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ינואר 01, 2013
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Date:23שלישיינואר 2018הרצאה
Functions and regulation of 3D genome organisation in development and disease
More information שעה 10:00 - 11:00מיקום בניין ארתור ורושל בלפר למחקר ביורפואימרצה Prof. Francois Spitz
(Epi)Genomics of Animal Development Unit Department of Developmental and Stem Cell Biology Institut Pasteur Paris (France)מארגן מכון עזריאלי למערכות ביולוגיותצרו קשר תקציר Show full text abstract about The complex hierarchy of three-dimensional patterns that cha...» The complex hierarchy of three-dimensional patterns that characterize the 3D folding of mammalian chromosomes appears as an important element in controlling gene expression. At the megabase scale, chromosomes are partitioned into domains that define two main compartments, corresponding to transcriptionally active and inactive regions, respectively. Each compartment domain is itself composed of distinct domains characterized by increased self-interactions called topological domains (TADs). Recent high-resolution Hi-C approaches revealed a finer-scale organisation of the genome in smaller “contact domains”, often associated with loops linking specific points. At these different scales, the spatial organisation of the genome shows tight correlation with its chromatin structure and its transcriptional activity. However, while steady progress is being made in describing the 3D folding of the genome at increased resolution, the mechanisms that determine this folding, its dynamic properties and the functional implications of these emerging features are still poorly understood.
We use advanced genome tagging and engineering strategies, as well as targeted inactivation of factors involved in chromosomal folding to unravel the elements and mechanisms that drive the folding of large loci in specific yet dynamic conformations and their influence on gene expression. Our recent results show that the complex patterns of vertebrate HiC maps result from the superimposition of two distinct mechanisms: 1) a cohesin-independent mechanism which brings together regions of similar chromatin states 2) a cohesin-dependent folding that associate different small compartments into TADs. Within TADS, we show as well that enhancers are not acting in a homogeneous manner, but that their influence is distributed in complex patterns, partially guided by the underlying structure. I will discuss the different implications of these findings for our views of genome organisation. -
Date:23שלישיינואר 2018הרצאה
A deep 3D view into cells using cryo-scanning transmission electron tomography
More information שעה 10:00 - 11:00מיקום בניין לביוכימיה על שם נלה וליאון בנוזיומרצה Dr. Shron G. Wolf
Department of Chemical Research Support- WISמארגן המחלקה למדעים ביומולקולרייםצרו קשר תקציר Show full text abstract about CryoSTEM tomography (CSTET) is a novel combination [1-5] of ...» CryoSTEM tomography (CSTET) is a novel combination [1-5] of two well-established techniques: cryo-electron tomography (CET) and scanning transmission electron microscopy (STEM). Cryogenic fixation allows for the most faithful preservation of biological macromolecules, tissues and cells. By preserving the cryogenic temperature and maintaining a contamination-free environment inside the electron microscope, CET for such cryo-preserved specimens have resulted in major advances in their characterization [6]. However, due to technical constraints, sample thickness amenable to viewing by CET is limited (up to ~400 nm).
STEM provides a possibility for relieving these limitations because contrast and signal are produced incoherently. The natural limit for sample thickness is extended three-fold for CSTET, meaning that whole vitrified mammalian cells can be imaged at ~3-4 nm resolution for regions up to ~1 μm in thickness. For spreading cells, many inter- organelle contacts and morphologies can be studied. In addition, CSTET combined with Energy Dispersive X-ray Spectroscopy (EDX) allows for on-the-spot chemical characterization of cell contents.
References
1. Wolf, S.G., L. Houben, and M. Elbaum, Cryo-scanning transmission electron tomography of vitrified cells. Nature Methods, 2014. 11(4): p. 423-428.
2. Wolf, S.G., P. Rez, and M. Elbaum, Phosphorus detection in vitrified bacteria by cryo- STEM annular dark-field analysis. J Microsc, 2015. 260(2): p. 227-33.
3. Elbaum, M., S.G. Wolf, and L. Houben, Cryo-scanning transmission electron tomography of biological cells. MRS Bulletin, 2016. 41(07): p. 542-548.
