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ינואר 01, 2013

  • Date:23שלישיינואר 2018

    Functions and regulation of 3D genome organisation in development and disease

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    שעה
    10:00 - 11:00
    מיקום
    בניין ארתור ורושל בלפר למחקר ביורפואי
    מרצהProf. Francois Spitz
    (Epi)Genomics of Animal Development Unit Department of Developmental and Stem Cell Biology Institut Pasteur Paris (France)
    מארגן
    מכון עזריאלי למערכות ביולוגיות
    צרו קשר
    תקצירShow full text abstract about The complex hierarchy of three-dimensional patterns that cha...»
    The complex hierarchy of three-dimensional patterns that characterize the 3D folding of mammalian chromosomes appears as an important element in controlling gene expression. At the megabase scale, chromosomes are partitioned into domains that define two main compartments, corresponding to transcriptionally active and inactive regions, respectively. Each compartment domain is itself composed of distinct domains characterized by increased self-interactions called topological domains (TADs). Recent high-resolution Hi-C approaches revealed a finer-scale organisation of the genome in smaller “contact domains”, often associated with loops linking specific points. At these different scales, the spatial organisation of the genome shows tight correlation with its chromatin structure and its transcriptional activity. However, while steady progress is being made in describing the 3D folding of the genome at increased resolution, the mechanisms that determine this folding, its dynamic properties and the functional implications of these emerging features are still poorly understood.
    We use advanced genome tagging and engineering strategies, as well as targeted inactivation of factors involved in chromosomal folding to unravel the elements and mechanisms that drive the folding of large loci in specific yet dynamic conformations and their influence on gene expression. Our recent results show that the complex patterns of vertebrate HiC maps result from the superimposition of two distinct mechanisms: 1) a cohesin-independent mechanism which brings together regions of similar chromatin states 2) a cohesin-dependent folding that associate different small compartments into TADs. Within TADS, we show as well that enhancers are not acting in a homogeneous manner, but that their influence is distributed in complex patterns, partially guided by the underlying structure. I will discuss the different implications of these findings for our views of genome organisation.
    הרצאה
  • Date:23שלישיינואר 2018

    A deep 3D view into cells using cryo-scanning transmission electron tomography

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    שעה
    10:00 - 11:00
    מיקום
    בניין לביוכימיה על שם נלה וליאון בנוזיו
    מרצהDr. Shron G. Wolf
    Department of Chemical Research Support- WIS
    מארגן
    המחלקה למדעים ביומולקולריים
    צרו קשר
    תקצירShow full text abstract about CryoSTEM tomography (CSTET) is a novel combination [1-5] of ...»
    CryoSTEM tomography (CSTET) is a novel combination [1-5] of two well-established techniques: cryo-electron tomography (CET) and scanning transmission electron microscopy (STEM). Cryogenic fixation allows for the most faithful preservation of biological macromolecules, tissues and cells. By preserving the cryogenic temperature and maintaining a contamination-free environment inside the electron microscope, CET for such cryo-preserved specimens have resulted in major advances in their characterization [6]. However, due to technical constraints, sample thickness amenable to viewing by CET is limited (up to ~400 nm).
    STEM provides a possibility for relieving these limitations because contrast and signal are produced incoherently. The natural limit for sample thickness is extended three-fold for CSTET, meaning that whole vitrified mammalian cells can be imaged at ~3-4 nm resolution for regions up to ~1 μm in thickness. For spreading cells, many inter- organelle contacts and morphologies can be studied. In addition, CSTET combined with Energy Dispersive X-ray Spectroscopy (EDX) allows for on-the-spot chemical characterization of cell contents.
    References
    1. Wolf, S.G., L. Houben, and M. Elbaum, Cryo-scanning transmission electron tomography of vitrified cells. Nature Methods, 2014. 11(4): p. 423-428.
    2. Wolf, S.G., P. Rez, and M. Elbaum, Phosphorus detection in vitrified bacteria by cryo- STEM annular dark-field analysis. J Microsc, 2015. 260(2): p. 227-33.
    3. Elbaum, M., S.G. Wolf, and L. Houben, Cryo-scanning transmission electron tomography of biological cells. MRS Bulletin, 2016. 41(07): p. 542-548.
    4. Wolf, S.G., E. Shimoni, M. Elbaum, and L. Houben, STEM Tomography in Biology, in Cellular Imaging, Electron Tomography and Related Techniques, E.G. Hanssen, Editor. 2017, Springer, in press.
    5. Wolf, S.G., Y. Mutsafi, T. Dadosh, T. Ilani, Z. Lansky, B. Horowitz, S. Rubin, M. Elbaum, and D. Fass, 3D visualization of mitochondrial solid-phase calcium stores in whole cells. Elife, 2017. 6: e29929.
    6. Beck, M. and W. Baumeister, Cryo-Electron Tomography: Can it Reveal the Molecular Sociology of Cells in Atomic Detail? Trends Cell Biol, 2016. 26(11): p. 825-837.
    הרצאה
  • Date:23שלישיינואר 2018

