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February 01, 2019

  • Date:04TuesdayJanuary 2022

    The σ₂ receptor: From a pharmacological curiosity to structure-based drug discovery

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    Time
    14:00 - 15:00
    Location
    via Zoom
    LecturerDr. Assaf Alon
    Harvard Medical School
    Organizer
    Department of Chemical and Structural Biology
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    Lecture
  • Date:05WednesdayJanuary 2022

    Investigating the mechanisms underlying the stable coexistence of multiple maps for the same environment

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    Time
    10:00 - 11:00
    Title
    Student Seminar - MSc Thesis Defense - ZOOM -
    LecturerAlice Eldar- MSc Thesis Defense
    Prof. Yaniv Ziv, Lab Dept of Brain Sciences, WIS
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Hippocampal place cells fire at a high rate whenever an anim...»
    Hippocampal place cells fire at a high rate whenever an animal is in a specific location in an environment and are thought to support spatial and episodic memory. When an animal visits different environments, place cells typically ‘remap’ (i.e., change their preferred locations), and when revisiting the same environment, the same spatial code reemerges. In a recent study by our lab, place cells were shown to globally remap, forming multiple distinct representations (maps) of the same environment that stably coexist across time. In that study, switching between different maps of the same environment happened only after the mice were disconnected from the environment.
                Here I performed a set of experiments to further understand the mechanism underlying switching between multiple maps. My project established a way to manipulate this mechanism, both through external orientation inputs and by acting directly on the hippocampal network state using optogenetics. My results provide support for the proposed role of head-direction or other orientation signals in the switching between maps. They also support the model of maps as stable attractors, where the specific attractor (map) used depends on the initial conditions of the network.

    Zoom: https://weizmann.zoom.us/j/92871200575?pwd=WWdZbXVmM1R5RkFZYnpTajloelVTZz09
    Meeting ID: 928 7120 0575
    Password: 344121
    Lecture
  • Date:05WednesdayJanuary 2022

    Seminar for PhD thesis defense

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    Time
    11:00 - 11:00
    Title
    “Role of regulatory non-coding regions in the pathogenesis of Amyotrophic Lateral Sclerosis“
    Location
    Zoom: https://weizmann.zoom.us/j/94412270597?pwd=U0pCditQQ05iaGNmcmEyK0Rtc1FCdz09 Meeting ID: 944 1227 0597 Password: 482357
    Organizer
    Department of Molecular Genetics
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    Lecture
  • Date:06ThursdayJanuary 2022

    Current Technologies in Cell Analysis and Sorting by Flow Cytometry

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    Time
    09:00 - 10:00
    Location
    ZOOM
    LecturerDr. Ekaterina Kopitman
    Flow Cytometry Unit
    Organizer
    Department of Life Sciences Core Facilities
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    Lecture
  • Date:06ThursdayJanuary 2022

    Households and Community in the Kura-Araxes Village of Kvatskhelebi, Georgia

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    Time
    11:30 - 12:30
    Location
    Nella and Leon Benoziyo Building for Biological Sciences
    LecturerDr. Sarit Paz
    Unit of Culture Research, Porter School of Cultural Studies, Tel Aviv University
    Organizer
    Scientific Archeology Unit
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    Lecture
  • Date:09SundayJanuary 2022

    WIS-Q Seminar

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    Time
    13:00 - 13:00
    Title
    Computing the Quantum: Classical and Quantum Simulations of Many-Body Systems
    Location
    https://weizmann.zoom.us/j/95273631966?pwd=UjlhN2xIMnZERXNRcllGTnBxMWZPUT09
    LecturerProf. Erez Berg
    Organizer
    Department of Condensed Matter Physics
    Contact
    AbstractShow full text abstract about Many problems of interest, ranging from condensed matter phy...»
    Many problems of interest, ranging from condensed matter physics and quantum chemistry to quantum information, require finding the ground state of a system of many interacting degrees of freedom (e.g., qubits or quantum spins). The main challenge stems from the exponential scaling of the Hilbert space dimension with the number of qubits. I will first discuss various strategies to tackle this problem using classical computers, such as tensor network states and Monte Carlo sampling, and their limitations. Quantum computers are ideally suited for this task; I will present a proposal to simulate quantum systems on noisy intermediate-scale quantum (NISQ) devices made of imperfect qubits, where the noise level translates into a finite energy density (i.e., finite temperature).
    Lecture
  • Date:10MondayJanuary 2022

    A Hair-Raising Tale: Nerve – Stem Cell Interactions

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    Time
    10:00 - 11:30
    LecturerDr. Yulia Shwartz
    Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA
    Organizer
    Department of Molecular Cell Biology
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    Lecture
  • Date:10MondayJanuary 2022