4. Wolf, S.G., E. Shimoni, M. Elbaum, and L. Houben, STEM Tomography in Biology, in Cellular Imaging, Electron Tomography and Related Techniques, E.G. Hanssen, Editor. 2017, Springer, in press.
5. Wolf, S.G., Y. Mutsafi, T. Dadosh, T. Ilani, Z. Lansky, B. Horowitz, S. Rubin, M. Elbaum, and D. Fass, 3D visualization of mitochondrial solid-phase calcium stores in whole cells. Elife, 2017. 6: e29929.
6. Beck, M. and W. Baumeister, Cryo-Electron Tomography: Can it Reveal the Molecular Sociology of Cells in Atomic Detail? Trends Cell Biol, 2016. 26(11): p. 825-837. -
Date:23שלישיינואר 2018הרצאה
Students Seminar
More information שעה 11:15 - 12:30מיקום בניין וולפסון למחקר ביולוגימרצה Prof. Uri Alon's lab מארגן המחלקה לביולוגיה מולקולרית של התאצרו קשר -
Date:23שלישיינואר 2018הרצאה
Photorespiration is an adaptive response of plants to oxidative stress
More information שעה 11:30 - 11:30מיקום בניין לביוכימיה על שם נלה וליאון בנוזיומרצה Prof. Agepati S. Raghavendra
FNA, FASc, FTWAS, JC Bose National Fellow, School of Life Sciences, Dept. of Plant Sciences, University of Hyderabad, Hyderabad, Indiaמארגן המחלקה למדעי הצמח והסביבהצרו קשר -
Date:23שלישיינואר 2018הרצאה
Pay attention and learn from experience!: The transcriptional representation of experience and the role of the claustrum in attention
More information שעה 12:30 - 12:30מיקום אולם הרצאות ע"ש גרהרד שמידטמרצה Dr. Ami Citri
ELSC, The Hebrew University of Jerusalemמארגן המחלקה למדעי המוחצרו קשר -
Date:24רביעיינואר 2018הרצאה
Developmental Club Series 2017-2018
More information שעה 10:00 - 10:00כותרת How a key interface between the brain’s neuro-hormonal and vascular systems is assembledמיקום בניין ארתור ורושל בלפר למחקר ביורפואימרצה Prof. Gil Levkowitz
Weizmann Institute of Scienceמארגן המחלקה לגנטיקה מולקולריתצרו קשר -
Date:24רביעיינואר 2018הרצאה
Laser induced homogeneous and oriented ice nucleation probed by ultrafast X-ray pulses
More information שעה 11:00 - 12:00מיקום בניין פרלמן למדעי הכימיהמרצה Dr. Iftach Nevo
Dept. Materials and Interfaces, WISמארגן המחלקה לכימיה מולקולרית ולמדע חומריםצרו קשר תקציר Show full text abstract about Illumination of supercooled microliter water drops on a hydr...» Illumination of supercooled microliter water drops on a hydrophobic glass slide with pulsed ns-laser beams induces ice nucleation. The type of the ice nucleation, heterogeneous or homogeneous is determined by the illumination configuration. When analyzing the enhancement of the X-ray diffraction peaks from frozen drops and the first appearance of diffraction peak from the growing nuclei in a liquid drop by X-ray pulse after each laser pulse, a correlation to the polarization state is seen. This points toward the mechanism where the electric field defines preferred direction for water molecules to bind via the interaction between laser-induced dipoles. Furthermore, the latter observations also reveal particle ice attachment during growth. Finally, different illumination configurations yield freezing temperatures that can be higher by about 10 °C than from non-irradiated water drops. -
Date:25חמישיינואר 2018סימפוזיונים
Complexity-Theoretic Foundations of Quantum Supremacy Experiments
More information שעה 11:15 - 12:30מיקום בניין הפיזיקה ע"ש עדנה וק.ב. וייסמןמרצה Scott Aaronson
UT Austinמארגן הפקולטה לפיזיקהצרו קשר תקציר Show full text abstract about In the near future, there will likely be special-purpose qua...» In the near future, there will likely be special-purpose quantum computers with 50 or so high-quality qubits and controllable nearest-neighbor couplings. In this talk, I'll discuss general theoretical foundations for how to use such devices to demonstrate "quantum supremacy": that is, a clear quantum speedup for *some* task, motivated by the goal of overturning the Extended Church-Turing Thesis (which says that all physical systems can be efficiently simulated by classical computers) as confidently as possible.
