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March 25, 2015
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Date:07WednesdayJune 202308ThursdayJune 2023Conference
Michael Sela Memorial Symposium
More information Time 08:00 - 08:00Location The David Lopatie Conference CentreChairperson Ronen AlonHomepage -
Date:07WednesdayJune 2023Lecture
“How atoms jiggle and wiggle in energy materials”
More information Time 10:30 - 11:30Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. David Egger
Dept. Physics, Technical University of MunichOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Energy materials are crystalline, solid-state substances ...»
Energy materials are crystalline, solid-state substances with technological applications in energy-conversion or storage devices that include solar cells and batteries. In our work, we are particularly interested in scenarios where these systems show unusual structural dynamical effects. These effects trigger many puzzling questions in regard to updated structure-property relations and improved theoretical understandings of these solids. In my talk, I will present our recent findings regarding theoretical treatments of structural dynamics in energy materials and how we may use them to improve our understanding of their finite-temperature properties. The results will focus on halide perovskite as well as nitride semiconductors and solid-state ion conductors, which we typically investigate in tandem with experiment.
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Date:08ThursdayJune 2023Lecture
Vision and AI
More information Time 12:15 - 13:15Title Imagic: Text-Based Real Image Editing with Diffusion ModelsLocation Jacob Ziskind BuildingLecturer Shiran Zada
GoogleOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about Text-conditioned image editing has recently attracted consid...» Text-conditioned image editing has recently attracted considerable interest. However, most methods are currently either limited to specific editing types (e.g., object overlay, style transfer), or apply to synthetically generated images, or require multiple input images of a common object. In this paper we demonstrate, for the very first time, the ability to apply complex (e.g., non-rigid) text-guided semantic edits to a single real image. For example, we can change the posture and composition of one or multiple objects inside an image, while preserving its original characteristics. Our method can make a standing dog sit down or jump, cause a bird to spread its wings, etc. — each within its single high-resolution natural image provided by the user. Contrary to previous work, our proposed method requires only a single input image and a target text (the desired edit). It operates on real images, and does not require any additional inputs (such as image masks or additional views of the object). Our method, which we call "Imagic", leverages a pre-trained text-to-image diffusion model for this task. It produces a text embedding that aligns with both the input image and the target text, while fine-tuning the diffusion model to capture the image-specific appearance. We demonstrate the quality and versatility of our method on numerous inputs from various domains, showcasing a plethora of high quality complex semantic image edits, all within a single unified framework -
Date:11SundayJune 2023Lecture
Probing nanocrystal photophysics with spectator excitons
More information Time 10:00 - 11:00Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Sanford Ruhman
Institute of Chemistry, HUJIOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Femtosecond pump-probe experiments on nanocrystals are inter...» Femtosecond pump-probe experiments on nanocrystals are interpreted primarily in terms of state filling of the states involved in the intense band edge absorption features, and bi-exciton shifting which changes the resonance energy of the probe pulse due to presence of pump induced excitations. Results have been interpreted to show 1) that “hot” excitons will relax to the lowest available levels in the conduction band in ~1 ps, and 2) that said intense band edge exciton transition will be bleached linearly with excitons until the underlying states are completely filled. In the talk we describe a new approach involving “spectator excitons” to test these accepted views. It consists of comparing pump-probe experiments on pristine samples, with equivalent scans conducted on the same sample after it has been saturated in cold mono-excitons. We show how this method has uncovered previously unrecognized spin blockades in the relaxation of hot multi-exciton states in CdSe NCs, and simply detects stimulated emission signals even in presence of overlapping absorption. We report specific difficulties of applying this approach on perovskite crystals leading to controversial determination that in quantum confined CsPbBr3 bi-exciton interactions are positive (repulsive) and describe recent time resolved emission data which challenges this result. -
Date:11SundayJune 2023Lecture
Soft Matter and Biomaterials: Membrane remodelling in viral infection and migrasome formation
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Dr. Raya Sorkin
School of Chemistry, TAUOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Fundamental understanding of physiological processes that oc...» Fundamental understanding of physiological processes that occur at biological membranes, such as membrane fusion, necessitates addressing not only the biochemical aspects, but also biophysical aspects such as membrane mechanical properties and membrane curvature. In this talk, I will show how we combine membrane model systems, micropipette aspiration, optical tweezers and confocal fluorescence microscopy to study membrane shaping and membrane fusion processes. I will describe a new tool we developed, where we form membrane bilayers supported on polystyrene microspheres which can be trapped and manipulated using optical tweezers. Using this approach, we demonstrate successful measurements of the interaction forces between the Spike protein of SARS CoV-2 and its human receptor, ACE2. We further use bead-supported membranes interacted with aspirated vesicles to reveal the inhibitory effect of membrane tension on hemifusion. I will also describe a particular case of membrane shaping during the formation of the newly discovered organelle termed migrasome. We show that tetraspanin proteins involved in migrasome formation strongly partition into curved membrane tethers, and we reveal a novel, two-step process of migrasome biogenesis.