    Students Seminar

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    שעה
    11:15 - 12:30
    מיקום
    בניין וולפסון למחקר ביולוגי
    מרצהProf. Uri Alon's lab
    מארגן
    המחלקה לביולוגיה מולקולרית של התא
    צרו קשר
    הרצאה
  • Date:23שלישיינואר 2018

    Photorespiration is an adaptive response of plants to oxidative stress

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    שעה
    11:30 - 11:30
    מיקום
    בניין לביוכימיה על שם נלה וליאון בנוזיו
    מרצהProf. Agepati S. Raghavendra
    FNA, FASc, FTWAS, JC Bose National Fellow, School of Life Sciences, Dept. of Plant Sciences, University of Hyderabad, Hyderabad, India
    מארגן
    המחלקה למדעי הצמח והסביבה
    צרו קשר
    הרצאה
  • Date:23שלישיינואר 2018

    Pay attention and learn from experience!: The transcriptional representation of experience and the role of the claustrum in attention

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    שעה
    12:30 - 12:30
    מיקום
    אולם הרצאות ע"ש גרהרד שמידט
    מרצהDr. Ami Citri
    ELSC, The Hebrew University of Jerusalem
    מארגן
    המחלקה למדעי המוח
    צרו קשר
    הרצאה
  • Date:24רביעיינואר 2018

    Developmental Club Series 2017-2018

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    שעה
    10:00 - 10:00
    כותרת
    How a key interface between the brain’s neuro-hormonal and vascular systems is assembled
    מיקום
    בניין ארתור ורושל בלפר למחקר ביורפואי
    מרצהProf. Gil Levkowitz
    Weizmann Institute of Science
    מארגן
    המחלקה לגנטיקה מולקולרית
    צרו קשר
    הרצאה
  • Date:24רביעיינואר 2018

    Laser induced homogeneous and oriented ice nucleation probed by ultrafast X-ray pulses

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    שעה
    11:00 - 12:00
    מיקום
    בניין פרלמן למדעי הכימיה
    מרצהDr. Iftach Nevo
    Dept. Materials and Interfaces, WIS
    מארגן
    המחלקה לכימיה מולקולרית ולמדע חומרים
    צרו קשר
    תקצירShow full text abstract about Illumination of supercooled microliter water drops on a hydr...»
    Illumination of supercooled microliter water drops on a hydrophobic glass slide with pulsed ns-laser beams induces ice nucleation. The type of the ice nucleation, heterogeneous or homogeneous is determined by the illumination configuration. When analyzing the enhancement of the X-ray diffraction peaks from frozen drops and the first appearance of diffraction peak from the growing nuclei in a liquid drop by X-ray pulse after each laser pulse, a correlation to the polarization state is seen. This points toward the mechanism where the electric field defines preferred direction for water molecules to bind via the interaction between laser-induced dipoles. Furthermore, the latter observations also reveal particle ice attachment during growth. Finally, different illumination configurations yield freezing temperatures that can be higher by about 10 °C than from non-irradiated water drops.
    הרצאה
  • Date:25חמישיינואר 2018

    Complexity-Theoretic Foundations of Quantum Supremacy Experiments

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    שעה
    11:15 - 12:30
    מיקום
    בניין הפיזיקה ע"ש עדנה וק.ב. וייסמן
    מרצהScott Aaronson
    UT Austin
    מארגן
    הפקולטה לפיזיקה
    צרו קשר
    תקצירShow full text abstract about In the near future, there will likely be special-purpose qua...»
    In the near future, there will likely be special-purpose quantum computers with 50 or so high-quality qubits and controllable nearest-neighbor couplings. In this talk, I'll discuss general theoretical foundations for how to use such devices to demonstrate "quantum supremacy": that is, a clear quantum speedup for *some* task, motivated by the goal of overturning the Extended Church-Turing Thesis (which says that all physical systems can be efficiently simulated by classical computers) as confidently as possible.