    Circuits for decisions, attention and working memory in the primate visual system

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    Time
    14:00 - 16:00
    Location
    https://weizmann.zoom.us/j/91943040474?pwd=b0pya3luOGp6TVl1NGFuMUp4Ulo0QT09
    LecturerDr. Leor Katz
    National Eye Institute, National Institutes of Health at Bethesda, MD
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Making decisions, attending to certain items, and manipulati...»
    Making decisions, attending to certain items, and manipulating information in working memory are fundamental behaviors that rely on specific neural circuitry. Throughout my research I have contributed to understanding such behaviors in human and in nonhuman primates but found that despite tremendous advances in the field, we still lack a mechanistic understanding of what goes wrong in conditions such as dementia or autism. My long-term research goal is to determine the circuits that support cognitive behavior, in health and disease.
    In my talk, I present three key contributions I have made towards uncovering neuronal circuits for cognition in the macaque, an animal model whose neural circuitry affords unique insight into human brain function. First, I demonstrate the utility of rigorous psychophysical frameworks in determining the causal contribution of key brain regions to behavior in a perceptual decision-making task. Next, I describe how causal manipulations of brain areas involved in attentional control can be used to identify hitherto unknown areas and reveal new functional circuits in support of selective attention and object recognition. Finally, I show how computational analyses of population data reveal circuits within circuits with distinct roles in supporting working memory.
    I end the talk by presenting my future research directions and approach: to leverage my experience studying how we select from external information (from sensory signals) to investigate how we select from internal information (from information stored in visual working memory). By blending theory-driven experiments with large-scale electrophysiological recording and circuit-specific causal manipulations in behaving macaques, I aim to uncover how we select relevant information from working memory, and equally important, how we fail to do so when struck by disorders of executive or memory function.
    Lecture
  • Date:11TuesdayJanuary 2022

    Three arguments for increasing weather persistence in boreal summer – and why we should care.

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    Time
    11:00 - 11:00
    Location
    https://weizmann.zoom.us/j/7621438333?pwd=c0lpdlQzYSthellXWG9rZnM0ZDRFZz09
    LecturerDim Coumou
    Organizer
    Department of Earth and Planetary Sciences
    Contact
    AbstractShow full text abstract about Persistent summer weather can have significant socio-economi...»
    Persistent summer weather can have significant socio-economic impacts. Prolonged hot-dry conditions may lead to crop yield losses, while consecutive rainy days (e.g. associated with stalling cyclones) can cause flooding. Both observational and climate model analyses indicate that global warming weakens the hemispheric-wide circulation in boreal summer, yet it is still largely unclear what this weakening implies for the persistence of regional weather conditions. Here, I present multiple lines of evidence supporting that weather persistence in summer has been increasing over the last 40 years over most mid-latitude regions and will continue to do so under future global warming. Methodologically, we use a persistence metric rooted in dynamical systems theory, which does not require partitioning instantaneous atmospheric states in an arbitrary number of clusters. This makes it ideally suited to detect subtle changes in atmospheric motions including weather-persistence. I discuss relevant recent literature and argue that there is now substantial evidence for increasing weather persistence over mid-latitude regions, providing enhanced extreme weather risks for society.
    Lecture
  • Date:11TuesdayJanuary 2022

    "Experimental Data-driven Paradigms for Unfolding Complexity in Chemical Systems"