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Date:11SundayJune 2023Lecture
TBA
More information Time 11:00 - 12:00Location Sussman Family Building for Environmental SciencesLecturer Yael Leshno Organizer Department of Earth and Planetary SciencesContact -
Date:12MondayJune 202313TuesdayJune 2023Conference
Biomaterials: From Basic Science of Nature's Material Design to the Biotech Industry
More information Time 08:00 - 08:00Chairperson Ulyana ShimanovichHomepage -
Date:12MondayJune 2023Conference
2023 Israeli meeting on RNA Therapeutics
More information Time 08:00 - 08:00Chairperson Igor Ulitsky -
Date:12MondayJune 2023Lecture
Systems Biology Seminar 2022-2023
More information Time 10:00 - 11:00Location Arthur and Rochelle Belfer Building for Biomedical ResearchOrganizer Azrieli Institute for Systems BiologyContact -
Date:12MondayJune 2023Lecture
Reprogramming the topology of the nociceptive circuit in C. elegans reshapes sexual behavior
More information Time 11:00 - 12:15Location Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Vladyslava Pechuk
Dr. Meital Oren LabOrganizer Department of Brain SciencesContact Abstract Show full text abstract about The effect of the detailed connectivity of a neural circuit ...» The effect of the detailed connectivity of a neural circuit on its function and the resulting
behavior of the organism, is a key question in many neural systems Here, I study the circuit for
nociception in C elegans which is composed of the same neurons in the two sexes, that are wired
differently I set out to elucidate how the topological design of a compact neuronal circuit affects its
behavioral output, how genetic sex affects the connectivity and dynamics of a circuit, and how
specific circuit components orchestrate together to establish the behavioral sexual dimorphism I
used behavioral assays, optogenetics calcium and glutamate imaging, measurement of protein
expression, artificial connectivity, molecular and genetic tools, and show that the nociceptive sensory
neurons respond similarly in the two sexes, yet the animals display sexually dimorphic behaviors to
the same aversive stimuli To uncover the role of the downstream network topology in shaping
behavior, I measured the neuronal activity of a key interneuron, and found dimorphic responses to
the stimulus as well as dimorphic intrinsic basal interneuron activity I then showed that neuron
specific genetic sex plays a role in shaping connectivity and circuit dynamics, and proceed to an
artificial subtle synaptic rewiring which flips behavior between sexes Interestingly, when presented
with aversive cues, rewired males were compromised in finding mating partners, suggesting that
network topologies that enable efficient avoidance of noxious cues have a reproductive " My
results present a deconstruction of the design of a neural circuit that controls sexual behavior, and
how to reprogram it -
Date:12MondayJune 2023Colloquia
A link between viscoelastic mechanics and biochemical function of proteins
More information Time 11:00 - 12:15Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Tsvi Tlusty
Department of Physics, National University in Ulsan, South KoreaOrganizer Faculty of ChemistryHomepage Contact Abstract Show full text abstract about Our starting point is the idea that specific regions in the ...» Our starting point is the idea that specific regions in the protein evolve to
become flexible viscoelastic elements facilitating conformational changes
associated with function, especially allostery. Simple theories show how
these regions can emerge through evolution and indicate that they are
easily identified by amino acid rearrangement upon binding (i.e., shear
motion). Surprisingly, AlphaFold can also identify such regions by
computing the shear induced by a single or a few mutations. With these
methods, we have tested the concept of shear and its functional relevance
in a variety of proteins. I will present recent results from an experimental
study of the enzyme guanylate kinase linking shear, large scale motions,
and catalytic function. Altogether, the present findings paint a physical
picture of proteins as viscoelastic machines with sequence encoded
specifications, and we will discuss its general implications for
understanding proteins and designing new ones. -
Date:12MondayJune 2023Lecture
Foundations of Computer Science Seminar
More information Time 11:15 - 12:15Title A Combinatorial Characterization of Minimax in 0/1 GamesLocation Jacob Ziskind BuildingLecturer Shay Moran
TechnionOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about We will discuss a generalization of the celebrated Minimax T...» We will discuss a generalization of the celebrated Minimax Theorem (von Neumann, 1928) for binary zero-sum games. A simple game which fails to satisfy Minimax is Ephraim Kishon's "Jewish Poker" (see [1,2] below). In this game, each player picks a number and the larger number wins. The payoff matrix in this game is *infinite triangular*. We show this is the only obstruction: if a game does not contain triangular submatrices of unbounded sizes then the Minimax Theorem holds. This generalizes von Neumann's Minimax Theorem by removing requirements of finiteness or compactness.
