-correlation functional.
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Date:11MondayFebruary 2019Colloquia
"Bio-organic systems for Electrocatalytic CO2 recycling"
More information Time 11:00 - 12:15Location Perlman Chemical Sciences BuildingLecturer Prof. Serdar Sariciftci
Linz-Organic Photovoltaic Cells institute in thy Johannes Kepler University of LinzOrganizer Faculty of ChemistryContact -
Date:11MondayFebruary 2019Lecture
Chemical tools for manipulating the topology of polymer networks
More information Time 11:00 - 12:00Location Helen and Milton A. Kimmelman BuildingLecturer Prof. Jeremiah A. Johnson
Department of Chemistry, Massachusetts Institute of TechnologyOrganizer Department of Molecular Chemistry and Materials ScienceContact -
Date:11MondayFebruary 2019Lecture
Imm Special Guest Seminar:Dr. Fernando Racimo and Dr. Martin Sikora
More information Time 11:00 - 12:00Location Wolfson Building for Biological ResearchLecturer Dr. Fernando Racimo and Dr. Martin Sikora Organizer Department of Systems ImmunologyContact -
Date:11MondayFebruary 2019Lecture
Autophagy, the master of selective protein recycling
More information Time 11:30 - 11:30Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Prof. Richard D. Vierstra
George & Charmaine Mallinckrodt Professor, Department of Biology, Washington University in St. Louis, USAOrganizer Department of Plant and Environmental SciencesHomepage Contact -
Date:11MondayFebruary 2019Lecture
IMM Guest seminar- Prof. Peter J. Murray will lecture on "Immune regulation by amino acid metabolism."
More information Time 12:30 - 12:30Location Wolfson Building for Biological ResearchLecturer Prof. Peter J. Murray
Immunoregulation Group, Max Planck Institute of Biochemistry, Martinsried, Germany.Organizer Department of Systems ImmunologyContact -
Date:11MondayFebruary 2019Lecture
Plasmonic photo-catalysis - “Hot electrons” or just heating?”
More information Time 14:00 - 15:00Location Perlman Chemical Sciences BuildingLecturer Prof. Yonatan Dubi
Department of Chemistry & The Ilze-Katz Institute for Nano-Scale Science and Technology, BGUOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about What happens to electrons in a metal when they are illuminat...» What happens to electrons in a metal when they are illuminated? This fundamental problem is a driving force in shaping modern physics since the discovery of the photo-electric effect. In recent years, this problem resurfaced from a new angle, owing to developments in the field of nano-plasmonics, where metallic nanostructures give rise to resonantly enhanced local electromagnetic fields (surface plasmons). Presumably, these plasmons can transfer their energy to the electrons in the metal very efficiently, creating “hot electrons”, i.e. energetic electrons out of equilibrium. Such energetic electrons have been demonstrated to be useful in a variety of ways, most recently in catalysis of chemical reactions.
Or have they?
In this talk we argue that what appears to be hot-electron-mediated photo-catalysis is really a simple heating effect. We present a theory for plasmonic hot-electron generation, which takes into account non-equilibrium as well as thermal effects. Specifically, we consider the effect of both photons and phonons on the electron distribution function, and calculate self-consistently the full electron distribution and the increase in electron and lattice temperatures above ambient conditions (as observed experimentally), thus going well beyond the limit of existing theories. Calculating the efficiency of hot-electron generation, we find that it is extremely small, and most power goes into heating. We use this theory to re-interpret data from central experiments claiming hot-electron generation, and find that the data fits remarkably a simple theory of heating. Finally, we suggest control experiments to further test our conclusions, and discuss the prospect of using the hot electrons for photocatalysis.
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Date:11MondayFebruary 2019Lecture
Symbolic dynamics for maps on surfaces
More information Time 14:15 - 14:15Location Edna and K.B. Weissman Building of Physical SciencesLecturer WIS, Prof. Omri Sarig Organizer Department of Physics of Complex SystemsContact Abstract Show full text abstract about : I will review some of the ideas used by mathematicians to...» : I will review some of the ideas used by mathematicians to study the ergodic theory of "chaotic" smooth invertible maps on surfaces. Symbolic dynamics allows to "change coordinates" and pass to a model similar to the configuration space of a 1D lattice gas model. Analogies to equilibrium statistical physics can then be employed to study the dynamic and stochastic properties of the system. -
Date:12TuesdayFebruary 2019Lecture
eIF1A promotes translation of cell cycle genes
More information Time 10:00 - 10:30Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Urmila Sehrawat
Department of Biomolecular Sciences-WISOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Protein synthesis is linked to cell proliferation and its de...» Protein synthesis is linked to cell proliferation and its deregulation contributes to diseases such as cancer. eIF1A plays a key role in scanning and AUG selection and differentially affects translation of distinct mRNAs. Its unstructured N-terminal tail (NTT) is frequently mutated in several malignancies. Here, we show that eIF1A is essential for cell proliferation and cell-cycle progression. Ribosome-profiling of eIF1A knockdown cells revealed a substantial reduction in protein synthesis, with particular enrichment of cell-cycle mRNAs. The downregulated genes are predominantly characterized by lengthy 5’UTR. On the other hand, eIF1A depletion caused a broad stimulation of initiation in 5’UTRs at near-cognate AUG. Importantly, cancer-associated eIF1A-NTT mutants augment the positive effect of eIF1A on long 5’UTR while hardly affecting AUG selection. Our findings suggest that reduced binding of eIF1A NTT mutants to the ribosome retains its open state and facilitate scanning of long 5’UTR-containing cell cycle genes.