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    Time
    11:00 - 12:00
    Location
    Gerhard M.J. Schmidt Lecture Hall
    LecturerDr. Yevgeny Rakita
    Columbia University: Data Science Institute with Applied Physics and Applied Mathematics Johns Hopkins University: Materials Science and Engineering
    Organizer
    Department of Molecular Chemistry and Materials Science
    Contact
    AbstractShow full text abstract about With the growing complexity of functional materials and chem...»
    With the growing complexity of functional materials and chemical systems, we often nd ourselves
    limited in our ability to fully represent the set of descriptors of a chemical system. In complex chemical
    systems, nding a complete crystallographic model that folds all the interatomic correlations using
    a small set of structural descriptors may not always be feasible or practical. Alternatively, one can
    take a data-driven approach and measure the relative changes in structural or chemical features (e.g,
    structural correlations, oxidation states). An experimental data-driven approach does not require
    complete models and enjoys the rapidly evolving machine-learning tool-set, which excel at classifying
    relational datasets and, if also labelled by an observed property, can provide predictive power that
    links system's descriptors with observed properties.
    I will focus on two types of complexities:
    (1) Hierarchical complexity, in which di erent types of structural or chemical correlations change
    change with the probed correlation length. For example, in ferroic materials di erent prop-
    erties (e.g., mechanical, dielectric, optoelectronic) may depend di erently on short- and long-
    range structural correlations. In multi-component alloys local chemical correlations (random-
    distribution, ordering, clustering) can a ect corrosion and plasticity, but altogether show a single
    average structural phase. Since selected materials' properties depend on correlations at a speci c
    hierarchical level, it is important to be able to isolate those from one another.
    (2) Evolutionary complexity, where the order changes over space and/or time. Nucleation, crys-
    tal growth, intercalation - are examples for processes that involve evolutionary complexity and
    can also be found in batteries, heterogeneous catalysis and photovoltaics. Isolating and track-
    ing order-related correlations in heterogeneous kinetically-stabilized or dynamically changing
    systems is, therefore, important for their more complete understanding, design and control.
    Total scattering and Pair Distribution Function (PDF) analysis are key methods for unfolding
    structural correlations at di erent correlation lengths. Using 4D-STEM to generate nm-resolution
    spatially-resolved electron-PDF data taken from hot-rolled Ni-laminated bulk-metallic-glass [1], I
    demonstrate how both hierarchical and evolutionary complexity can be uncovered and studied. Par-
    tially assisted with a machine-learning classi cation toolbox, we show how di erent aspects of the
    structural and chemical order, such as chemical-short-range-order, can be directly visualized as a
    function of position. In a di erent example [2] I show how an evolutionary complex systems can be
    manipulated to achieve a desired chemical state. In this example we demonstrate an active reaction
    control of Cu redox state from real-time feedback from in-situ synchrotron measurements.
    While complexity can lead to a lack of control over a chemical system, it is essentially adding
    tuning-knobs that, once isolated, understood and controlled, can unlock new materials with desired
    functionalities.
    [1] Y. Rakita, et al., Mapping Structural Heterogeneity at the Nanoscale with Scanning Nano-structure Electron Mi-
    croscopy (SNEM), arXiv:2110.03589 (2021).
    [2] Y. Rakita, et al., Active reaction control of Cu redox state based on real-time feedback from in situ synchrotron
    measurements, JACS 142, 18758 (2020). DOI: 10.1021/jacs.0c09418.
    1
    Lecture
  • Date:11TuesdayJanuary 2022

    Matchmaking Taste Receptors and Their Ligands

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    Time
    14:00 - 15:00
    Location
    via Zoom: https://weizmann.zoom.us/j/97699944332?pwd=dUczaGpjMTlkR2VaTXZpKzJKa21idz09
    LecturerProf. Masha Niv
    The Institute of Biochemistry, Food Science and Nutrition Faculty of Agriculture, Food and Environment The Hebrew University
    Organizer
    Department of Chemical and Structural Biology
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    Lecture
  • Date:11TuesdayJanuary 2022

    Zoom seminar -Diversity of dopamine neurons: multi-agent reinforcement learning

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    Time
    16:00 - 17:00
    LecturerProf. Naoshige Uchida
    Center for Brain Science Harvard University, Cambridge, MA
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Dopamine regulates multiple brain functions including learni...»
    Dopamine regulates multiple brain functions including learning, motivation and movement. Furthermore, the striatum, a major target of dopamine neurons, is parceled into multiple subregions that are associated with different types of behavior, such as Pavlovian, goal-directed, and habitual behaviors. An important question in the field is how dopamine regulates these diverse functions. It has been thought that midbrain dopamine neurons broadcast reward prediction error signals to drive reinforcement learning. However, recent studies have found more diverse dopamine signals than originally thought. How can we reconcile these results? In this talk, I will discuss our recent studies characterizing diverse dopamine signals, and how these findings can be understood in a coherent theoretical framework.
    Zoom Link: https://weizmann.zoom.us/j/95406893197?pwd=REt5L1g3SmprMUhrK3dpUDJVeHlrZz09
    Meeting ID: 954 0689 3197
    Password: 750421
    Lecture
  • Date:13ThursdayJanuary 2022

    Towards the use of sustainable solutions for cultural heritage conservation

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    Time
    11:30 - 12:30
    LecturerDr. Oana Cuzman
    Institute for the Conservation and Valorization of Cultural Heritage, National Research Council, ICVBC-CNR, Florence, Italy
    Organizer
    Scientific Archeology Unit
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    Lecture
  • Date:13ThursdayJanuary 2022

    OT+ PVN neurons regulate aggression and dominance hierarchy in wild-derived female mice