[1] http://www.ephraimkishon.de/en/my_favorite_stories.htm (english)
[2] https://gesherfilmfund.org.il/documents/מקבץ יצירות - אפרים … (hebrew, third story)
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Date:13TuesdayJune 2023Lecture
Mechanisms of sperm-egg fusion in mammals
More information Time 10:00 - 11:00Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Dr. Nicolas Brukman
Dept. of Biology Technion - Israel Inst. of TechnologyOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Fertilization is a complex multistep process that culminates...» Fertilization is a complex multistep process that culminates with the formation of a zygote and the initiation of embryonic development. My main research interest is understanding the mechanisms underlying the final step of fertilization, sperm-egg fusion. The sperm-specific protein IZUMO1 anchors sperm by its binding with an egg-membrane receptor (JUNO). My results indicate that IZUMO1 has a second crucial role: allowing genetic exchange by inducing membrane fusion. More recently, I described a new phenomenon, whereby sperm can induce the fusion of somatic cells expressing ectopic JUNO, in a viral-like mechanism. This occurs under specific conditions, which make it a robust research and clinical tool. Altogether, this research will shed light on the climax of fertilization, with implications for infertility treatment and birth control. -
Date:13TuesdayJune 2023Lecture
Joint Chemical and Biological Physics and Molecular Chemistry and Materials Science Guest Seminar
More information Time 10:00 - 11:00Title Tunneling and Zero-Point Energy Effects in Multidimensional Hydrogen Transfer ReactionsLocation Gerhard M.J. Schmidt Lecture HallLecturer Dr Yair Litman
University of CambridgeOrganizer Department of Chemical and Biological PhysicsContact Abstract Show full text abstract about ydrogen transfer reactions play a prominent role in nature a...» ydrogen transfer reactions play a prominent role in nature and many technological applications. Despite appearing to be simple reactions, they constitute complex processes where nuclear quantum effects (NQE) such as zero-point energy and nuclear tunneling play a decisive role even at ambient temperature. In this talk, I will show how state-of-the-art methodologies based on the path integral formulation of quantum mechanics in combination with the density functional approximation provide the unique possibility to theoretically address these effects in complex environments. The first part of the talk will focus on the porphycene molecule in the gas phase and adsorbed on metallic surfaces. The porphycene molecule constitutes a paradigmatic example of a molecular switch and has recently received great attention due to its intriguing hydrogen dynamics. I will demonstrate how a correct treatment of NQE, as well as the inclusion of multidimensional anharmonic couplings, are essential to obtain qualitatively correct results regarding the non-trivial temperature dependence of the hydrogen transfer rates and vibrational spectra [1-3]. Finally, I shall also mention some of our recent results for hydrogen diffusion on metals for which non-adiabatic effects, in addition to NQE, play a significant role and can lead to “quantum localization” [4-6].
