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February 01, 2019
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Date:21TuesdayJanuary 2020Lecture
PhD defense presentation by Lihi Radomir (Shachar Lab)
More information Time 10:30 - 12:30Title “SLAM receptors in maintenance of B cells in health and autoimmunity.”Location Max and Lillian Candiotty BuildingLecturer Lihi Radomir Organizer Department of Systems ImmunologyContact -
Date:21TuesdayJanuary 2020Lecture
Towards Advanced Materials: From Unique Peptidomimetics to High-Performance Thermosets
More information Time 11:00 - 12:00Location Helen and Milton A. Kimmelman BuildingLecturer Dr. Revital Kaminker
UC Santa BarbaraOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about High-performance materials with elevated operating temperatu...» High-performance materials with elevated operating temperatures and robust mechanical properties, are essential for a wide variety of emerging applications, such as in functional adhesives, automobiles, aerospace, and coatings. Polyhexahydrotriazines (PHT) are new promising high-performance thermosets exhibiting enhanced thermal and mechanical properties.1 The performance and utility of PHT-based materials is further enhanced by the ability to design new material properties based on changes in the molecular structure.2 We demonstrated a new solvent-free approach for the fabrication of PHT based on low-melting-point diamines enabling the production of adhesives with comparable properties to well-established epoxy adhesives. Furthermore, these versatile materials could be degraded at different rates in acidic conditions based on the nature of the starting diamine molecular structure. Controlling the degradation is extremely valuable in composites and adhesives in order to be able to recycle and rework the materials.
In the second part of my talk I will show how the ability to control and adapt peptide conformation is crucial for the rational design and control of their function.3,4 We demonstrated by end-to-end distance measurements using Double Electron-Electron Resonance (DEER) EPR method that we can tune the conformations of the backbone while maintaining the sequence of the side-chains. Interestingly, tuning of the backbone has an effect on peptide propensity to aggregate or stabilize nanoparticles. Such knowledge is critical for designing new materials for various biotechnological applications.
1. J. M. García, G. O. Jones, K. Virwani, B. D. McCloskey, D. J. Boday, G. M. ter Huurne, H. W. Horn, D. J. Coady, A. M. Bintaleb, A. M. S. Alabdulrahman, F. Alsewailem, H. A. A. Almegren, J. L. Hedrick. Science 2014, 344, 732–735.
2. R. Kaminker, E. B. Callaway, N. D. Dolinski, S. M. Barbon, M. Shibata, H. Wang, J. Hu, C. J. Hawker. Solvent-Free Synthesis of High-Performance Polyhexahydrotriazine (PHT) Thermosets. Chem. Mater. 2018, 30, 8352–8358.
3. R. Kaminker, I. Kaminker, W. R. Gutekunst, Y. Luo, S.-H. Lee, J. Niu, C. J. Hawker, S. Han. Tuning Conformation and Properties of Peptidomimetic Backbones through Dual N/Cα-Substitution. Chem. Commun. 2018, 54, 5237–5240.
4. R. Kaminker, A. Anastasaki, W. R. Gutekunst, Y. Luo, S.-H. Lee, C. J. Hawker. Tuning of Protease Resistance in Oligopeptides through N-alkylation. Chem. Commun. 2018, 54, 9631–9634.
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Date:21TuesdayJanuary 2020Lecture
Prof. Ron Milo - Who weighs more? The global census of nature
More information Time 12:00 - 12:00Title Who weighs more? The global census of natureLocation Dolfi and Lola Ebner AuditoriumLecturer Prof. Ron Milo Organizer Communications and Spokesperson DepartmentHomepage Contact -
Date:21TuesdayJanuary 2020Lecture
Visualizing activity dependent signaling dynamics in intact neuronal circuits
More information Time 12:30 - 12:30Location Gerhard M.J. Schmidt Lecture HallLecturer Dr. Tal Laviv
Max Planck Florida Institute for NeuroscienceOrganizer Department of Brain SciencesContact Abstract Show full text abstract about Sensory experience can change the structure and function o...»
Sensory experience can change the structure and function of neurons in the brain over a wide range of timescales, from milliseconds-second modulation of synaptic activity to long-lasting alterations of genetic programs, lasting minutes to hours. While conversion of synaptic activity into long-lasting nuclear signaling is vital for learning and neuronal development, we still lack a clear understanding of its basic operating principles. To address this, I will describe recent advancements using two-photon fluorescence lifetime imaging and new biosensors which allowed us to image the activity of CREB, an activity-dependent transcription factor important for synaptic plasticity, at single cell resolution in awake mice. Simultaneous imaging of CREB and Ca2+ in the visual cortex permitted us to explore how sensory deprivation (dark-rearing) can modulate the sensitivity and duration of CREB activity to sensory-evoked Ca2+ elevations. Future work using this approach will allow us to unravel synapse to nucleus signaling dynamics underlying experience-dependent plasticity in the brain.
