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January 01, 2015
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Date:28TuesdayFebruary 2023Lecture
Fast and Processive Artificial Molecular Motors and Rotors Made of DNA
More information Time 14:00 - 15:00Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Eyal Nir
Department of Chemistry Ben-Gurion UniversityOrganizer Department of Chemical and Structural BiologyContact -
Date:01WednesdayMarch 2023Lecture
Deciphering integration of contradictory signals in epithelial-to-mesenchymal transition
More information Time 10:00 - 11:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Dr. Yaron Antebi
Dept of Molecular GeneticsOrganizer Department of Brain SciencesContact -
Date:02ThursdayMarch 2023Lecture
Optical Imaging and image quantification across scales
More information Time 09:00 - 10:00Location Max and Lillian Candiotty BuildingLecturer Dr. Sefi Addadi
MICC Cell ObservatoryOrganizer Department of Life Sciences Core FacilitiesContact -
Date:05SundayMarch 2023Lecture
TBA
More information Time All dayLocation Sussman Family Building for Environmental SciencesLecturer Ann Pearson Organizer Department of Earth and Planetary SciencesContact -
Date:05SundayMarch 2023Lecture
"Uncovering novel Cardiac Biochemistry from large human cohort studies"
More information Time 09:30 - 10:30Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Dr. Michael Elgart
Harvard Medical School, Department of MedicineOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about "Mechanistic studies of human disease-related biochemis...» "Mechanistic studies of human disease-related biochemistry typically rely on animal models to devise hypotheses and conduct functional testing. The success of this approach is conditioned on conservation of biochemical pathways between humans and the animal, and the ability of the model to recapitulate key features of human disease which is rare . This is rarely true for complex human conditions such as neurological and cardiovascular diseases. In the absence of a suitable animal model, the study of human diseases has been limited to analysis of associations between clinical outcomes and physiological and/or molecular traits. Using the recent availability of multi-dimensional data from very large human cohorts we have devised principally novel approaches to identify associations of biochemicals with existing biochemical pathways in the context of human disease. This new ability allowed us to formulate a new paradigm akin to Koch postulates but applied to mechanistic component identification of complex disease. It relies on identification of putative disease drivers from human data, verification of these findings in animal models, deriving novel mechanism-related associations from the animal model, and back-testing the new associations in human data. This workflow is much more likely to correctly reflect shared biology between the animal model and humans as it pertains to disease, and thus serve as a true tool for mechanistic biochemical research." -
Date:05SundayMarch 2023Lecture
TBD
More information Time 11:30 - 12:30Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Dr. Marco Incarbone & Dr. Marion Clavel
Gregor Mendel Institute of Molecular Plant BiologyOrganizer Department of Plant and Environmental SciencesContact -
Date:06MondayMarch 2023Lecture
Tensor networks, fundamental theorems, and complexity
More information Time 11:00 - 12:00Location Nella and Leon Benoziyo Physics BuildingLecturer Prof. Michael Walter Organizer The Center for Quantum Science and TechnologyContact Abstract Show full text abstract about Tensor networks describe high-dimensional tensors succinctly...» Tensor networks describe high-dimensional tensors succinctly, in terms of a network or graph of local data. Many interesting tensors arise in this way -- from many-body quantum states in physics to the matrix multiplication tensors in algebraic complexity. While widely successful, the structure of tensor networks is still only partially understood. In this talk, I will give a gentle introduction to tensor networks and explain some recent advances in their theory. In particular, we will discuss the significance of the so-called “fundamental theorem”, which is at the heart of much of the success of tensor networks, and explain how to generalize it to higher dimensions. Before our work, "no go" results suggested that such a generalization might not exist!! Along the way, we will see how to turn an undecidable problem into one that admits an algorithmic solution. To achieve this we draw on recent progress in theoretical computer science and geometric invariant theory. -