Based on joint work with Lijie Chen, https://arxiv.org/abs/1612.05903
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Date:25חמישיינואר 2018הרצאה
Optogenetic fMRI and the Investigation of Global Brain Circuit Mechanisms
More information שעה 14:00 - 14:00מיקום אולם הרצאות ע"ש גרהרד שמידטמרצה Jin Hyung Lee, PhD
Associate Professor of Neurology and Neurological Sciences, Bioengineering, Neurosurgery, and Electrical Engineering (Courtesy) Stanford Universityמארגן המחלקה למדעי המוחצרו קשר תקציר Show full text abstract about Understanding the functional communication across brain has ...» Understanding the functional communication across brain has been a long sought-after goal of neuroscientists. However, due to the widespread and highly interconnected nature of brain circuits, the dynamic relationship between neuronal network elements remains elusive. With the development of optogenetic functional magnetic resonance imaging (ofMRI), it is now possible to observe whole-brain level network activity that results from modulating with millisecond- timescale resolution the activity of genetically, spatially, and topologically defined cell populations. ofMRI uniquely enables mapping global patterns of brain activity that result from the selective and precise control of neuronal populations. Advances in the molecular toolbox of optogenetics, as well as improvements in imaging technology, will bring ofMRI closer to its full potential. In particular, the integration of ultra-fast data acquisition, high SNR, and combinatorial optogenetics will enable powerful systems that can modulate and visualize brain activity in real-time. ofMRI is anticipated to play an important role in the dissection and control of network-level brain circuit function and dysfunction. In this talk, the ofMRI technology will be introduced with advanced approaches to bring it to its full potential, ending with examples of dissecting whole brain circuits associated with neurological diseases utilizing ofMRI.
Short Bio:
Dr. Lee received her Bachelor’s degree from Seoul National University and Masters and Doctoral degree from Stanford University, all in Electrical Engineering. She is a recipient of the 2008 NIH/NIBIB K99/R00 Pathway to Independence Award, 2010 NIH Director’s New Innovator Award, 2010 Okawa Foundation Research Grant Award, 2011 NSF CAREER Award, 2012 Alfred P. Sloan Research Fellowship, 2012 Epilepsy Therapy Project award, 2013 Alzheimer’s Association New Investigator Award, 2014 IEEE EMBS BRAIN young investigator award, and the 2017 NIH/NIMH BRAIN grant award. As an Electrical Engineer by training with Neuroscience research interest, her goal is to analyze, debug, and engineer the brain circuit through innovative technology.
1. Hyun Joo Lee†, Andrew Weitz†, David Bernal-Casas, Ben A. Duffy, Mankin Choy, Alexxai Kravitz, Anatol Kreitzer, Jin Hyung Lee*, Activation of direct and indirect pathway medium spiny neurons drives distinct brain-wide responses, Neuron, 2016;91(2):412-424.
2. Jia Liu†, Ben A. Duffy†, David Bernal-Casas, Zhongnan Fang, Jin Hyung Lee*, Comparison of fMRI analysis methods for heterogeneous BOLD responses in block design studies, Neuroimage, 2017;147:390-408.
3. David Bernal-Casas, Hyun Joo Lee, Andrew Weitz, Jin Hyung Lee*, Studying brain circuit function with dynamic causal modeling for optogenetic fMRI, Neuron, 2017;93:522-532.