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    Time
    12:00 - 13:00
    Title
    Student Seminar via Zoom - Phd Thesis Defense by Itsik Sofer
    LecturerItsik Sofer- Phd Thesis Defense
    Prof. Tali Kimchi, Lab Dept of Brain Sciences, WIS
    Organizer
    Department of Brain Sciences
    Contact
    AbstractShow full text abstract about Aggression and dominance hierarchy are basic social behavior...»
    Aggression and dominance hierarchy are basic social behaviors that are essential for the survival and reproductive success of most mammalian species. Typically, they are displayed whenever conspecifics have to compete for limited resources, such as food, water, territory, or access to mates. As a result, and due to sexual selection, intra-sexual competition is higher in males compared to females as fertile females are a limited resource to males. Thus, males often express a higher level of aggression and are most likely to form a dominance hierarchy in a group. Therefore, most studies of the biological basis of intra-sexual aggression and dominance hierarchy have been focused on males. However, it has long been observed that females also compete with each other and can form dominant hierarchies.
    In this study, we aimed to investigate the role of OT+ PVN neurons in the aggression of wild-derived female mice by comparing them to males. Wild-derived mice were chosen for their higher levels of aggression compared to the lab mouse strains, which might have lost these behavioral traits due to artificial selection and socially restricted environment while in captivity.
    To manipulate OT+ PVN neurons, we established a wild OT:Cre mouse line by backcrossing wild-derived mice with transgenic lab mice and validated that its phenotype resembles the wild-derived mice. Using these novel wild-backcrossed OT:Cre (Wild-BX) mice, we found that OT+ PVN neurons of females are activated due to agonistic interaction.
    Next, we virally ablated, using Casp3, or activated, using DREADD, OT+ PVN neurons in wild-BX males and females, and performed a standard resident-intruder assay (RI) to examine territorial aggression towards same-sex adults and unfamiliar pups. We found that ablation of OT+ PVN neurons in wild-BX females reduces adult and pup-directed aggression and increases sniffing behavior. In contrast, activation of this neuronal population promotes aggressive behavior toward adults and pups and decrees sniffing behavior. In males, similar manipulations did not affect either of these aggressive or sniffing behaviors, except a weak impact on pup-directed aggression.
    Moreover, by examining group behavior in a semi-natural environment, we found that ablation of OT+ PVN neurons suppresses dominant hierarchy formation in groups of wild-BX females. In contrast, activation strengthened the hierarchy and increased agonistic behavior in the group. In males, in contrast to the RI, the OT+ PVN ablation delayed the formation of the hierarchy and increased the anxiety in the group, whereas activation weakened the hierarchy and increased pro-social behavior.
    These findings suggest that OT PVN neurons have a sexually-dimorphic effect in aggression and dominance hierarchy behaviors, and they emphasize the importance of investigating both sexes in ethologically-relevant animal models and social contexts, in the study of socially relevant neuromodulators.

    Zoom link: https://weizmann.zoom.us/j/96648920836?pwd=OXlvV0NPTHIrVHNLYUpvZ2lNTnJZdz09
    Meeting ID: 966 4892 0836
    Password: 248477


    Lecture
  • Date:16SundayJanuary 2022

    Direct Imaging of Planet Formation

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    Time
    11:00 - 12:00
    Location
    https://weizmann.zoom.us/j/7621438333?pwd=c0lpdlQzYSthellXWG9rZnM0ZDRFZz09
    LecturerSivan Ginzburg
    California Institute of Technology
    Organizer
    Department of Earth and Planetary Sciences
    Contact
    AbstractShow full text abstract about The vast majority of detected planets are observed indirectl...»
    The vast majority of detected planets are observed indirectly, using their small perturbation on the light emitted by the host stars. In recent years, however, the world's largest ground based telescopes have succeeded in directly imaging the light coming from some planets themselves. I will present our comprehensive theory for the mass, luminosity, and spin of gas giant planets during their final stages of formation - when they simultaneously contract and accrete gas from a disk. I will apply this theory to the luminosity and spectrum obtained by the novel direct-imaging technique, highlighting the recently discovered PDS 70 system, where two planets were directly observed during formation for the first time.
    Lecture
  • Date:16SundayJanuary 2022

    The immune system-gut-brain axis: environmental impacts on aging and neurological disorders

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    Time
    11:00 - 12:30
    LecturerDr. Eran Blacher
    Department of Neurology and Neurological Sciences Stanford School of Medicine Stanford University
    Organizer
    Department of Molecular Cell Biology
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    Lecture
  • Date:17MondayJanuary 2022

    MicroBooNE's new results from the deep-learning-based 2-body CCQE search for an electron neutrino excess

