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ינואר 12, 2015
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Date:27שנימאי 2024הרצאה
Towards quantitative biology of developmental abnormalities
More information שעה 13:00 - 14:00מיקום בניין ארתור ורושל בלפר למחקר ביורפואימרצה Prof. Stanislav Shvartsman
Dept of Molecular Biology Princeton Universityצרו קשר תקציר Show full text abstract about Developmental disorders are severely understudied, in spite ...» Developmental disorders are severely understudied, in spite of their alarmingly high incidence, with 1 in 6 U.S. children having one or more disabilities or developmental delays. The main challenge is the design of statistically powered studies that can disentangle numerous genetic and environmental factors. We have been working towards addressing this challenge for the developmental abnormalities associated with the germline mutations within the ERK cascade. Focusing on mutations that affect MEK, a kinase that activates ERK, we demonstrated how studies of human mutations in Drosophila can answer the long-standing questions in the field. Specifically, we established how pathogenic mutations affect an isolated MEK protein, demonstrated how they disrupt the normal process of MEK activation in the cell, and quantified their effects on ERK signaling in embryos. More recently, our work shed light on the origins of phenotypic variability in the ERK-associated developmental disorders, demonstrating that they can be of purely stochastic origin. Given the generality of our approach, it should be applicable to other developmental abnormalities associated with genetically deregulated cell signaling. -
Date:28שלישימאי 2024הרצאה
Specificity and promiscuity of JAK recruitment regulates pleiotropy of cytokine-receptor signaling
More information שעה 09:15 - 10:15מיקום בניין לביוכימיה על שם נלה וליאון בנוזיומארגן המחלקה למדעים ביומולקולרייםצרו קשר תקציר Show full text abstract about Promiscuous binding of Janus kinases (JAKs) to class I/II cy...» Promiscuous binding of Janus kinases (JAKs) to class I/II cytokine receptors has been
reported, yet its role in signaling is unclear. To systematically explore JAK pairing in type
I interferon (IFN-I) signaling, we generated an artificial IFN-I receptor (AIR) by replacing
the extracellular domains of IFNAR1 and IFNAR2 with anti-mEGFP and mCherry
nanobodies. The heterodimeric AIR restored near-native IFN-I activity, while the
homomeric variant of IFNAR2 (AIR-dR2) initiated much weaker signaling despite
harboring docking sites for STAT proteins. To further investigate the roles of JAKs on the
receptors, knockout (KO) JAK1, JAK2, TYK2, and JAK2/TYK2 were generated. JAK1
KO led to a complete loss of IFN-I signaling, partially restored by TYK2 overexpression.
TYK2 KO cells retained partial activity, which was elevated by JAK1 overexpression,
suggesting both JAKs partially substitute each other.
Conversely, JAK2 KO only moderately impacted the biological activity of IFN-Is, even in
JAK2/TYK2 KO cells. Live cell micropatterning confirmed promiscuous binding of JAK1,
JAK2, and TYK2 to IFNAR1 and IFNAR2. Moreover, the identities of recruitment of
different JAKs on the ICDs were related to their respective concentrations in the cell, which
varies between cell lines. Yet, the efficiency of JAK cross-phosphorylation and
downstream signaling also depend on their identity. Promiscuity of JAK binding was also
observed for IFNL1, IL-10-Rbβ, TPOR, and GHR but not for EPOR, accompanied by
different downstream signaling activities. The competitive binding of JAKs to cytokine
receptors and the highly diverse absolute and relative JAK expression levels in different
cell types can account for cell type-dependent signaling pleiotropy observed for cytokine
receptors.
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Date:28שלישימאי 2024הרצאה
Vasosdynamics of cortical arterioles and what it informs us about neuronal activity
More information שעה 12:30 - 13:15מיקום אולם הרצאות ע"ש גרהרד שמידטמארגן המחלקה למדעי המוחצרו קשר -
Date:28שלישימאי 2024הרצאה
Student Seminar
More information שעה 12:30 - 13:30מיקום בניין ע"ש מקס ולילאן קנדיוטימארגן המחלקה לאימונולוגיה ורגנרציה ביולוגיתצרו קשר -
Date:28שלישימאי 2024הרצאה
How to Enhance Sex Determination?