    Based on joint work with Lijie Chen, https://arxiv.org/abs/1612.05903

    סימפוזיונים
  • Date:25חמישיינואר 2018

    Optogenetic fMRI and the Investigation of Global Brain Circuit Mechanisms

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    שעה
    14:00 - 14:00
    מיקום
    אולם הרצאות ע"ש גרהרד שמידט
    מרצהJin Hyung Lee, PhD
    Associate Professor of Neurology and Neurological Sciences, Bioengineering, Neurosurgery, and Electrical Engineering (Courtesy) Stanford University
    מארגן
    המחלקה למדעי המוח
    צרו קשר
    תקצירShow full text abstract about Understanding the functional communication across brain has ...»
    Understanding the functional communication across brain has been a long sought-after goal of neuroscientists. However, due to the widespread and highly interconnected nature of brain circuits, the dynamic relationship between neuronal network elements remains elusive. With the development of optogenetic functional magnetic resonance imaging (ofMRI), it is now possible to observe whole-brain level network activity that results from modulating with millisecond- timescale resolution the activity of genetically, spatially, and topologically defined cell populations. ofMRI uniquely enables mapping global patterns of brain activity that result from the selective and precise control of neuronal populations. Advances in the molecular toolbox of optogenetics, as well as improvements in imaging technology, will bring ofMRI closer to its full potential. In particular, the integration of ultra-fast data acquisition, high SNR, and combinatorial optogenetics will enable powerful systems that can modulate and visualize brain activity in real-time. ofMRI is anticipated to play an important role in the dissection and control of network-level brain circuit function and dysfunction. In this talk, the ofMRI technology will be introduced with advanced approaches to bring it to its full potential, ending with examples of dissecting whole brain circuits associated with neurological diseases utilizing ofMRI.

    Short Bio:
    Dr. Lee received her Bachelor’s degree from Seoul National University and Masters and Doctoral degree from Stanford University, all in Electrical Engineering. She is a recipient of the 2008 NIH/NIBIB K99/R00 Pathway to Independence Award, 2010 NIH Director’s New Innovator Award, 2010 Okawa Foundation Research Grant Award, 2011 NSF CAREER Award, 2012 Alfred P. Sloan Research Fellowship, 2012 Epilepsy Therapy Project award, 2013 Alzheimer’s Association New Investigator Award, 2014 IEEE EMBS BRAIN young investigator award, and the 2017 NIH/NIMH BRAIN grant award. As an Electrical Engineer by training with Neuroscience research interest, her goal is to analyze, debug, and engineer the brain circuit through innovative technology.

    1. Hyun Joo Lee†, Andrew Weitz†, David Bernal-Casas, Ben A. Duffy, Mankin Choy, Alexxai Kravitz, Anatol Kreitzer, Jin Hyung Lee*, Activation of direct and indirect pathway medium spiny neurons drives distinct brain-wide responses, Neuron, 2016;91(2):412-424.

    2. Jia Liu†, Ben A. Duffy†, David Bernal-Casas, Zhongnan Fang, Jin Hyung Lee*, Comparison of fMRI analysis methods for heterogeneous BOLD responses in block design studies, Neuroimage, 2017;147:390-408.