Date:06MondayMarch 2023Colloquia
Interfaces teach us New Lessons in Chemistry & Physics: Metal Organic Quasinanowires fabricated by Interfacial Electron Beam Lithography exhibit Puzzling Electrical Conduction
More information Time 11:00 - 12:15Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Jacob Sagiv
Dept. of Molecular Chemistry and Materials ScienceOrganizer Faculty of ChemistryContact Abstract Show full text abstract about A 47 years-old story that started with the discovery of an o...» A 47 years-old story that started with the discovery of an ordered organosilane monolayer that assembles itself on various polar surfaces has evolved into an ongoing “research thriller” craving explanations for a series of unusual experimental findings. Using interfacial electron beam lithography – a novel approach to chemical surface patterning that allows fabrication of hybrid inorganic-organic monolayer structures spanning nano-to-macroscale dimensions, we fabricate metal (Ag)-monolayer quasinanowires on silicon with micrometer-centimeter lengths and planned layouts that exhibit puzzling electrical conduction. Depending on the composition and structure of the quasinanowire and the nature of the silicon support, the room-temperature resistivities of such surface entities may vary between that of a practical insulator to some extremely low values. These findings defy rationalization in terms of conventional electrical conduction mechanisms. Interfacial systems with characteristic structural features akin to those of our quasinanowires have, however, been proposed in both the exciton model of high-temperature superconductivity (Little, Ginzburg, 1964-70) and that of superconductivity by the pairing of spatially separated electrons and holes (Lozovik & Yudson, 1976). While gathering additional clues that might shed light on the mystery of our thriller, these theoretical predictions spur us to seek the shining light at the end of the tunnel... -
Date:06MondayMarch 2023Lecture
Ph.D. Defense Seminar -Temporal and spatial genetic diversity of a wild wheat population under climate change
More information Time 15:00 - 16:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Tal Dahan-Meir
Prof. Avraham Levy Dept. of Plant and Environmental Sciences Weizmann Institute of ScienceOrganizer Department of Plant and Environmental SciencesContact -
Date:08WednesdayMarch 2023Lecture
LS Seminars Luncheon
More information Time 12:30 - 14:00Title Discovery of new pathways underlying organelle function using systematic cell biology approachesLocation Nella and Leon Benoziyo Building for Biological SciencesLecturer Prof. Maya Schuldiner
Dept. of Molecular GeneticsOrganizer Faculty of Biochemistry , Faculty of BiologyContact -
Date:08WednesdayMarch 2023Lecture
Circulating tumor cells
More information Time 14:00 - 15:00Lecturer Prof. Nicola Aceto
Department of Biology, ETH Zurich, SwitzerlandOrganizer Dwek Institute for Cancer Therapy ResearchContact -
Date:09ThursdayMarch 2023Lecture
Spatiotemporal Resolution of Conformational Changes in Biomolecules by Pulsed Electron-Electron Double Resonance Spectroscopy
More information Time 09:30 - 10:30Location Gerhard M.J. Schmidt Lecture HallLecturer Dr. Tobias Hett
Clausius Institute of Physical and Theoretical Chemistry, University of BonnOrganizer Clore Institute for High-Field Magnetic Resonance Imaging and SpectroscopyContact Abstract Show full text abstract about Proteins are highly dynamic biomolecules that can undergo li...» Proteins are highly dynamic biomolecules that can undergo ligand-induced
conformational changes, thus often playing a crucial role in biomolecular processes. For
an in-depth understanding of protein function, the conversion of one conformational state
into another has to be resolved over space and time. Pulsed electron-electron double
resonance spectroscopy (PELDOR/DEER) in combination with site-directed spin
labelling (SDSL) is a powerful tool for obtaining distributions of interspin distances in
proteins [1, 2]. It allows for measurements with Angstrom precision, but it cannot directly
determine the time scale and the mechanism of the conformational change. However,
coupling PELDOR with rapid freeze-quench techniques adds the time axis to the
distance distribution and thus permits studying conformational changes with temporal
resolution.