More information שעה 14:00 - 15:00מיקום אולם הרצאות ע"ש גרהרד שמידטמרצה Dr. Nitzan Gonen
The Mina and Everard Goodman Faculty of Life Sciences Institute of Nanotechnology and Advanced Materials, Bar-Ilan Universityמארגן המחלקה לביולוגיה מבנית וכימיתצרו קשר -
Date:29רביעימאי 2024הרצאה
Phd Defense Seminar- Hagar Fox
More information שעה 09:30 - 09:30כותרת Unravelling key genes involved in carbohydrate regulation and dynamics in trees, and the link to tree performance under drought stressמיקום בניין לביוכימיה על שם נלה וליאון בנוזיומארגן המחלקה למדעי הצמח והסביבהצרו קשר -
Date:29רביעימאי 2024הרצאה
Machine Learning and Statistics Seminar
More information שעה 11:15 - 12:15כותרת First-Order Methods for Sparse Optimizationמיקום בניין יעקב זיסקינדמרצה Nadav Hallak
Technionמארגן המחלקה למדעי המחשב ומתמטיקה שימושיתצרו קשר תקציר Show full text abstract about Sparse solutions play a crucial role in various fields due t...» Sparse solutions play a crucial role in various fields due to their compact representation, interpretability, robustness, and better generalization. This talk focuses on first-order methods for composite problems with an explicit sparsity expression, and the connection between the optimality conditions they achieve. I will show that the proximal-gradient operation can be implemented efficiently for classes of composite problems in spite of the sparsity element, and will present component-wise methods that achieve better solutions compared to the proximal-gradient. Finally, a conditional gradient based method that balances between the advantages and disadvantages of the proximal-gradient and the component-wise methods will be presented.
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Date:29רביעימאי 2024הרצאה
Measuring conformational equilibria in allosteric proteins with time-resolved tmFRET
More information שעה 14:00 - 15:00מיקום אולם הרצאות ע"ש גרהרד שמידטמרצה Prof. Sharona Gordon
Professor of Physiology & Biophysics, University of Washington School of Medicineמארגן המחלקה לביולוגיה מבנית וכימיתצרו קשר -
Date:30חמישימאי 2024הרצאה
Vision and AI
More information שעה 12:15 - 13:15כותרת Editing methods for Text-to-Image Modelsמיקום בניין יעקב זיסקינדמרצה Hadas Orgad
Technionמארגן המחלקה למדעי המחשב ומתמטיקה שימושיתצרו קשר תקציר Show full text abstract about Text-to-image generative diffusion models are trained on hug...» Text-to-image generative diffusion models are trained on huge amounts of web-scraped image-caption pairs. As a result, these models encode real-world information and correlations, such as the identity of the President of the United States, or the color of the sky. While this knowledge can be useful, and allows easy and efficient generation of beautiful images from simple prompts, it may also be outdated, reflect assumptions and biases (e.g., doctors are always white male), or violate copyrights (as was demonstrated in recent lawsuits for models imitating artistic styles). However, model providers and creators currently have no efficient means to update models without either retraining them---which is costly in computation and time, and might also require data curation---or requiring explicit prompt engineering from the end user. In this talk, we will discuss three of our recent papers, which aim to offer a fast and practical way to control model behavior post-training. We modify a small, targeted part of the model that is responsible for encoding a certain part in the computation process of the deep network. This is done without training, by editing the model weights using a closed-form solution. The different papers target different parts of the model, as well as various types of information encoded in it: implicit assumptions, factual associations, artistic style, social biases, and harmful content. We will also discuss some of the interpretability aspects and insights that can be gained from these editing methods. Overall, the methods presented in the talk offer a fast and practical means for safe deployment of text-to-image models.
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Date:02ראשוןיוני 2024הרצאה
Preparing to chew and digest: development and renewal in the mouth and gut
More information שעה 10:00 - 11:00מיקום בניין ארתור ורושל בלפר למחקר ביורפואימרצה Prof. Ophir Klein
Executive Director, Cedars-Sinai Guerin Children's Director, Program in Craniofacial Biology University of California, San Franciscoצרו קשר -
Date:02ראשוןיוני 2024הרצאה
The Role of Cloud Morphology in Aerosol-Cloud Interactions
More information שעה 11:00 - 11:00מיקום בניין משפחת זוסמןמרצה Tom Goren
Bar Ilan Universityמארגן המחלקה למדעי כדור הארץ וכוכבי הלכתצרו קשר תקציר Show full text abstract about Aerosol-cloud interactions are extensively studied to unders...» Aerosol-cloud interactions are extensively studied to understand the climatic effect of anthropogenic aerosols, as the latter can change the radiative properties of clouds. Despite the clear presence of different cloud morphologies (i.e., the spatial variation of cloud thickness), the impact of aerosol-cloud interactions under different cloud morphologies is often overlooked. I will show that accounting for cloud morphology is essential for a better process understanding and for an accurate assessment of the radiative forcing due to aerosol-cloud interactions.