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Date:12TuesdayFebruary 2019Lecture
Dissecting pathways of neuroinflammation in Gaucher disease
More information Time 10:30 - 11:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Ayelet Vardi
Department of Biomolecular Sciences-WISOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Gaucher disease (GD), a common lysosomal storage disorder (L...» Gaucher disease (GD), a common lysosomal storage disorder (LSD), is caused by
mutations in the GBA1 gene. This gene encodes the lysosomal hydrolase
glucocerebrosidase (GlcCerase), and in the disease, the lipid glucosylceramide
(GlcCer) accumulates within the cell. Although neuronopathic Gaucher disease (nGD) was described over a hundred years ago, little is known about the mechanisms leading from GlcCer accumulation to neuronal cell death and inflammation. Recently, our laboratory identified induction of the type 1 interferon (IFN) response in nGD mice. The IFN response is the fundamental cellular defense mechanism against viral infection, however it can also be induced in the absence of infection. Ablation of the IFN receptor (IFNAR) did not have any effect on the viability of nGD mice. Therefore, we took availability of quadrat deficient mice where four adaptors of main pathogen recognition receptors (PRR) are blocked. Ablation of all the pathways leading to IFN production did not have effect on mice life span. Nevertheless, we utilized these results to conduct an RNA sequencing study with the goal of defining what are the inflammatory pathways lead to disease development and, eventually, to mice death.
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Date:12TuesdayFebruary 2019Lecture
Transcriptional memory and proteostasis at the single cell level
More information Time 11:00 - 12:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer David Suter, PhD
Assistant professor Institute of Bioengineering Ecole Polytechnique Federale de Lausanne (EPFL)Organizer Department of Molecular Cell BiologyContact -
Date:12TuesdayFebruary 2019Lecture
Dr. Boaz Katz - We do not know how supernovae explode
More information Time 12:00 - 12:00Title We do not know how supernovae explodeLocation Dolfi and Lola Ebner AuditoriumLecturer Prof. Boaz Katz Organizer Communications and Spokesperson DepartmentHomepage Contact -
Date:12TuesdayFebruary 2019Lecture
Posing a contortionist E3 ubiquitin ligase for stepwise regulation of cell division
More information Time 14:00 - 15:00Location Wolfson Building for Biological ResearchLecturer Prof. Brenda Schulman Organizer Department of Chemical and Structural BiologyContact -
Date:12TuesdayFebruary 2019Lecture
Action evaluation, planning and replay
More information Time 14:00 - 15:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. Nathaniel Daw
Princeton Neuroscience Institute and Dept of Psychology Princeton UniversityOrganizer Department of Brain SciencesContact Abstract Show full text abstract about In many tasks, such as mazes or social interactions, effecti...» In many tasks, such as mazes or social interactions, effective decision making typically requires enumerating the expected outcomes of candidate actions over a series of subsequent events. Because of the computational complexity of such evaluation, it is believed that human and animal brains use a range of shortcuts to simplify or approximate it. I review behavioral and neural evidence that humans rationally trade off exact and approximate evaluation in such sequential decision making. This research offers a new perspective on healthy behaviors, like habits, and pathological ones, like compulsion, which are both viewed as approximate evaluations that fail to incorporate experiences relevant to a decision and instead rely on inappropriate or out-of-date evaluations. I also present new theoretical and experimental work that aims to address the positive counterpart to such neglect: which particular events are considered, in which circumstances, to support choice. This brings the reach of the framework to many new phenomena, including pre-computation for future choices, nonlocal activity in the hippocampal place system, consolidation during sleep, and a new range of disordered symptoms such as craving, hallucinations, and rumination.
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Date:12TuesdayFebruary 2019Lecture
Regulatory Mechanisms of Myeloid Cells in the Central Nervous System
More information Time 16:00 - 17:00Location Nella and Leon Benoziyo Building for Brain ResearchLecturer Hila Ben-Yehuda (PhD Thesis Defense)
Michal Schwartz Lab, Dept of Neurobiology, WISOrganizer Department of Brain SciencesContact
