The Department of Particle Physics and Astrophysics is engaged in both experimental and theoretical research, in various directions. These include elementary particle physics, field theory, string theory, theoretical astrophysics, observational astrophysics, particle astrophysics, relativistic heavy ion physics, molecular physics, nuclear physics, plasma physics, and radiation detection physics.
The areas of research in the Department of Organic Chemistry include synthetic and mechanistic organic and organometallic chemistry, novel reactions for organic synthesis, bond activation by metal complexes, polymeric reagents and catalysis. Bioorganic chemistry includes the studies of plant antiviral agents, the molecular mechanism of action of rhodopsin, artificial ion carriers and molecular sensors. Biological chemistry includes studies on structure,function, and mode of action of biologically active peptides and proteins; thermophilic enzymes; enzymes involved in DNA repair, DNA and RNA processing; studies of ordered, compact states of nucleic acids; and biomedical applications of EPR and NMR. Computational chemistry deals with the prediction of molecular properties by first principles (ab initio) and semiempirical quantum mechanical calculations.
Research in Neuroscience in the Department of Neurobiology encompasses a wide variety of subjects, in areas including cellular and molecular biology, neuroanatomy, functional magnetic resonance imaging (fMRI), physiology, pharmacology, psychophysics, and computational sciences.
Basically, the research of the various groups of the Department covers, among others, the following topics:
At the Neurobiology Department, the structure, function, development, and plasticity of the nervous system are studied at various levels of analysis, using different types of cell and experimental animal models. The groups studying neuronal function at the molecular and cellular levels use in vitro systems ranging from non-neuronal and neuronal cell lines to primary neuronal and glial cells of cerebellar, hippocampal and cortical origin. In many cases, the cells studied are transfected with genes of interest. These cell systems allow the study of the roles of various components of the nervous system, including cell surface membrane components, specific enzymes, neurotransmitters, neuromodulators, growth factors, neuroreceptors, lipid components, ionic channels and cytoskeletal constituents. Algorithms for the synaptic plasticity between neurons, and the role of dendritic ion channels in synaptic input and information processing, are also being studied. Injury models of nerve lesion and oxidative stress paradigms are applied to examine the principles of CNS regeneration, rescue from ischemia and stroke, and apoptotic cell death and senescence.
The groups studying the CNS at the system level are striving to understand the complex neuronal mechanisms underlying learning, memory, and sensory processing (vision, taste, smell), and to determine the relationship between brain and mind. Using track tracing methods, the rules governing the interconnections in the visual cortex are being unraveled. Behavioral studies focus on principles of learning and consolidation, cortical information processing, learning disabilities, and addiction. Functional brain imaging of the human visual cortex is being studied by various techniques, including fMRI. Psychophysical approaches are being used to define processes involved in image segmentation, learning and memory skill acquisition, motor control, and language. Nearly 20 groups of researchers carry out both independent studies and collaborative research with colleagues from within the Department and outside it.
The molecular basis of genetics and related biological processes are under investigation in our Department. The investigators approach these processes from the most reduced and reconstructed systems up to more systemic and computational analysis. Different organisms are employed including virus, yeast, Drosophila, mouse and human. These animal models and cell culture systems are used to study the mechanisms of;
a. Basic processes in gene expression, such as transcription, translation and protein degradation.
b. Cellular responses to various stimuli, such as cytokines, growth factors and exposure to DNA-damage.
c. Regulation of cell growth, senescence, differentiation and death.
d. Development; Mechanistic view of zygote to embryo transition and development of various organs, such as brain, muscles, bones and pancreas.
e. Genetic and acquired diseases such as cancer and virus infection. Embryonic stem cell biology, early development and advance human disease modeling.
f. Study of pluripotent stem cell biology and epigenetic reprogramming.
g. Computational and system biology. The function/evolution of genes and their diversification.
The molecular mechanisms underlying cell structures, dynamics and fate, and their involvement in embryonic development and cancer are among the primary topics of interest of the Department. These include studies on the mode of action of growth factors and the nature of signals triggered by them in target cells following binding to specific surface receptors. Growth regulation is also approached through the study of suppressor genes encoding such proteins as p53, which inhibit proliferation and drive cells towards differentiation or apoptosis. These studies, focusing on the mechanisms stimulate cell proliferation, differentiation, or death, can elucidate the basis for cancerous transformation in a large variety of systems. Overproduction or hyperactivation of growth-promoting systems was shown to have an oncogenic (cancer-causing) effect, and a similar process may be induced when growth-suppressor or apoptosis-inducing genes fail to function. The levels at which cell structure, activity and fate are studied in this department and the focus of these studies are many and diverse, including the characterization of soluble growth factors and their receptors, the nature of complex signal transduction pathways, the action of specific regulators of cytokine action, rearrangement of genes associated with oncogenic processes, and the properties of tumor suppressor and apoptosis promoting genes. Since such processes involve networks of interacting factors, we are also interested in mathematical modeling and computerized analysis of biological gene circuits.