Here, we show that the combination of Microsecond Freeze-Hyperquenching (MHQ) [3]
and PELDOR resolves ligand-triggered conformational changes in proteins on the
Angstrom length and microsecond time scale. It allows taking snapshots along the
trajectory of the conformational change by rapid quenching within aging times of
82-668 μs, and it is applicable at protein amounts down to 7.5 nmol (75 μM, 100 μL) per
time point. We applied MHQ/PELDOR to the cyclic nucleotide-binding domain (CNBD)
of the MloK1 channel from Mesorhizobium loti, which undergoes a conformational
change upon binding of cyclic adenosine monophosphate (cAMP). We observed a
gradual population shift from the apo to the holo state on the microsecond time scale,
but no distinct conformational intermediates (Fig. 1a, b). [4]
Figure 1: a) Interspin distance distributions obtained at different aging times and b) the corresponding
fractions of apo and holo state. c) Free-energy profile of the ligand-induced conformational change.
Corroborated by measurements of ligand-binding kinetics and molecular dynamics (MD)
simulations, we interpret the data in terms of a dwell time distribution. The transitions
across the free-energy barriers (Fig. 1c) i.e., ligand binding and the conformational
change, are on the nanosecond time scale and thus below the time resolution of the
MHQ device. However, the dwell time of the apo state in complex with the cAMP ligand
is in the microsecond range and can be monitored by MHQ/PELDOR. [4]
Literature:
[1] A.D. Milov et al., Fiz. Tverd. Tela 1981, 23, 975-982. [2] G. Jeschke, Annu. Rev. Phys. Chem.
2012, 63, 419-446. [3] A.V. Cherepanov et al., Biochim. Biophys. Acta 2004, 1656, 1-31.
[4] T. Hett et al., J. Am. Chem. Soc. 2021, 143, 6981-6989. -
Date:09ThursdayMarch 2023Lecture
Special Guest Seminar
More information Time 10:00 - 11:00Title “Mapping mitochondrial structure across scales using cellular cryo-electron tomography”Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. Danielle Grotjahn Organizer Department of Molecular GeneticsContact -
Date:09ThursdayMarch 2023Lecture
Daniela Ben-Tov Ph.D. Defense Seminar- Uncovering the Dynamics of Precise Repair at CRISPR/Cas9-induced Double-Strand Breaks
More information Time 14:00 - 15:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Daniela Ben-Tov
Prof. Avraham Levy Dept. of Plant and Environmental Sciences Weizmann Institute of ScienceOrganizer Department of Plant and Environmental SciencesContact -
Date:12SundayMarch 2023Lecture
Soft Matter and Biomaterials: “The Secret Ultrafast Motions of Protein Nanomachines”
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Prof. Gilad Haran
Dept. Chemical and Biological Physics, WISOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Multiple proteins function as nanomachines, and carry out mu...» Multiple proteins function as nanomachines, and carry out multiple specific tasks in the cell by alternating chemical steps with conformational transitions. Single-molecule FRET spectroscopy is a powerful tool for studying the internal motions of proteins. In recent years, we have been using this technique to study a range of protein machines, surprisingly finding in each case microsecond-time-scale internal dynamics. What is the role of these fast motions in the much-slower functional cycles of these machines?