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Date:21TuesdayJanuary 2020Lecture
Visualizing activity dependent signaling dynamics in intact neuronal circuits
More information Time 12:30 - 13:30Location Gerhard M.J. Schmidt Lecture HallLecturer Dr. Tal Laviv - Joint Seminar - Dept. of Neurobiology & Biomolecular Sciences
Max Planck Florida Institute for NeuroscienceOrganizer Department of Biomolecular SciencesContact Abstract Show full text abstract about Sensory experience can change the structure and function of ...» Sensory experience can change the structure and function of neurons in the brain over a wide range of timescales, from milliseconds-second modulation of synaptic activity to long-lasting alterations of genetic programs, lasting minutes to hours. While conversion of synaptic activity into long-lasting nuclear signaling is vital for learning and neuronal development, we still lack a clear understanding of its basic operating principles. To address this, I will describe recent advancements using two-photon fluorescence lifetime imaging and new biosensors which allowed us to image the activity of CREB, an activity-dependent transcription factor important for synaptic plasticity, at single cell resolution in awake mice. Simultaneous imaging of CREB and Ca2+ in the visual cortex permitted us to explore how sensory deprivation (dark-rearing) can modulate the sensitivity and duration of CREB activity to sensory-evoked Ca2+ elevations. Future work using this approach will allow us to unravel synapse to nucleus signaling dynamics underlying experience-dependent plasticity in the brain. -
Date:21TuesdayJanuary 2020Lecture
Connecting the Dots: Multiple-substrate orchestration in bacterial type IV secretion systems
More information Time 14:00 - 15:00Location Helen and Milton A. Kimmelman BuildingLecturer Dr. Amit Meir
Yale UniversityOrganizer Department of Chemical and Structural BiologyContact -
Date:22WednesdayJanuary 2020Lecture
IMM Guest seminar- Dr. Ela Elyada, will lecture on "Uncovering fibroblast heterogeneity in pancreatic cancer".
More information Time 11:00 - 12:00Location Wolfson Building for Biological ResearchOrganizer Department of Systems ImmunologyContact -
Date:22WednesdayJanuary 2020Lecture
Chemical and Biological Physics Guest Seminar
More information Time 11:00 - 11:00Title Phase transitions in membranes and gels, and their potential function in living cellsLocation Perlman Chemical Sciences BuildingLecturer Dr Matan Mussel, Amiram Debesh
NIH, USAOrganizer Department of Chemical and Biological PhysicsContact Abstract Show full text abstract about Soft matter systems offer a useful framework to study minima...» Soft matter systems offer a useful framework to study minimal models for living cells, helping to explain and quantify various aspects of biological functions in terms of macroscopic variables, symmetries, and universal properties. In this talk I will describe two such materials with particular focus on phenomena that arise when the system is near a phase transition. In the first part, I will describe a theoretical model of sound in lipid membranes near phase transition that corresponds to observations of nonlinear sound pulses in lipid monolayers as well as action potentials in living cells. Key properties are sigmoidal response to stimulation amplitude, and annihilation upon collision. I will explain the role of the phase diagram in producing the nonlinear properties and how sound in lipid membranes propagates thermal, electrical, and chemical variations in addition to the well-known mechanical changes. In the second part of the talk, I will describe a volume phase transition induced by the exchange of mono- and divalent cations in a polyelectrolyte hydrogel model. Ion-exchange and volume phase transition play a key role in several physiological functions where biopolymers are exposed to both mono- and multivalent counterions. These functions include, for instance, the packaging of DNA, andthe storage and release of cell secretory products. Our observations suggest that although the state diagram of the model system depends on many parameters of the gel and surrounding fluid, the volume phase transition exhibits universal properties. Osmotic swelling pressure measurements further reveal that both the second and third virial coefficients decrease with increasing divalent cation concentration until the volume transition is reached. -
Date:23ThursdayJanuary 2020Colloquia
Growing Droplets in Cells and Gels
More information Time 11:15 - 12:30Location Edna and K.B. Weissman Building of Physical SciencesLecturer Eric Dufresne
ETHOrganizer Faculty of PhysicsContact Abstract Show full text abstract about To function effectively, living cells compartmentalize myria...» To function effectively, living cells compartmentalize myriad chemical reactions. In the classic view, distinct functional volumes are separated by thin oily-barriers called membranes. Recently, the spontaneous sorting of cellular components into membraneless liquid-like domains has been appreciated as an alternate route to compartmentalization.