[1] Y. Litman, J. O. Richardson, T. Kumagai, and M. Rossi, J. Am. Chem. Soc. 141, 2526 (2019)
[2] Y. Litman, J. Behler, and M. Rossi, Faraday Discuss. 221, 526 (2020)
[3] Y. Litman and M. Rossi, Phys. Rev. Lett. 125, 216001 (2020)
[4] Y. Litman, E. S. Pos. C. L. Box, R. Martinazzo, R. J. Maurer, and M. Rossi, J. Chem. Phys. 156, 194106 (2022)
[5] Y. Litman, E. S. Pos. C. L. Box, R. Martinazzo, R. J. Maurer, and M. Rossi , J. Chem. Phys. 156, 194107 (2022)
[6] O. Bridge, R. Martinazzo, S. C. Althorpe, Y. Litman, in preparation (2023)
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Date:13TuesdayJune 2023Lecture
Special guest seminar with Nadav Ahituv
More information Time 11:00 - 11:00Title Functional characterization and therapeutic targeting of gene regulatory elementsLocation Arthur and Rochelle Belfer Building for Biomedical ResearchLecturer Prof. Nadav Ahituv, Sandi Britton
Institute for Human Genetics University of California San FranciscoOrganizer Department of Molecular GeneticsContact -
Date:13TuesdayJune 2023Lecture
Beyond the arcuate fasciculus: A multiplicity of language pathways in the human brain
More information Time 12:30 - 13:30Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Michal Ben-Shachar
The Gonda Multidisciplinary Brain Research CenterBar-Ilan UniversityOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Early models of the neurobiology of language targeted a sing...» Early models of the neurobiology of language targeted a single white matter pathway, the left arcuate fasciculus, as the critical language pathway in the human brain. Current models, supported by structural and functional imaging data, describe a more elaborate scheme of semi-parallel and bilateral white matter pathways that implement a variety of linguistic processes. In this talk, I will describe our current understanding of the language connectome, and highlight some recent additions to this scheme, including the frontal aslant tract and cerebellar pathways. I will expand on the role of ventral language pathways in extracting word structure, and on the role of dorsal and cerebellar pathways in mediating speech fluency and written text production. Our experimental approach combines diffusion MRI and targeted behavioral measurements, relating specific aspects of language processing with structural tract properties assessed in the same individual. Our findings show that cognitive associations with tractometry generalize across independent samples, languages, modalities and tasks. I will discuss the implications of our findings in the context of dual stream models of spoken and written language processing.
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Date:13TuesdayJune 2023Lecture
Translational Chemical Biology
More information Time 14:00 - 15:00Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Xiaoguang Lei
Peking UniversityOrganizer Department of Chemical and Structural BiologyContact -
Date:14WednesdayJune 2023Lecture
Machine Learning and Statistics Seminar
More information Time 11:15 - 12:15Title Assessing and enhancing ML systems' adversarial robustness in the real worldLocation Jacob Ziskind BuildingLecturer Mahmood Sharif
TAUOrganizer Department of Computer Science and Applied MathematicsContact Abstract Show full text abstract about Adversarial examples have emerged as a profound challenge fo...» Adversarial examples have emerged as a profound challenge for machine learning (ML), sparking interest in developing adversarially robust ML models and reliable techniques for assessing robustness. This talk will present our recent efforts on these fronts, offering attacks and defenses under practical constraints. First, I will introduce our work on black-box attacks composing and integrating data augmentations into evasion techniques to promote transferability to unseen models. Second, I will describe our work fooling face-recognition systems via physically realized adversarial accessories attackers can wear to dodge recognition or impersonate others. We evaluated face-recognition systems relying on different sensor types, including visible-light and near-infrared cameras, against evasion and found all were highly vulnerable, even when defended by state-of-the-art techniques. Third, I will present practical attacks against ML-based malware detection. Our attacks interweave binary-diversification techniques and optimization frameworks to mislead malware detection while preserving binaries' functionality. Unlike prior work, ours manipulate instructions that are a functional part of the binary, rendering them particularly challenging to defend against. I will conclude with our attempts to enhance the robustness of ML-based malware detection via adversarial training.
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Date:15ThursdayJune 2023Lecture
“Parahydrogen Enhanced Magnetic Resonance - a tale of spin physics, materials and catalysis”
More information Time All dayLocation Gerhard M.J. Schmidt Lecture HallLecturer Dr. Stefan Glogger
Max Plank Institute for Multidisciplinary Sciences, GottingenOrganizer Clore Institute for High-Field Magnetic Resonance Imaging and SpectroscopyContact Abstract Show full text abstract about Catalysts are essential in increasing reaction rates of ch...»