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Date:25חמישיינואר 2018אירועי תרבות
הקאמרטה הישראלית ירושלים
More information שעה 20:00 - 20:00כותרת לאלו, סן סנס והיידןמיקום אודיטוריום מיכאל סלעצרו קשר -
Date:27שבתינואר 2018אירועי תרבות
אלכסנדר וסילאייב היסטוריון אופנה -
More information שעה 19:00 - 19:00כותרת הרצאה ברוסית על קוקו שאנלמיקום אודיטוריום מיכאל סלעצרו קשר -
Date:28ראשוןינואר 2018הרצאה
A Martian Origin for the Mars Trojan Asteroids
More information שעה 11:00 - 11:00מיקום בניין משפחת זוסמןמרצה Dr. David Polishook
Department of Earth and Planetary Sciencesמארגן המחלקה למדעי כדור הארץ וכוכבי הלכתצרו קשר -
Date:28ראשוןינואר 2018הרצאה
Personalized Nanomedicines: Principles for using nanotechnology in cancer research
More information שעה 11:00 - 12:00מיקום בניין פרלמן למדעי הכימיהמרצה Prof. Avi Schroeder
Dept. Chemical Engineering, Technionמארגן המחלקה לכימיה מולקולרית ולמדע חומריםצרו קשר תקציר Show full text abstract about Medicine is taking its first steps towards patient-specifi...»
Medicine is taking its first steps towards patient-specific care. Nanoparticles have many potential benefits for treating cancer, including the ability to transport complex molecular cargoes including siRNA and protein, as well as targeting to specific cell populations.
The talk will address principles for engineering drug-loaded nanoparticles that can be remotely triggered to release their payload in disease sites. The evolution of such nanoparticles into programmed nano robots, unique particles that have an internal capacity to synthesize protein drugs, and their promise for treating cancer, will be discussed.
Our research is aimed at tailoring treatments to address each person’s individualized needs and unique disease presentation. Specifically, we developed barcoded nanoparticles that target sites of cancer where they perform a programmed therapeutic task. These systems utilize molecular-machines to improve efficacy and reduce side effects.
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Date:28ראשוןינואר 2018הרצאה
Molecular Genetics Departmental Seminars 2017-2018
More information שעה 13:00 - 13:00כותרת "Metabolic enzyme coupling of Malate Dehydrogenases is enabled by piggybacking to peroxisomes".מיקום בניין ארתור ורושל בלפר למחקר ביורפואימרצה Shiran Maskit מארגן המחלקה לגנטיקה מולקולריתצרו קשר -
Date:28ראשוןינואר 2018הרצאה
Design and characterization of light-gated proteins for the investigation of medial prefrontal cortex function
More information שעה 14:30 - 14:30מיקום אולם הרצאות ע"ש גרהרד שמידטמרצה Mathias Mahn (PhD Defense Thesis)
Ofer Yizhar Lab, Dept of Neurobiology, WISמארגן המחלקה למדעי המוחצרו קשר תקציר Show full text abstract about Reversible modulation of neuronal activity is a powerful app...» Reversible modulation of neuronal activity is a powerful approach for isolating the roles of specific neuronal populations in circuit dynamics and behavior. Optogenetics enables such experiments, through excitation and inhibition of defined cells within neural circuits. However, in contrast to optogenetic excitation, for which a limited number of optogenetic tools can serve to all but a few experimental needs, tools used for inhibition of neuronal activity still impose stringent constraints on the experimental paradigm. During the seminar I will present data showing that the optimal approach for optogenetic silencing differs between subcellular neuronal compartments, characterize current tools for axonal inhibition and introduce a set of soma-targeted naturally-occurring anion-conducting channelrhodopsins as the potential next generation of inhibitory optogenetic tools for somatodendritic silencing approaches in neuroscience. -
Date:29שניינואר 2018הרצאה
Ultimate Dark Matter detector
More information שעה 10:00 - 10:00מיקום בניין הפיזיקה ע"ש עדנה וק.ב. וייסמןמרצה Andrzej K. Drukier
OKC, University of Stockholmמארגן המחלקה לפיזיקה של חלקיקים ואסטרופיזיקהצרו קשר תקציר Show full text abstract about We disclose an implementation of RT-bolometers which compris...» We disclose an implementation of RT-bolometers which comprise high chemical-energy materials, e.g. explosive or catalase, H2O2}-system, that can be operated at temperature between 4oC and room temperature (RT). Energy deposited by the incident weakly interacting particle to the nuclei can trigger a local release of chemical energy;. The energy release in such a `nano-explosion’ indicates that a coherent scattering event has taken place and allows for the localization of this event;
For DM detection {catalase, H2O2}-system is preferred, and there are many catalases, which have maximum activity at temperatures from about 10oC to about 90oC. This permits to optimize enzymatic reactions and influences the read-out design. {catalase, H2O2}-system works because the range of recoiling nuclei is so short that most of the energy is transferred in a single “voxel” called “vertex”, leading to a large local temperature increase.