In addition, there is broad interest in the molecular mechanisms of cell adhesion and their involvement in the regulation of cell fate. These studies include characterization of the basic rules underlying adhesive interactions, the binding of surface-associated adhesion molecules with the cytoskeleton, and the nature of growth- and differentiation-promoting signals triggered by adhesive interactions. Of special interest are proteins such as β-catenin, which play a crucial role in reinforcing cell-cell adhesions as well as triggering gene expression.
The principal research interests of the department lie in the broadly understood areas of analysis, probability, algebra, and geometry.
Topics covered in Analysis include operator and matrix theory, spectral theory, linear and nonlinear ordinary and partial differential equations, functional and harmonic analysis, ergodic theory and dynamical systems, control theory in its various manifestations, optimization, game theory, approximation and complexity of functions, numerical analysis, singularity theory and robotics.
Research in Probability theory covers random walks and graphs, motion in random media, percolation, random matrices, Gaussian fields and other probabilistic models in mathematical physics.
Areas of Geometric research include the structure of finite and infinite dimensional spaces, analytic, real algebraic and semi-algebraic geometry, typology of foliations and complex vector fields.
The Algebraic direction includes some aspects of algebraic geometry, geometric group theory, Lie Theory, representation theory, quantum groups, number theory, automorphic forms, ring theory, statistics of Young diagrams, algebraic combinatorics and enveloping algebras, invariants and crystals.
For the research done at our sister department, the Department of Scomputer Science and Applied Mathematics, see here.
Activities in the Department span a wide range of topics from soft, composite and hard materials to energy research, nanoscience, and biological systems. A UNIFYING THEME is the STUDY OF MATERIAL FUNCTIONALITY AND ITS RELATION TO FUNDAMENTAL PROPERTIES AT MULTIPLE SCALES. These properties may be mechanical, structural, electronic, magnetic and chemical. Some examples are:
How do shapes and sizes of nm-sized particles affect their spectral properties?
How can we tune the properties of solar cells by manipulating their material interfaces?
How does friction in knee and hip joints depend on polyelectrolytes that lubricate them? How can we design self-assembling, even self-replicating (bio)chemical systems?
THE RESEARCH IS BASED ON AN INTERDISCIPLINARY APPROACH, and indeed the scientists bring complementary experience in chemistry, physics, and biophysics, including theory and experiment.
Research topics of our Department span the wide range from basic mechanisms in the development, recognition, inter-cellular communication, trafficking, and effector functions of the immune system to the role of these processes in autoimmune disorders, allergies and cancer. Special attention is given to the studies of immunomodulation and immunotherapy of these diseases leading to the development of specific vaccines to viruses, parasites, cancer and autoimmune diseases. Specific projects include production of specific antibodies for targeting of drugs and effector lymphocytes; raising of catalytic antibodies; studies of the repertoire and specificity of the T-cell receptor in autoimmune models for multiple sclerosis, diabetes, arthritis, and myasthenia gravis; definition of antigen recognition and mode of action of killer lymphocytes in allograft and tumor rejection; understanding the developmental process of leukemias and treating them; use of cytokines for immunotherapy of metastases and immunomodulation of lymphocyte migration; immune cell adhesion and migration; the control of inflammatory processes; development of hematopoietic stem cells and T-cells activity during aging as well as understanding antigen recognition mechanisms by their receptors and its coupling to cellular response in mast cells as a model.
This Department, established in 1990, is dedicated to understanding the complex inter-relationships among the major Earth Systems, and between the human need for energy and the consequent impact on the Earth's environment. This requires knowledge of the interdependent components that together constitute the "environment", as well as a commitment to protect this environment by improving the manner in which water, land and energy are utilized by humans.
The Department's research activities have several general areas of activities. One focuses on water and includes hydrology, geochemistry, land-plant-atmosphere interactions and oceanography. A second activity is in the use of stable isotopes for reconstructions of paleoclimatic and of biosphere-atmosphere dynamics, and a third is in the area of atmospheric chemistry and dynamics, and cloud physics. A fourth area of research is in planetary sciences. Research in solar energy is conducted in a dedicated facility, the Solar Tower, on campus. The Department is distinguished by the interactions among scientists from different backgrounds and expertise, which is critical to achieve a comprehensive understanding of the global environment. We also promote international collaboration based on short- and long-term visits for research and training by scientists who complement existing activities in the Department. The interdisciplinary nature of the Department is well reflected in the academic training of the research students. Their backgrounds vary enormously from physics and mathematics through geology to biology. We encourage the participation of students who are interested in not only investigating in depth a specific subject, but who are also interested in a broader, more integrative approach to science.
The scientific activity of the department is mainly concentrated around the experimental and theoretical research in quantum solid state physics. It includes experimental research of mesoscopic physics, quantum Hall physics, high temperature superconductors, two and one dimensional superconductors, metal-insulator transition, carbon nanotubes, semiconductor nanowires,and study of material growth. The theoretical efforts concentrate on similar subjects with added work on disordered materials, cold atoms, and quantum optics.
The Braun Center for sub micron research is an integral part of the department. It is a modern and well equipped center, with growth (three MBE's) and characterization systems, which allows to conduct experiments on sub micron semiconductor structures under high magnetic filed, normal and high temperature superconductors, and nanowires made of carbon nanotubes and semiconductor nanowires.