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Date:03שנייוני 2024סימפוזיונים
Arrays of noisy, coupled circadian clocks in a multicellular cyanobacterial organism; experiment and stochastic model
More information שעה 11:00 - 12:15מיקום אולם הרצאות ע"ש גרהרד שמידטמרצה Prof. Joel Stavans
Department of Physics of Complex Systems Faculty of Physics, WISמארגן המחלקה לפיזיקה כימית וביולוגיתדף בית צרו קשר תקציר Show full text abstract about Circadian clocks in unicellular phototrophic organisms are k...» Circadian clocks in unicellular phototrophic organisms are known to display remarkable reliability. In contrast, not much is known about how circadian clocks perform in a multicellular setting. Are clocks in multicellular cyanobacteria coupled and synchronized with one another? Are clocks entrained only by external cues? What is the spatial extent of synchronization? What is the role of cell-cell variations in copy numbers of molecules comprising the core clock (demographic noise) in setting the temporal pattern and its robustness? To tackle quantitatively these and other questions, we studied the dynamics of a circadian clock-controlled gene in Anabaena sp. PCC 7120, a multicellular cyanobacterium in which cells are arranged one after the other and coupled by protein channels, in a one-dimensional structure. Our real-time, single-cell level measurements showed significant synchronization and spatial coherence along filaments, and clock coupling mediated by cell-cell communication. Furthermore, we found significant variability in expression between different cells along filaments. A stochastic one-dimensional toy model of coupled clocks and their phosphorylation states shows that demographic noise can seed stochastic oscillations outside the region where deterministic limit cycles with circadian periods occur. The model reproduces the observed spatio-temporal coherence along filaments and provides a robust description of coupled circadian clocks in a multicellular organism, despite significant stochasticity in biomolecular reactions. Lastly, we carried out experiments in which developmental processes were induced. Our experiments showed that gene expression in different vegetative intervals along a developed filament was discoordinated, and that differentiation took place preferentially within a limited interval of the circadian clock cycle. The transition to multicellularity demanded coordination between clocks via cell-cell communication, to optimize fitness in the presence of significant demographic noise. -
Date:03שנייוני 2024הרצאה
Midrasha on Groups Seminar
More information שעה 11:15 - 13:00כותרת Cubical fixed-points and random groupsמיקום בניין יעקב זיסקינדמרצה Zachary Munro
Technionמארגן המחלקה למתמטיקהצרו קשר תקציר Show full text abstract about A group is cubulated if it acts freely and cocompactly on a ...» A group is cubulated if it acts freely and cocompactly on a CAT(0) cube complex, a high-dimensional generalization of a tree. Cubulating hyperbolic groups has proven to be a fruitful endeavor over the past couple decades, as cubulation implies strong subgroup separability and linearity properties. Generalizing property FA, we consider the n-dimensional cubical fixed point property. A group has property FW_n if every action on an n-dimensional CAT(0) cube complex has a global fixed-point. We will show how to produce many examples of FW_n groups and prove that random groups have FW_n for every n.
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Date:03שנייוני 2024הרצאה
Midrasha on Groups Seminar
More information שעה 11:15 - 13:00כותרת Cubical fixed-points and random groupsמיקום בניין יעקב זיסקינדמרצה Zachary Munro
Technionמארגן המחלקה למתמטיקהצרו קשר תקציר Show full text abstract about A group is cubulated if it acts freely and cocompactly on a ...» A group is cubulated if it acts freely and cocompactly on a CAT(0) cube complex, a high-dimensional generalization of a tree. Cubulating hyperbolic groups has proven to be a fruitful endeavor over the past couple decades, as cubulation implies strong subgroup separability and linearity properties. Generalizing property FA, we consider the n-dimensional cubical fixed point property. A group has property FW_n if every action on an n-dimensional CAT(0) cube complex has a global fixed-point. We will show how to produce many examples of FW_n groups and prove that random groups have FW_n for every n.
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Date:03שנייוני 2024הרצאה
Midrasha on Groups Seminar
More information שעה 14:15 - 16:00כותרת mod 2 cohomology, random simplicial complexes, property testing, and coboundry expansionמיקום בניין יעקב זיסקינדמרצה Alex Lubotzky
Weizmannמארגן המחלקה למתמטיקהצרו קשר תקציר Show full text abstract about We will start with an elementary introduction to mod 2 cohom...» We will start with an elementary introduction to mod 2 cohomology (only basic linear algebra is needed). We will then see how it relates to the other topics in the title. If time permits, we will also say something about quantum error correcting codes.