Catalysts are essential in increasing reaction rates of chemical reactions. They have not only shaped our modern world but are also used by nature in many biochemical reactions. Understanding catalytic mechanisms and developing new catalysts holds promise to e.g. solve energy challenges of our society.
Before this background, I am developing new methodologies based on magnetic resonance to unravel processes in catalysis and work towards nano-materials in which nuclear spin states can be controlled
during reactions. Thereby, I am making use of the technique of parahydrogen induced polarization, which is an enhancement technology in NMR, boosting signals by four orders of magnitude. This approach uses parahydrogen, a spin isomer of normal hydrogen gas that interacts with a catalyst and undergoes a chemical reaction. During this process, the spin order of parahydrogen is converted into largely enhanced magnetic resonance signals and acts as a spy molecule for the catalytic process.
In recent years my group has pioneered the use of parahydrogen to study metalloenzymes and more in specific hydrogenases. Hydrogenases are considered nature's blueprint for efficient hydrogen activation catalysts. Although they represent an important class of enzymes, the catalytic mechanisms leading to hydrogen activation are not fully understood. My developed tools allowed for new insights that no other analytical technology could provide and thereby refined details of the catalytic mechanisms.
Additionally, my group has been researching the development of nano-catalysts that can allow for maintaining the para-hydrogen spin order on surfaces. This promises on one side to develop new enhancement strategies in particular to boost the signal of mobile protons that can e.g. exchange with proteins or small molecules leading to their further enhancements in solution. On the other side, a precise control of nuclear spin states during chemical reactions in solution can allow for the future production of
large quantities of spin-controlled chemicals such as para-water or formaldehyde in the para-state. These are chemicals found in e.g. interstellar clouds showing different ratios between ortho (triplet) and para (singlet) states as compared to earth and are thought to display different reactivities. Understanding the effect of nuclear spin states on reactions could lead to new application in chemical reactions and catalysis
in the future.
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Date:15ThursdayJune 2023Lecture
Chemical and Biological Physics Guest Seminar
More information Time 11:00 - 11:00Title Ratchet based ion pumpsLocation Gerhard M.J. Schmidt Lecture HallLecturer Dr Gideon Segev
School of Electrical Engineering, Tel Aviv UniversityOrganizer Department of Chemical and Biological PhysicsContact Abstract Show full text abstract about Even though highly selective ion pumps can be found in every...» Even though highly selective ion pumps can be found in every living cell membrane, artificial, membrane-based ion selective separation is a longstanding unmet challenge in science and engineering. The development of a membrane-based ion separation technology can drive a dramatic progress in a wide range of applications such as: water treatment, bio-medical devices, extraction of precious metals from sea water, chemical sensors, solar fuels and more. In this seminar I will discuss our theoretical and experimental demonstration of ion pumps based on an electronic flashing ratchet mechanism.
Electronic flashing ratchets are devices that utilize modulation in a spatially varying electric field to drive steady state current. Like peristaltic pumps, where the pump mechanism is not in direct contact with the pumped fluid, electronic ratchets induce net current with no direct charge transport between the power source and the pumped charge carriers. Thus, electronic ratchets can be used to pump ions in steady state with no electrochemical reactions between the power source and the pumped ions resulting in an “all electric” ion pump.
Ratchet-based ion pumps (RBIPs) were fabricated by coating the two surfaces of nano-porous alumina wafers with gold forming nano-porous capacitor-like devices. The electric field within the nano-pores is modulated by oscillating the capacitors voltage. Thus, when immersed in solution, ions within the pores experience a modulating electric field resulting in ratchet-based ion pumping. The RBIPs performance was studied for various input signals, geometries, and solutions. RBIPs were shown to drive ionic current densities of several μA/cm2 even when opposed by an electrostatic force. A significant ratchet action was observed with input signal amplitudes as low as 0.1V thus demonstrating that RBIPs can drive an ionic current with no associated redox reactions. Simulations show that frequency dependent flux inversions in ratchet systems may pave the way towards ion selective RBIPs.