I will review the essential physical concepts thought to underly these biological phenomena, and outline some fundamental questions in soft matter physics that they inspire. Then, I will focus on the coupling of phase separation to elastic stresses in polymer networks. Using a series of experiments spanning living cells and synthetic materials, I will demonstrate that bulk mechanical stresses dramatically impact every stage in the life of a droplet, from nucleation and growth to ripening and dissolution.
These physical phenomena suggest new mechanisms that cells could exploit to regulate phase separation, and open new routes to the assembly of functional materials
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Date:23ThursdayJanuary 2020Lecture
Identification of similarities in archaeological collections using deep learning algorithms: a Levantine case study
More information Time 11:30 - 12:30Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Avi Resler
Electrical Engineering, Tel Aviv UniversityContact Abstract Show full text abstract about Artefacts that are found in archaeological excavations are o...» Artefacts that are found in archaeological excavations are often recognized by experts, who compare their appearance to other labeled objects that they have seen before or present in archaeological catalogs. Since this procedure may be subjective, scientific methods that aid archaeologists have become increasingly popular.
We have developed two machine learning tools which capture the similarity between two artefacts or similarities between groups of artefacts based on their RGB images. For the first antique recognition tool, we used face recognition deep neural network architecture, to measure the "archaeological" distance between images. In the second community detection tool, we aggregate similarities between images and measure the distance between assemblages - i.e., group of images. Based on that we applied a network-theory community detection algorithm, to find groups of archaeological sites that are linked to each other.
To test our methods, we used a highly diverse dataset of Israeli antiques. This dataset is a good case study due to geographical proximity between archaeological sites and the presence of artefacts from a wide range of archaeological ages. -
Date:23ThursdayJanuary 2020Lecture
Regulating the regulators:
More information Time 13:00 - 14:00Title Regulation of NK cell intracellular inhibitory immune checkpoint to govern anti-tumor immunityLocation Max and Lillian Candiotty BuildingLecturer Prof. Mira Barda-Saad
Bar Ilan UniversityOrganizer Department of Immunology and Regenerative BiologyContact -
Date:23ThursdayJanuary 2020Lecture
Pelletron meeting - by invitation only
More information Time 16:00 - 17:30Contact -
Date:26SundayJanuary 2020Lecture
Quantifying Holocene rainfall and evaporation in East Asia
More information Time 11:00 - 11:00Location Sussman Family Building for Environmental SciencesLecturer Yoni Goldsmith
Hebrew University of JerusalemOrganizer Department of Earth and Planetary SciencesContact -
Date:26SundayJanuary 2020Lecture
Mechanical interaction between cells in fibrous environments
More information Time 11:00 - 12:00Location Perlman Chemical Sciences BuildingLecturer Dr. Ayelet Lesman
School of Mechanical Engineering, Faculty of Engineering, Tel-Aviv UniversityOrganizer Department of Molecular Chemistry and Materials ScienceContact Abstract Show full text abstract about Tissues are made up of cells and an extracellular matrix (EC...» Tissues are made up of cells and an extracellular matrix (ECM), a cross-linked network of fibers that exhibits complex mechanics. Cells actively alter the ECM structure and mechanics by applying contractile forces. These forces can propagate far into the matrix and allow for remote cellular sensing. We study experimentally and computationally how cell-generated forces are transmitted in fibrous environments, the associated physical mechanisms, and the ability of the propagated forces to support mechanical interaction between distant cells. Also, we demonstrate how the dynamic changes in the ECM structure can lead to improve transport of molecules traveling between the cells, facilitating mechano-biochemical interactions. Such long-range force interactions through the ECM can drive large-scale cooperative biological processes, such that occur during wound healing and morphogenesis. Our work can also provide design parameters for biomaterials used in tissue engineering applications. -
Date:26SundayJanuary 2020Lecture
Chemical and Biological Physics Guest Seminar
More information Time 14:00 - 15:00Title Non-Genetic “Optogenetics”: Silicon Based Bio-Interfaces for Multi-scale Optical ModulationLocation Perlman Chemical Sciences BuildingLecturer Dr Menahem (Hemi) Rotenberg, Amiram Debesh