    3. David Bernal-Casas, Hyun Joo Lee, Andrew Weitz, Jin Hyung Lee*, Studying brain circuit function with dynamic causal modeling for optogenetic fMRI, Neuron, 2017;93:522-532.
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  • Date:25חמישיינואר 2018

    הקאמרטה הישראלית ירושלים

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    שעה
    20:00 - 20:00
    כותרת
    לאלו, סן סנס והיידן
    מיקום
    אודיטוריום מיכאל סלע
    צרו קשר
    אירועי תרבות
  • Date:27שבתינואר 2018

    אלכסנדר וסילאייב היסטוריון אופנה -

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    שעה
    19:00 - 19:00
    כותרת
    הרצאה ברוסית על קוקו שאנל
    מיקום
    אודיטוריום מיכאל סלע
    צרו קשר
    אירועי תרבות
  • Date:28ראשוןינואר 2018

    A Martian Origin for the Mars Trojan Asteroids

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    שעה
    11:00 - 11:00
    מיקום
    בניין משפחת זוסמן
    מרצהDr. David Polishook
    Department of Earth and Planetary Sciences
    מארגן
    המחלקה למדעי כדור הארץ וכוכבי הלכת
    צרו קשר
    הרצאה
  • Date:28ראשוןינואר 2018

    Personalized Nanomedicines: Principles for using nanotechnology in cancer research

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    שעה
    11:00 - 12:00
    מיקום
    בניין פרלמן למדעי הכימיה
    מרצהProf. Avi Schroeder
    Dept. Chemical Engineering, Technion
    מארגן
    המחלקה לכימיה מולקולרית ולמדע חומרים
    צרו קשר
    תקצירShow full text abstract about Medicine is taking its first steps towards patient-specifi...»

    Medicine is taking its first steps towards patient-specific care. Nanoparticles have many potential benefits for treating cancer, including the ability to transport complex molecular cargoes including siRNA and protein, as well as targeting to specific cell populations.
    The talk will address principles for engineering drug-loaded nanoparticles that can be remotely triggered to release their payload in disease sites. The evolution of such nanoparticles into programmed nano robots, unique particles that have an internal capacity to synthesize protein drugs, and their promise for treating cancer, will be discussed.
    Our research is aimed at tailoring treatments to address each person’s individualized needs and unique disease presentation. Specifically, we developed barcoded nanoparticles that target sites of cancer where they perform a programmed therapeutic task. These systems utilize molecular-machines to improve efficacy and reduce side effects.
    הרצאה
  • Date:28ראשוןינואר 2018

    Molecular Genetics Departmental Seminars 2017-2018

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    שעה
    13:00 - 13:00
    כותרת
    "Metabolic enzyme coupling of Malate Dehydrogenases is enabled by piggybacking to peroxisomes".
    מיקום
    בניין ארתור ורושל בלפר למחקר ביורפואי
    מרצהShiran Maskit
    מארגן
    המחלקה לגנטיקה מולקולרית
    צרו קשר
    הרצאה
  • Date:28ראשוןינואר 2018

    Design and characterization of light-gated proteins for the investigation of medial prefrontal cortex function

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    שעה
    14:30 - 14:30
    מיקום
    אולם הרצאות ע"ש גרהרד שמידט
    מרצהMathias Mahn (PhD Defense Thesis)
    Ofer Yizhar Lab, Dept of Neurobiology, WIS
    מארגן
    המחלקה למדעי המוח
    צרו קשר
    תקצירShow full text abstract about Reversible modulation of neuronal activity is a powerful app...»
    Reversible modulation of neuronal activity is a powerful approach for isolating the roles of specific neuronal populations in circuit dynamics and behavior. Optogenetics enables such experiments, through excitation and inhibition of defined cells within neural circuits. However, in contrast to optogenetic excitation, for which a limited number of optogenetic tools can serve to all but a few experimental needs, tools used for inhibition of neuronal activity still impose stringent constraints on the experimental paradigm. During the seminar I will present data showing that the optimal approach for optogenetic silencing differs between subcellular neuronal compartments, characterize current tools for axonal inhibition and introduce a set of soma-targeted naturally-occurring anion-conducting channelrhodopsins as the potential next generation of inhibitory optogenetic tools for somatodendritic silencing approaches in neuroscience.
    הרצאה
  • Date:29שניינואר 2018