When neutrino or WIMPs scatter on nuclei, the majority of the recoil nucleus energy is transferred to the lattice, which leads to the creation of ballistic phonons which rapidly thermalize, i.e. increase the temperature in vertex. For 5 GeV/c2 < MDM < 15 GeV/c2 the energy of the recoiling nuclei is 0.5-2.0 keV and all this energy is deposited within a few nm. Thus, the dE/dx = O(0.1 keV/nm) is deposited in the vertex. The energy deposition is much smaller in the case of single charged, relativistic particles and corresponds to dE/dx < 1 eV/nm for single charged particles. These permits background rejection.
We developed a very efficient read-out for such detectors. The expected detector cost is low, ca. $50,000 per ton. The deployment will be deep underwater, say at Marina Trench at depth of 11 km. Optionally, such a detector can be used as a “spaghetti detector” and placed in very deep bore-holes down to 20 km water equivalent.
Similar detectors can be used for Emission Geo-Neutrino Tomography aka Neutrino Geology. -
Date:29שניינואר 2018הרצאה
Organization of temporal gene expression: from promoter cycles to circadian clocks
More information שעה 13:30 - 13:30מיקום בניין ארתור ורושל בלפר למחקר ביורפואימרצה Dr. Felix Naef
The Institute of Bioengineering School of Life Sciences Ecole Polytechnique Federale de Lausanne (EPFL)מארגן המחלקה לביולוגיה מולקולרית של התאצרו קשר -
Date:30שלישיינואר 2018כנסים
A special symposium in honor of Prof. Ruhama Even
More information שעה 08:00 - 08:00מיקום מרכז כנסים על-שם דויד לופאטייושב ראש Ronnie Karsenty -
Date:30שלישיינואר 2018הרצאה
Noncoding RNA in Health and Disease
More information שעה 10:00 - 11:00מיקום בניין ארתור ורושל בלפר למחקר ביורפואימרצה Prof. Nikolaus Rajewsky
Scientific Director, Berlin Institute for Medical Systems Biology, Max Delbrück Center, Berlinמארגן מכון עזריאלי למערכות ביולוגיותצרו קשר -
Date:30שלישיינואר 2018הרצאה
Uncovering the mechanisms underlying individuality
More information שעה 10:00 - 11:00מיקום בניין לביוכימיה על שם נלה וליאון בנוזיומרצה Dr. Shay Stern
The Rockefeller University, NYמארגן המחלקה למדעים ביומולקולרייםצרו קשר תקציר Show full text abstract about Individuals within the same population may show stereotyped ...» Individuals within the same population may show stereotyped behaviors, but also unique behaviors that distinguish them from each other, a property called individuality. While individuality in behavior is widespread across species, including humans, the underlying mechanisms that generate individual-to-individual behavioral variation remain largely unknown. In my talk, I will present a newly developed imaging system for studying long-term individuality in C. elegans by monitoring the behavior of multiple individual animals across development, from egg hatching to adulthood, spanning a full generation time. I will show that while C. elegans animals have reproducible patterns of long-term behaviors, individuals within isogenic populations show consistent behavioral biases that persist across development and distinguish them from one another. I will further describe the conserved signaling pathways I uncovered that function to regulate long-term behavior, as well as to increase or decrease the degree of individuality across the population. These studies open a new window for dissecting mechanisms that generate and shape behavioral individuality across developmental timescales.