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Date:12SundayMarch 2023Lecture
TBA
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Boswell Wing
ColoradoOrganizer Department of Earth and Planetary SciencesContact -
Date:12SundayMarch 2023Lecture
Shigella flexneri vacuolar rupture : Near-native in cellulo structure-function analysis
More information Time 13:30 - 14:30Location Nella and Leon Benoziyo Building for Biological SciencesOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Shigella flexneri is a bacterial entero-invasive pathogen tr...» Shigella flexneri is a bacterial entero-invasive pathogen transmitted through the fecal/oral route causing bacillary dysentery in humans. Shigella pathogenicity solely relies on a needle-like molecular syringe, the Type 3 Secretion System (T3SS) that injects more than 20 bacterial effectors to infect colonic epithelial cells. The T3SS is composed of a basal body that controls and initiates effector secretion and a needle complex that acts as a conduit for effector delivery. The needle is capped by a tip complex that regulates whether the needle is closed or whether it secretes. Sensing of host cells by the needle tip complex induces a conformational switch that remodels the tip and activates the T3SS to form a channel, the translocon pore at the distal end. Effectors are then actively secreted, promoting cell invasion and endocytosis of the bacteria in a tight vacuole derived from the host plasma membrane called Bacteria Containing Vacuole (BCV). Quickly after entry, the pathogen ruptures its BCV and establish a replicative cytosolic niche. Vacuolar rupture consists of a first step of BCV breakage followed by BCV remnants unpeeling. The team has identified bacterial effectors promoting efficient vacuole unpeeling but the direct role of the T3SS in membrane destabilization is not clear. I have overcome these limitations by investigating the T3SS/vacuole interactions at the onset of vacuolar rupture using a novel cryo-Correlative Light Electron Microscopy (CLEM) workflow applied in situ, during the host-pathogen crosstalk. Cryo-CLEM allows the combination of high-resolution information in 3D, accessed via cryo-Electron Tomography (cryo-ET) to functional information brought by light microscopy. This pipeline benefits from in-house custom-built genetically encoded reporter cell lines which are used to identify precise steps of the infection at high spatiotemporal resolution.
Using this workflow, I collected cryo-ET data on Shigella-infected epithelial cells. I have been able to visualize the Shigella T3SS at molecular resolution providing unprecedented information. Particularly, I am looking at (i) the contact sites between T3SS and BCV membrane; (ii) T3SS morphologies depending on its activation state. Together this work will allow to precisely describe the interplay between host and bacteria processes.
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Date:13MondayMarch 2023Lecture
Systems Biology Seminar 2022-2023
More information Time 10:00 - 11:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchOrganizer Azrieli Institute for Systems BiologyContact -
Date:13MondayMarch 2023Colloquia
From saving pharmaceuticals to saving priceless historical artefacts via saving the planet: understanding nanostructure with x-rays and algorithms.
More information Time 11:00 - 12:00Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. J.L. Billinge
Applied Physics & Applied Mathematics, Columbia UniversityOrganizer Faculty of ChemistryHomepage Contact Abstract Show full text abstract about Nanoparticles and nanostructures are at the heart of next ge...» Nanoparticles and nanostructures are at the heart of next generation technological solutions in sustainable energy, effective new pharmaceuticals and environmental remediation. A key to making progress is to be able to understand the nanoparticle structure, the arrangements of atoms in the nanoparticles and nanoscale structures. Also critical is understanding the distribution of the nanoparticles and how they change in time as devices run and reactions take place. We use advanced x-ray, neutron and electron scattering methods to get at this problem. I will talk about these methods and show some recent success-stories in the fields of sustainable energy, pharmaceuticals and cultural heritage preservation. However, I will also discuss the fundamental limitations on our ability to extract information from the data and how we are now turning to machine learnging and articifical intelligence techniques to give more insights. -
Date:13MondayMarch 2023Lecture
Foundations of Computer Science Seminar
More information Time 11:15 - 12:45Title Recent Progress on Fault Tolerant SpannersLocation Jacob Ziskind BuildingLecturer Greg Bodwin
University of MichiganOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about Given a large input graph, a k-spanner is a sparse subgraph ...» Given a large input graph, a k-spanner is a sparse subgraph that preserves the shortest path distances of the original within an approximation factor of k. When this distance approximation is robust to f failing nodes or edges, the spanner is f-fault tolerant. Fault tolerant spanners and their relatives arise commonly in networking and distributed computing.
There has been a recent flurry of progress on fault tolerant spanners and their relatives, including faster construction algorithms and better tradeoffs between spanner size, error, and level of fault tolerance. We will survey this progress, spanning a sequence of 7 papers over the last 5 years. We will explain the new techniques that have enabled progress, the problems that have been solved, and the problems that remain open.