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Date:04שלישייוני 2024הרצאה
Or Amar’s Thesis Defense
More information שעה 09:30 - 09:30כותרת Discovery of enzymes for degrading anthropogenic materials using knowledge graph embeddingמיקום Benoziyo Room 290מארגן המחלקה למדעי הצמח והסביבהצרו קשר -
Date:04שלישייוני 2024הרצאה
Lineage tracing in the pancreas reveal the pancreatic ductal adenocarcinoma cell of origin
More information שעה 10:00 - 11:00מיקום בניין לביוכימיה על שם נלה וליאון בנוזיומרצה Dr. Gabriela Koifman
Department of Biomolecular Sciencesמארגן המחלקה למדעים ביומולקולרייםצרו קשר תקציר Show full text abstract about Pancreatic ductal adenocarcinoma (PDAC) is one of the deadli...» Pancreatic ductal adenocarcinoma (PDAC) is one of the deadliest cancers with a five-year survival rate of ˜12.5% and is the fourth leading cause of cancer-related death in the western world, estimated to become the second leading cause of cancer related death by the year 2030. PDAC is characterized by a high metastatic burden leading to poor patient outcome. This capability to induce metastatic growth has been ascribed to specific sub-clones within tumours. Intra tumour heterogeneity in PDAC is also exemplified by the coexistence of a tumour hierarchy consisting of phenotypically different sub-populations that harbour unique proliferative, tumourigenic and chemoresistant capacities. Understanding PDAC hierarchies might be a crucial step to identify the cells of origin of PDAC, which will provide an important avenue that will allow deeper understanding of the disease and the development of more effective treatments for PDA patients. Given the ductal morphology of PDAC, ductal cells have for long been the main candidates as tumour initiating cells. However, more recent studies seemed to suggest that PDAC originate from non-ductal, endocrine or acinar cells, transdifferentiating into a ductal-like morphology. Recently, by utilizing commonly used genetic mouse model, we were able to identify a subpopulation of cells within the acinar cell population that is responsible for tumour initiation and serves as the cell of origin of PDAC in this mouse model. we have identified the gene signature of PDAC acinar cell of origin that consist of proliferation and stem cell associated gene signatures. This characterization might lead to the identification of early disease biomarkers and new therapeutic approaches to target the disease and improve the outcome PDAC patients. -
Date:04שלישייוני 2024הרצאה
Blood flow perturbations and its impact on brain structure and function: from microstrokes to heartbeats
More information שעה 12:30 - 13:30מיקום אולם הרצאות ע"ש גרהרד שמידטמרצה Prof. Pablo Blinder
Dept of Neurobiology, Tel Aviv Universityמארגן המחלקה למדעי המוחצרו קשר -
Date:04שלישייוני 2024הרצאה
The Clore Center for Biological Physics
More information שעה 13:15 - 14:30כותרת Flexoelectricity versus Electrostatics in Polar Nematic Liquid Crystalsמיקום ספרית הפיסיקה על שם נלה וליאון בנוזיומרצה Prof. Jonathan Selinger
Kent State Universityמארגן מרכז לפיזיקה ביולוגית עש קלורצרו קשר תקציר Show full text abstract about In the most common phase of liquid crystals, called the ne...»
In the most common phase of liquid crystals, called the nematic phase, molecules are aligned up or down along some axis, so that the net electrostatic polarization is zero. Recent experiments have found a new class of liquid crystals, called ferroelectric nematic, in which molecules align predominantly in one direction along the axis, leading to a nonzero polarization. From the perspective of statistical mechanics, the ferroelectric nematic phase has two special features. First, it has flexoelectricity, meaning that the polarization induces a splay of the molecular orientation. Second, the energy includes an electrostatic interaction, which favors a domain structure. In this talk, we discuss the competition between those two effects to control the phase behavior.
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Date:04שלישייוני 2024הרצאה
Synthetic Biology Platforms to Study Biological Systems and for Biomedical Applications
More information שעה 14:00 - 15:00מיקום אולם הרצאות ע"ש גרהרד שמידטמרצה Dr. Lior Nissim
The Faculty of Medicine Hebrew Universityמארגן המחלקה לביולוגיה מבנית וכימיתצרו קשר