The James Franck Institute, the University of ChicagoOrganizer Department of Chemical and Biological PhysicsContact Abstract Show full text abstract about Bioelectronics for cellular interrogation requires a minimal...» Bioelectronics for cellular interrogation requires a minimally invasive introduction of an electrical probe to the cell. Despite tremendous developments in the field of electroceuticals in the past decades, the available technologies are still associated with major limitations. Micropipette electrodes, micro- and nanoelectrode arrays, and nano-field effect transistors allow intracellular access with extremely high spatial resolution. However, these technologies are substrate-bound, do not allow reconfigurable recording or stimulation, and lack deep tissue access, which limits their use to in vitro application. Optogenetics can offer numerous mechanistic insights into cellular processes, but its spatial resolution is limited, especially for 3D tissues. Moreover, it requires genetic modification, which limits its potential therapeutic applications. In this talk, I will present my recent studies of developing new approaches for bio-interfaces using silicon micro- and nanostructures for non-genetic optical modulation, spanning from sub cellular interrogation with extremely high spatial resolutions to whole organ optical modulation. For sub-cellular interrogation, we used tailored made photovoltaic silicon nanowires with p-i-n core-shell design. These nanowires were hybridized with living myofibroblasts and used as free sanding cell-silicon hybrids with leadless optical modulation capabilities. We used focused laser to perform intracellular electrical interrogation with high, sub-cellular spatial resolution. Thereafter, we used these hybrids to tackle a long-standing debate regarding electrical coupling between myofibroblasts and cardiomyocytes in vivo, by interrogating specific myofibroblasts within the 3D volume of the cardiac tissue. We also show this technology’s utility for neuronal investigation by hybridizing myelinating oligodendrocytes and interfacing them with neurons, allowing the investigation of calcium transients’ role in the myelination process with unprecedented spatial control. For whole organ interface we used flexible single crystalline silicon membranes, that were able to adhere and wrap around the heart and sciatic nerve. We used optical stimulation to perform heart pacing at different location on the heart, and sciatic nerve excitation. These results demonstrate potential biomedical applications for cardiac resynchronization therapy and sciatic nerve neuro-regenerative treatments. -
Date:27MondayJanuary 2020Conference
Israeli Fly meeting 2020
More information Time 08:00 - 08:00Location The David Lopatie Conference CentreChairperson Oren Schuldiner -
Date:27MondayJanuary 2020Colloquia
Annual Pearlman lecture - Catalysts Live & Up Close: Hunting for the Hidden Chemistry in Catalysis
More information Time 11:00 - 12:15Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Bert M. Weckhuysen
University of UtrechtOrganizer Faculty of ChemistryContact -
Date:27MondayJanuary 2020Lecture
Braginsky Center for the Interface between the Sciences and the Humanities
More information Time 11:00 - 11:00Title Evolutions: Science as StorytellingLocation Dolfi and Lola Ebner AuditoriumLecturer Prof. Oren Harman
Science, Technology and Society, Bar Ilan UNiversityOrganizer Braginsky Center for the Interface between Science and the HumanitiesContact -
Date:27MondayJanuary 2020Lecture
Singlet oxygen as an essential component in plant stress response
More information Time 14:00 - 14:00Title PhD Thesis Defense - Room 690C - Floor 6Location Nella and Leon Benoziyo Building for Biological SciencesLecturer Tomer Chen
Prof. Robert Fluhr's Lab., Dept. of Plant and Environmental Sciences, WISOrganizer Department of Plant and Environmental SciencesContact -
Date:27MondayJanuary 2020Lecture
Inferring the dynamics of learning from sensory decision-making behavior
More information Time 14:00 - 14:00Location Gerhard M.J. Schmidt Lecture HallLecturer Prof. Jonathan Pillow
Dept of Psychology, Princeton UniversityOrganizer Department of Brain SciencesContact Abstract Show full text abstract about The dynamics of learning in natural and artificial environme...» The dynamics of learning in natural and artificial environments is a problem of great interest to both neuroscientists and artificial intelligence experts. However, standard analyses of animal training data either treat behavior as fixed, or track only coarse performance statistics (e.g., accuracy and bias), providing limited insight into the dynamic evolution of behavioral strategies over the course of learning. To overcome these limitations, we propose a dynamic psychophysical model that efficiently tracks trial-to-trial changes in behavior over the course of training. In this talk, I will describe recent work based on a dynamic logistic regression model that captures the time-varying dependencies of behavior on stimuli and other task covariates. We applied our method to psychophysical data from both human subjects and rats learning a sensory discrimination task. We successfully tracked the dynamics of psychophysical weights during training, capturing day-to-day and trial-to-trial fluctuations in behavioral strategy. We leverage the model's flexibility model to investigate why rats frequently make mistakes on easy trials, demonstrating that so-called "lapses" often arise from sub-optimal weighting of task covariates. Finally, I will describe recent work on adaptive optimal training, which combines ideas from reinforcement learning and adaptive experimental design to formulate methods for inferring animal learning rules from behavior, and using these rules to speed up animal training.