    Ultimate Dark Matter detector

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    שעה
    10:00 - 10:00
    מיקום
    בניין הפיזיקה ע"ש עדנה וק.ב. וייסמן
    מרצהAndrzej K. Drukier
    OKC, University of Stockholm
    מארגן
    המחלקה לפיזיקה של חלקיקים ואסטרופיזיקה
    צרו קשר
    תקצירShow full text abstract about We disclose an implementation of RT-bolometers which compris...»
    We disclose an implementation of RT-bolometers which comprise high chemical-energy materials, e.g. explosive or catalase, H2O2}-system, that can be operated at temperature between 4oC and room temperature (RT). Energy deposited by the incident weakly interacting particle to the nuclei can trigger a local release of chemical energy;. The energy release in such a `nano-explosion’ indicates that a coherent scattering event has taken place and allows for the localization of this event;
    For DM detection {catalase, H2O2}-system is preferred, and there are many catalases, which have maximum activity at temperatures from about 10oC to about 90oC. This permits to optimize enzymatic reactions and influences the read-out design. {catalase, H2O2}-system works because the range of recoiling nuclei is so short that most of the energy is transferred in a single “voxel” called “vertex”, leading to a large local temperature increase.
    When neutrino or WIMPs scatter on nuclei, the majority of the recoil nucleus energy is transferred to the lattice, which leads to the creation of ballistic phonons which rapidly thermalize, i.e. increase the temperature in vertex. For 5 GeV/c2 < MDM < 15 GeV/c2 the energy of the recoiling nuclei is 0.5-2.0 keV and all this energy is deposited within a few nm. Thus, the dE/dx = O(0.1 keV/nm) is deposited in the vertex. The energy deposition is much smaller in the case of single charged, relativistic particles and corresponds to dE/dx < 1 eV/nm for single charged particles. These permits background rejection.
    We developed a very efficient read-out for such detectors. The expected detector cost is low, ca. $50,000 per ton. The deployment will be deep underwater, say at Marina Trench at depth of 11 km. Optionally, such a detector can be used as a “spaghetti detector” and placed in very deep bore-holes down to 20 km water equivalent.
    Similar detectors can be used for Emission Geo-Neutrino Tomography aka Neutrino Geology.
    הרצאה
  • Date:29שניינואר 2018

    Organization of temporal gene expression: from promoter cycles to circadian clocks

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    שעה
    13:30 - 13:30
    מיקום
    בניין ארתור ורושל בלפר למחקר ביורפואי
    מרצהDr. Felix Naef
    The Institute of Bioengineering School of Life Sciences Ecole Polytechnique Federale de Lausanne (EPFL)
    מארגן
    המחלקה לביולוגיה מולקולרית של התא
    צרו קשר
    הרצאה
  • Date:30שלישיינואר 2018

    A special symposium in honor of Prof. Ruhama Even

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    שעה
    08:00 - 08:00
    מיקום
    מרכז כנסים על-שם דויד לופאטי
    יושב ראש
    Ronnie Karsenty
    כנסים
  • Date:30שלישיינואר 2018

    Noncoding RNA in Health and Disease

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    שעה
    10:00 - 11:00
    מיקום
    בניין ארתור ורושל בלפר למחקר ביורפואי
    מרצהProf. Nikolaus Rajewsky
    Scientific Director, Berlin Institute for Medical Systems Biology, Max Delbrück Center, Berlin
    מארגן
    מכון עזריאלי למערכות ביולוגיות
    צרו קשר
    הרצאה
  • Date:30שלישיינואר 2018

    Uncovering the mechanisms underlying individuality

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    שעה
    10:00 - 11:00
    מיקום
    בניין לביוכימיה על שם נלה וליאון בנוזיו
    מרצהDr. Shay Stern
    The Rockefeller University, NY
    מארגן
    המחלקה למדעים ביומולקולריים
    צרו קשר
    תקצירShow full text abstract about Individuals within the same population may show stereotyped ...»
    Individuals within the same population may show stereotyped behaviors, but also unique behaviors that distinguish them from each other, a property called individuality. While individuality in behavior is widespread across species, including humans, the underlying mechanisms that generate individual-to-individual behavioral variation remain largely unknown. In my talk, I will present a newly developed imaging system for studying long-term individuality in C. elegans by monitoring the behavior of multiple individual animals across development, from egg hatching to adulthood, spanning a full generation time. I will show that while C. elegans animals have reproducible patterns of long-term behaviors, individuals within isogenic populations show consistent behavioral biases that persist across development and distinguish them from one another. I will further describe the conserved signaling pathways I uncovered that function to regulate long-term behavior, as well as to increase or decrease the degree of individuality across the population. These studies open a new window for dissecting mechanisms that generate and shape behavioral individuality across developmental timescales.​
    הרצאה

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