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    Time
    12:30 - 12:30
    Location
    https://weizmann.zoom.us/j/91081797141?pwd=SWthZEVuVkdmU0wrOURMcG1rTW00Zz09
    LecturerDr. Ran Itay
    Stanford
    Organizer
    Department of Particle Physics and Astrophysics
    Contact
    AbstractShow full text abstract about Abstract:The MicroBooNE detector is a liquid argon time proj...»
    Abstract:The MicroBooNE detector is a liquid argon time projection chamber (LArTPC) located on-axis in the Booster Neutrino Beam (BNB) at Fermi National Laboratory. One of the primary goals of the experiment is to investigate the excess over background expectations of electromagnetic-like events observed by MiniBooNE at low energies. In this talk, I will present the latest results from MicroBooNe's four analyses, with a focus on the 2-body CCQE search, which utilizes deep learning and traditional techniques.
    Lecture
  • Date:17MondayJanuary 2022

    Seminar for PhD thesis defense

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    Time
    13:30 - 13:30
    Title
    “Evolutionary Strategies and The Effect of Mate Choice on Fitness Inheritance In Yeast”
    Location
    Zoom: https://weizmann.zoom.us/j/99505479787?pwd=YklXZkw0NmRWazlGMDhnQkZCdDlwdz09 Meeting ID: 995 0547 9787 Password: 657416
    LecturerSivan Kaminski Strauss
    Organizer
    Department of Molecular Genetics
    Contact
    Lecture
  • Date:18TuesdayJanuary 2022

    The Complexity of Protein Quaternary Structure

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    Time
    10:00 - 10:30
    Location
    Via Zoom: https://weizmann.zoom.us/j/99254351955?pwd=VEJZRDBSbTN1MWRFZWhoVEJSdEQwZz09
    LecturerShir Marciano
    Dept. of Biomolecular Sciences-WIS
    Organizer
    Department of Biomolecular Sciences
    Contact
    AbstractShow full text abstract about Abstract: Over half of all proteins are complexes consisti...»
    Abstract:
    Over half of all proteins are complexes consisting of more than one subunit, forming homo or hetero-oligomeric structures. To date, our knowledge of the oligomeric state of proteins comes predominantly from their experimentally determined static structures. However, this provides only a snapshot, which does not inherently consider the dynamic equilibrium between different quaternary forms, which relate to solution conditions and protein concentration. Taking advantage of recent method developments, we re-evaluated the oligomeric state of 17 different bacterial proteins by native mass-spectrometry (MS), mass photometry (MP), size exclusion chromatography (SEC), and small-angle x-ray scattering (SAXS). The results were compared to their predicted oligomeric states reported in the PDB and UniProt databases. For at least half the proteins, the predicted oligomeric form described in publicly available databases did not match the state(s) identified in solution. As most structural methods require very high protein concentrations, unique solution conditions, and are not suited to detect heterogeneity in the assembly, they under-estimate the complexity of protein quaternary structure in solution.

    Lecture
  • Date:18TuesdayJanuary 2022

    Chaperones drive in vitro evolution of uracil glycosylase towards misfolded states

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    Time
    10:30 - 11:00
    Location
    Via Zoom: https://weizmann.zoom.us/j/99254351955?pwd=VEJZRDBSbTN1MWRFZWhoVEJSdEQwZz09
    LecturerDr. Oran Melanker
    Dept. of Biomolecular Sciences-WIS
    Organizer
    Department of Biomolecular Sciences
    Contact
    AbstractShow full text abstract about Abstract: Evolution is driven by random mutations, whose ...»
    Abstract:

    Evolution is driven by random mutations, whose fitness outcome is tested over time. In vitro evolution of a library of a randomly mutated protein mimics this process, however, on a short time-scale, driven by a specific outcome (such as binding to a bait). Here, we used directed in vitro evolution to investigate the role of molecular chaperones in curbing promiscuity in favor of specificity of protein-protein interactions. Using yeast surface display, we generated a random library of the E. coli protein Uracil glycosylase (UNG), and selected it against various baits. Those included the purified chaperones GroEL, DnaK+DnaJ+ATP, or total protein extracts from WT or delta DnaK+DnaJ cells. We show that in-vitro evolution differs from natural evolution in cells, both physically and thermodynamically. We found that chaperones, whether purified or as ! part of the protein-extract, select for, and thus enrich uracil glycosylase (UNG) misfolded species during this in vitro evolution process. In a more general context, our results show that chaperones purge promiscuous misfolded clones from the system, and thereby avoiding their detrimental effects, such as forming wrong interactions with other macromolecules, including proteins, which can harm proteostasis.
    Lecture

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